pdk2b (pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345)


Basic Information

Item Value
gene id pdk2b
gene name pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27946996 ~ 27951997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237703.1
GTCTCAAGACAAGACAGCCCCTGACAGAATAAAGAACTGCGCGGAAAACGTCTCCTGGCAAAAGCCACGGCTTTGATTTAATCTTAGATAGCATTGCaacgttttagtttttttttttttagttcggATCTTCCAAGATGAAGTTCGTACGGTATATAATGAGGAACGCTGCTATGTTAAACGCGCCGAAGCACATTGATTACTACGCGAAATTTTCTCCATCGCCGCTGTCAATGAAGCAGTTTCTGGATTTCGGATCCACAAACGCGTGCGAGAAAACGTCCTTCGCTTTCCTCAAGCAAGAGCTCCCCGTCAGGCTGAGCAACAGTCTGAAGGAGATCCACCTTTTACCAGACCAACTGATCATGACCCAATCCGTTCAGCTCGTTCACAGCTGGTTTGTGCAAAGCCTGATGGACATCCTAGAATTCCAAGGCAAGAATCCCGATGATCCTAAAGTTCTTACTGAATTTGTGGACACTCTGGTGACCATCAGGAACAGGCACAATGATGTGGTGCCCACCATGGCCCAAGGCGTCATCGAGTATAGAGATGCGTTTGGGACAGACCCTGTGACCTGTCAGAATATTCAGTACTTTCTGGACCGCTTTTACATGAACCGCATCTCCATTCGCATGCTCATCAACCAGCACACCCTGATCTTCGATGGCTCCACAAATCCAGGACATCCAAGCAGCATCGGGTGCATTGACTCCTGCTGTGACGTCACAAATGTAATCCAAGATGCATACGAGTGTGCCAAAATGCTCTGTGAGCAGTATTACCTCGGATCCCCTGAGCTGGAGCTTAGAGAGATAAATGCAAAGAAGAAGTCACAGCCAATCGAGATATCCTATGTTCCTTCCCATCTCTACCACATGGTTTTTGAGCTCTTCAAGAACGCGATGAGGGCTACCCTTGAGAATCACGAAACAAGCAGCACGTTGCCACCAATCAAAGTCACGGTTGCTCTAGGTGGAGAGGACCTGTCAATCAAGATCTGTGACAGGGGCGGTGGCGTTCCTTTCAGGAAGATTGACAGGCTTTTTAGCTACATGTATTCAACAGCGCCCAGACCTACTATTGGTGACCATCAGCGGACTCCAATGGCTGGCTTTGGCTACGGCCTTCCCATTTCCCGCCTTTACGCACGCTACTTCCAAGGTGATCTCCAGCTTTACCCGATGGAGGGCTATGGTACAGATGCTGTAATTCAGCTGAAGgccctGTCTACAGATTCAATAGAGAAGCTTCCAGTGTTCAATCAAACCGCCTTGCGTCATTACAAATTCAACCAGGAAGCCGACGACTGGTGCGTCCCGAGCAAAGAGCCGCTGAACTTGGCTGCGTACAAGGCTGCAAAGTGAAACAACGGAGCTGGTTGCCTTAAAACCATGACTTCAAGTGAATGCCAAGATAGGCTGCCATTGTGAAAGCTCACATTCGGGGACCAGTGACAGCTTTTCCCAAATGCTCTTTGAGTGCTGTCGTCTGGGAACAGTTAAACTGCATGTGGCCAGAATTTAAGATACCAAACAGTAGATTCCTTAGTAAAAACAAGTTATTACTGTGGTGCCGCTGAACTTGGAGGTTTTCAGCAAAAGCTCAGGGATGAAGAGTCCCGCGCGAGTGTTAAGGCCTGGAGGGCCGAGAGGTGTTTAGATGCACGCGAACCTGATTGAAGTGGAGTTAAGTCTAAAAACAGGTGGAGAGAAGTGTATGTattgcaaagaaataaatactcaAGGCAGAAGGAATGTAGCTGGCATGAGAAATTTCAGAGGTCAGAAAAAGTGTATAAATTGTGAGAAGTGATAAGGAAAGTGGCCAAAAGATGTATTTTTCCTCTGTAAAGAGGCTGGACATACTTGATGTGTGATCGACACTTCCAAtttaagaaaagcatttatgtaagcatttattaatagcaCTGTACGGTTGTACTGAATGACCACAAGATGTGTATACTTAATGTTGTGCTCACGATATTTATAACTGTTAAAAGGACCTTTTGTTTGAGTTTTTCGtatgaatgaaataaactgatattttctCATCAA

Function

symbol description
pdk2b Predicted to enable pyruvate dehydrogenase (acetyl-transferring) kinase activity. Predicted to be involved in protein phosphorylation and regulation of glucose metabolic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PDK2 (pyruvate dehydrogenase kinase 2).

NR:

description
PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237703.1 True 2060 mRNA 0.46 11 27946996 27951997

Neighbor

gene id symbol gene type direction distance location
flot1a flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738 coding downstream 531346 27409088 ~ 27415650 (-)
LOC122342367 NA coding downstream 1077848 26865773 ~ 26869148 (-)
trnas-uga_106 NA coding downstream 1219602 26727313 ~ 26727394 (-)
trnak-uuu_100 NA coding downstream 1221099 26725825 ~ 26725897 (-)
trnak-uuu_99 NA coding downstream 1223150 26723774 ~ 26723846 (-)
LOC122343310 LOC107752528,LOC107549854 coding upstream 14312 27966309 ~ 27969769 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding upstream 17913 27969910 ~ 27977175 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding upstream 29073 27981070 ~ 28037700 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 161505 28113502 ~ 28118332 (-)
LOC122342473 znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding upstream 219254 28171251 ~ 28177586 (-)
G31728 NA non-coding downstream 4192 27941679 ~ 27942804 (-)
G31723 NA non-coding downstream 23820 27920620 ~ 27923176 (-)
G31718 LOC107549838,LOC107752523,LOC107554337,LOC107754066,LOC107666346,LOC107665176 non-coding downstream 42313 27898767 ~ 27904683 (-)
G31692 NA non-coding downstream 126743 27820024 ~ 27820253 (-)
G31507 NA non-coding downstream 297451 27557605 ~ 27649545 (-)
G31736 NA non-coding upstream 128178 28080175 ~ 28080381 (-)
G31737 NA non-coding upstream 143897 28095894 ~ 28096491 (-)
LOC122342474 NA non-coding upstream 175217 28127214 ~ 28129808 (-)
G31759 NA non-coding upstream 274417 28226414 ~ 28228301 (-)
G31765 NA non-coding upstream 292993 28244990 ~ 28250107 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other downstream 302264 27642692 ~ 27644732 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other downstream 331055 27539355 ~ 27615941 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 557598 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 564169 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 579347 27366412 ~ 27367649 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other upstream 113300 28065297 ~ 28067762 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 168250 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 229569 28181566 ~ 28187257 (-)
G31776 LOC107712874 other upstream 412028 28364025 ~ 28365196 (-)
G31868 NA other upstream 892196 28844193 ~ 28846421 (-)

Expression


Co-expression Network