rd3l (rd3l,LOC107697292,LOC107560380,LOC107743985)


Basic Information

Item Value
gene id rd3l
gene name rd3l,LOC107697292,LOC107560380,LOC107743985
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17033921 ~ 17037157 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237706.1
GAGCAGAGAGACAGAAGGCAGTTTGCGGTGGACAGGGGAGAATTTCACATTCTTCATCTCAACTTTGCCCGTCGCAGTCACATAGCTGTGTGTCACTGGCACACGCTCTCTTATTTTTTTGATTGTCATTCTTCCTGTTCAAACACTTAGCTTCTCTTACTGTCTTTCTGCAGCCTATCTCTTCTCATCTTTcccacttttatttttacccttTCATTCTATATCAGACGTCCGgcttcatttacatattttatttgccTAACCTAATGAAATTTGGTGGTACCAGATGGACTCAAAGCATCACGGACCTCGACCTCTAAAACCCACAagTCCGGCCATGCCTTTCGTAAGTTGGCCCCACACAAATGGATGTGGAGGCCCGGGTCGGATGCTGCTACGCGAGATGATTTGGCAGCTGGAGCAAAGAGTACTTCAAATTCAAGAGGAGGAGTTTCAGTACTGTATCTCCCGTGGCATTTTGGGATACCGTCACCCCCCAGCATACCCAAGCCTGCTTGCCCTCATACCCGCCTCCGAACACCGCCAGCTAGAGCGGCTCTGTGGCCGCATCCCACCCTCACACACCGCCGTCGTACTGTCCAGACTCCATGATCTCATGGCCCACAATGACATCCCTCCCTGGGAACTGGTGGGTGTCTTCAAGCAAGTTCTTAGAGACTTCCTGAGGAGACAGGAAGACGGCATGCAAAGACGTCCAGCCCCTTCAGCTCCACCAACAATTCTTTCTGCTTCCAGTCCACCTACAGAGAGTAATGACAGAAATCACATAGCTGGAAATGCATCTAGTTCTTTATCAGAGGAGTCAGGGAAGCACAGGGAGGAAATCCCCACGATTTCTAGTTATGTGGATAAACATTTGCGTGCCTCCTGCCCTTACTCTATCCACAGAGATTGGAGTCTGCCCTTCTGCCATCCTTTTGCTTACGAGGCCTACAGCACCACATTGTGAGACACTTAATTGTAAAAGTCCAACATGTTCTCAAAGCAATTCCtaacagttttatgttttagcaAATTGGTGGCTAATTTGTTGTCTCGTTTctcatttatatgtttttgtatgatCCGCTTGCATCCAGCTGATTGTTAGTATCATGCattaaaatcatgcattttcATACAAATCTCACCCTACAAATGCTTATGAAATCTCCACCTCTTAAATAATTGTTTCCTCATGAGAAAAGTCCATGCAGctatttttctgtgtgtttcctGTTTAGACTGATTAAAAGTCATGATCTATGTGATGTTAAAATTTGGAAGATGAGCCATAATCTTTTAATAATCAATCAATGA

Function

symbol description
rd3l Orthologous to human RD3L (RD3 like).

NR:

description
PREDICTED: protein RD3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237706.1 True 1320 mRNA 0.45 3 17033921 17037157

Neighbor

gene id symbol gene type direction distance location
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding upstream 7583 16999905 ~ 17026338 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding upstream 94234 16937799 ~ 16939687 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding upstream 101715 16925017 ~ 16932206 (+)
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding upstream 195497 16822113 ~ 16838424 (+)
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding upstream 323765 16701043 ~ 16710156 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding downstream 3700 17040857 ~ 17083120 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding downstream 85276 17122433 ~ 17176497 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding downstream 229300 17266457 ~ 17293636 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding downstream 271136 17308293 ~ 17348870 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding downstream 359978 17397135 ~ 17410852 (+)
G29078 NA non-coding upstream 92611 16941016 ~ 16941310 (+)
LOC122342883 NA non-coding upstream 122579 16897515 ~ 16911342 (+)
G29026 NA non-coding upstream 281332 16748718 ~ 16752589 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding upstream 333703 16698521 ~ 16700218 (+)
G29011 NA non-coding upstream 423917 16609724 ~ 16610004 (+)
G29086 NA non-coding downstream 116 17037273 ~ 17038220 (+)
G29089 NA non-coding downstream 9714 17046871 ~ 17085857 (+)
LOC122342667 NA non-coding downstream 53382 17090539 ~ 17119106 (+)
G29178 NA non-coding downstream 181985 17219142 ~ 17219514 (+)
G29181 NA non-coding downstream 183100 17220257 ~ 17220616 (+)
G28982 NA other upstream 559540 16473898 ~ 16474381 (+)
G28899 NA other upstream 1048195 15985219 ~ 15985726 (+)
G28891 NA other upstream 1192066 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1378643 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 1478239 15439334 ~ 15555682 (+)
atp5mj NA other downstream 1262 17038419 ~ 17040830 (+)
G29526 NA other downstream 1263258 18300415 ~ 18301189 (+)
G29545 NA other downstream 1399303 18436460 ~ 18461317 (+)
G29642 NA other downstream 1846022 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2253063 19290220 ~ 19342911 (+)

Expression


Co-expression Network