tmtc1 (tmtc1,LOC107725887,LOC107656308,LOC107592224,LOC107580673,LOC107658819,LOC102198433)


Basic Information

Item Value
gene id tmtc1
gene name tmtc1,LOC107725887,LOC107656308,LOC107592224,LOC107580673,LOC107658819,LOC102198433
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4063857 ~ 4097271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237734.1
ACACTCGCTAACATTACGCATTCAGAGCTGTAACGCTGTCCGGGCTTCGGCGCAGCACACGGGCTATGGAACGGGACGGCTTTCCTCTTTTTGACTCCCACGAGCAGCATGCGAGACGGGGACCGACATGACAGCGAACAGCCGAGGGACCAAAGCCGCCCCTCTCCCGGTGCAGCGGCGGCTGTCGGCGCTACCGAGGCCGGTGGTAGGAGTCCGGTACGCCGCGCTGGTGGCGGTGTGCGCGCTCTGCTACAGTAACTCTCTCTGGGGGGAGTTTGTGCATGATGATATATGGGCCATCACCAACAATCCAGATATCAGACCGGGCTCCAGCCTCCGGAGCATCTTTACCAATGACTTTTGGGGCAAGCGGATGGCTGATAACACCAGCCACAAATCCTACCGTCCGCTCTGCATCCTCACTTTCAAGTTAAACATTTTGCTGGGCGGCATGACTCCGTTCTACTTCCACCTGGTGAACGTGTTTCTGCACTGCATGGTGACGGCGCTGCTCATGCACACCTGcgaaaagtgtgtgtttgaagacAGCAACCTCTCTTTTCTCACCGCACTGCTTTTCTCTGTTCACCCCATTCACACCGAAGCTGTGTCTGGGATCGTCGGGAGAGCAGATGTTTTAGCCAGTGTGTTGTTCCTCCTGGCCTTTCTCTCCTATATTAGgaGTGTGTCAGCGAGCAGAATGACTGACGAGTTTCCTCCCACAGTGTCTGTCTTGTCACTGGCTCTCAGTCTGTTGTTGGGCACCTGTGCCATGCTGGTGAAAGAGACGGGCGTTACGGTGTTTGGTGTGTGCGTCTTATACGATTTCCTGGTGCTCTGCCGCAAACCGCTCATCTCGCACCTGTCGCGCTCCGGGTTGAAGGAGCTCGTCGGAAATTCCAGTCCGTTCGTCAAACGAGCTTGCATCATCTCGCTACATGTTACAGTCATCATGTCTTTACGCTTGTGGTTGATGGGTGGATCCATGCCGCTGTTCTCAGAGCAAGACAATCCGGCGTCCTTCTCTCCATATCTGCTCACCAGGTTTCTTACATACTGTTATCTGCTCTCCTTCAATGCCTGGCTCTTACTGGCTCCCACAGTGCTTTGCTACGACTGGCAGGTGGGCAGCATTCCGTTAGTGGAGTCTCTATGGGACGGACGGAATATCGCTTCCCTGGCTTTGGCTTTCGTCATGCTGGCGCTGAGCCTGAACTGTGTTACACGCCTACAGaAGATGAAAGGAAAGGAGGTGTTGGTGGGCGTGCTGTTCCTGGTCTTTCCCTTCATCCCAGCCAGTAATCTGTTCTTCCGTGTGGGATTTGTGGTGGCGGAAAGAGTTCTCTACATGCCCagTATGGGTTACTGTGTTCTGGTGGTGCACGGCCTGAACAGACTGTATTCAGTGGTCAGTCGGTGGGGAGCAGCCGCACTAACTGTGTCCATGCTGgtcgtcctcctcctcttctcctggAAGACCGTCCAGCAGAATGAGATCTGGCTCTCTAGAGAAGCCCTGTTcagATCTGGCATTCAGACTTTACCTCACAATGCTAAAGTTCATTACAACTATGCCAACTTCCTGAAGGACAGAGGACGAAACCAAGAAGccatttatcattataaaacGGCCCTTAGACTGTACCCTCGACATGCCAGTGCTCTGAATAATCTGGGCACCCTGACTCACCAGGCAGAGGAGGCTGAAGTTTATTACAGGAGAGCGCTGGATATTAACCCTCAACACAACAGAGCTCTCTTCAACCTGGGCAACCTTCTGAAGTCTCAGGGGAAGGAGGAAGAGGCGGAGAGGATGTTAAAGGAATCGATTCGTTTCGGTCCCCATTTTGCTGATGCGTACTCCAGCCTGGCCTCTCTATATGCTGACCagGGACATTCAAAAGAAGCAAATGAAATTTATACCAAGGGTATTGAGAACTGCCCCGACAGTTCTGACCTCCATAACAACTATGGTGTGTTCCTGGTGGACACGGGTCATGGGGATCGTGCAGCCTTTCATTACCAGGAAGCTGTGCGTCTCAAGCCATCTCACTATGTTGCCATGGTGAACCTGGGTCGTCTTCTTCGCTCGTCCAATGACAATAAAGAGGCAGAGCTATGGTACAAAAGggCACTGCAAGTGGTTCGTAAAGTGGATATCCTGACCCCTCTTGGGGCTTTATACTACAACACCGGTAGATACGAGGAGGCACTGGAGGTTTACAGAGAGGCGGCCACACTTCAGCCCGAGAGCACTGATATCTGGCTCGCCCTGGCGCAGGTTTTAGCTATGGCGGGTCGATCTGGGGAGGCCGAGAAAATGACCCAGGGCGTCATTTCAAAGACCAGCAACTGCATTGAATGTTACCGCTTGTTGTCTGCCATCTACAGCAAACAAGGCAACCATACAGAGgcgtTGGATGCGTTGAAGACAGCACTGCAGCAGGAGCCGTCAGACCCCGGGGTGAGGGCAGAGCTGCACTTCTCGATGGGAAACCAGCTCAGAGAGATGAACGAACTCGATCGAGCCTTCCAGAGCTACAAGCTTGCTGTCGAGCTCAAACCTGACCAATCACAAGCCTGGATGAATATGGGCGGGATTCAGCATATCAAGgGAGACTATGCAGCAGCACGAATGTACTACCAAAGAGCTCTTCTCCTCTCACCCGGCTCCAAACTGCTGAAGGAAAACCTGGCCAAGCTGGACAGGCTAGAGAAAAAACTCCAAGGGGCCTAGAGGAAAAGCGTGACCTGAACTATCGGCCAAATGATGAAGGACAAGCAACCGAGAGACAGaagggtgaagagaggggcgaaCTACGGACTCAGGAGATGATTAACGACCTCTTTCTTCACCTCCAGAGTTTACAGAGAGCCTCTCGGATCGAACTAATCCAAAAGACCGACTTTTTTTAGCCTCTACATCCAGGGCTGGACCACGCAGATACCATTGACCTCAACACATCACCGCAGTATCTCACACCAACATATTTAACAAGTCCTCATCCCTTTTTCCCCCCGCGTGTCGTCCCAAGCACTCAGACCAGCACAGATTGAGCGTTTGTTGTTCTTGTATGAATCGGAGCAGAGGCACCATCTCTGAgagggatttttattttattttttccggAGCCGTTCCGCTCGACCACTGCGGCTCCGCTCCGCTGATTGCAAAACCTCAGCAAGCATTTCAGACAAATGCTCCGAGTTATCAAATATGACGAGCTGTGTTCCATGAACACGGCTGATCGGTTGCGGGTGggcttgtgttttgtgttgttttttttctacgtaatgatttttaaatgaaggagaaaaaaaggacAGAGTCGTTCCTCGTGtgctttaattagattttttttttatcttgtacATGCATCAATATTGTGGAATGTATCTTGGACTAAAGGCATATTGACCTGTGCAGTGAATTGCATATCATTTTTATCCTCATAAGCTATAATACTGAAGTCTATTTAAATCGGAATTACGAATCATACATAATGACGTATCCTTGAATTAGGGGGATTTTAGTCATATTTTCAGTGGCCGGAATTTGTCATGCGGTACTCTTGATTACACCGTAATCTTTGCACTTACATTTCGTTGCCATAGGAACTGTTATCAAGAACATTTCTTGAATTCGGCAGAAGCAGCAGCCGTGCTAAACATGTCATAGCAGAAACCAATGTGAAGTAATGtatgattatttaataaatattatccAGTACCA
>XM_043237735.1
CACACTCGCTAACATTACGCATTCAGAGCTGTAACGCTGTCCGGGCTTCGGCGCAGCACACGGGCTATGGAACGGGACGGCTTTCCTCTTTTTGACTCCCACGAGCAGCATGCGAGACGGGGACCGACATGACAGCGAACAGCCGAGGGACCAAAGCCGCCCCTCTCCCGGTGCAGCGGCGGCTGTCGGCGCTACCGAGGCCGGTGGTAGGAGTCCGGTACGCCGCGCTGGTGGCGGTGTGCGCGCTCTGCTACAGTAACTCTCTCTGGGGGGAGTTTGTGCATGATGATATATGGGCCATCACCAACAATCCAGATATCAGACCGGGCTCCAGCCTCCGGAGCATCTTTACCAATGACTTTTGGGGCAAGCGGATGGCTGATAACACCAGCCACAAATCCTACCGTCCGCTCTGCATCCTCACTTTCAAGTTAAACATTTTGCTGGGCGGCATGACTCCGTTCTACTTCCACCTGGTGAACGTGTTTCTGCACTGCATGGTGACGGCGCTGCTCATGCACACCTGcgaaaagtgtgtgtttgaagacAGCAACCTCTCTTTTCTCACCGCACTGCTTTTCTCTGTTCACCCCATTCACACCGAAGCTGTGTCTGGGATCGTCGGGAGAGCAGATGTTTTAGCCAGTGTGTTGTTCCTCCTGGCCTTTCTCTCCTATATTAGgaGTGTGTCAGCGAGCAGAATGACTGACGAGTTTCCTCCCACAGTGTCTGTCTTGTCACTGGCTCTCAGTCTGTTGTTGGGCACCTGTGCCATGCTGGTGAAAGAGACGGGCGTTACGGTGTTTGGTGTGTGCGTCTTATACGATTTCCTGGTGCTCTGCCGCAAACCGCTCATCTCGCACCTGTCGCGCTCCGGGTTGAAGGAGCTCGTCGGAAATTCCAGTCCGTTCGTCAAACGAGCTTGCATCATCTCGCTACATGTTACAGTCATCATGTCTTTACGCTTGTGGTTGATGGGTGGATCCATGCCGCTGTTCTCAGAGCAAGACAATCCGGCGTCCTTCTCTCCATATCTGCTCACCAGGTTTCTTACATACTGTTATCTGCTCTCCTTCAATGCCTGGCTCTTACTGGCTCCCACAGTGCTTTGCTACGACTGGCAGGTGGGCAGCATTCCGTTAGTGGAGTCTCTATGGGACGGACGGAATATCGCTTCCCTGGCTTTGGCTTTCGTCATGCTGGCGCTGAGCCTGAACTGTGTTACACGCCTACAGaAGATGAAAGGAAAGGAGGTGTTGGTGGGCGTGCTGTTCCTGGTCTTTCCCTTCATCCCAGCCAGTAATCTGTTCTTCCGTGTGGGATTTGTGGTGGCGGAAAGAGTTCTCTACATGCCCagATCTGGCATTCAGACTTTACCTCACAATGCTAAAGTTCATTACAACTATGCCAACTTCCTGAAGGACAGAGGACGAAACCAAGAAGccatttatcattataaaacGGCCCTTAGACTGTACCCTCGACATGCCAGTGCTCTGAATAATCTGGGCACCCTGACTCACCAGGCAGAGGAGGCTGAAGTTTATTACAGGAGAGCGCTGGATATTAACCCTCAACACAACAGAGCTCTCTTCAACCTGGGCAACCTTCTGAAGTCTCAGGGGAAGGAGGAAGAGGCGGAGAGGATGTTAAAGGAATCGATTCGTTTCGGTCCCCATTTTGCTGATGCGTACTCCAGCCTGGCCTCTCTATATGCTGACCagGGACATTCAAAAGAAGCAAATGAAATTTATACCAAGGGTATTGAGAACTGCCCCGACAGTTCTGACCTCCATAACAACTATGGTGTGTTCCTGGTGGACACGGGTCATGGGGATCGTGCAGCCTTTCATTACCAGGAAGCTGTGCGTCTCAAGCCATCTCACTATGTTGCCATGGTGAACCTGGGTCGTCTTCTTCGCTCGTCCAATGACAATAAAGAGGCAGAGCTATGGTACAAAAGggCACTGCAAGTGGTTCGTAAAGTGGATATCCTGACCCCTCTTGGGGCTTTATACTACAACACCGGTAGATACGAGGAGGCACTGGAGGTTTACAGAGAGGCGGCCACACTTCAGCCCGAGAGCACTGATATCTGGCTCGCCCTGGCGCAGGTTTTAGCTATGGCGGGTCGATCTGGGGAGGCCGAGAAAATGACCCAGGGCGTCATTTCAAAGACCAGCAACTGCATTGAATGTTACCGCTTGTTGTCTGCCATCTACAGCAAACAAGGCAACCATACAGAGgcgtTGGATGCGTTGAAGACAGCACTGCAGCAGGAGCCGTCAGACCCCGGGGTGAGGGCAGAGCTGCACTTCTCGATGGGAAACCAGCTCAGAGAGATGAACGAACTCGATCGAGCCTTCCAGAGCTACAAGCTTGCTGTCGAGCTCAAACCTGACCAATCACAAGCCTGGATGAATATGGGCGGGATTCAGCATATCAAGgGAGACTATGCAGCAGCACGAATGTACTACCAAAGAGCTCTTCTCCTCTCACCCGGCTCCAAACTGCTGAAGGAAAACCTGGCCAAGCTGGACAGGCTAGAGAAAAAACTCCAAGGGGCCTAGAGGAAAAGCGTGACCTGAACTATCGGCCAAATGATGAAGGACAAGCAACCGAGAGACAGaagggtgaagagaggggcgaaCTACGGACTCAGGAGATGATTAACGACCTCTTTCTTCACCTCCAGAGTTTACAGAGAGCCTCTCGGATCGAACTAATCCAAAAGACCGACTTTTTTTAGCCTCTACATCCAGGGCTGGACCACGCAGATACCATTGACCTCAACACATCACCGCAGTATCTCACACCAACATATTTAACAAGTCCTCATCCCTTTTTCCCCCCGCGTGTCGTCCCAAGCACTCAGACCAGCACAGATTGAGCGTTTGTTGTTCTTGTATGAATCGGAGCAGAGGCACCATCTCTGAgagggatttttattttattttttccggAGCCGTTCCGCTCGACCACTGCGGCTCCGCTCCGCTGATTGCAAAACCTCAGCAAGCATTTCAGACAAATGCTCCGAGTTATCAAATATGACGAGCTGTGTTCCATGAACACGGCTGATCGGTTGCGGGTGggcttgtgttttgtgttgttttttttctacgtaatgatttttaaatgaaggagaaaaaaaggacAGAGTCGTTCCTCGTGtgctttaattagattttttttttatcttgtacATGCATCAATATTGTGGAATGTATCTTGGACTAAAGGCATATTGACCTGTGCAGTGAATTGCATATCATTTTTATCCTCATAAGCTATAATACTGAAGTCTATTTAAATCGGAATTACGAATCATACATAATGACGTATCCTTGAATTAGGGGGATTTTAGTCATATTTTCAGTGGCCGGAATTTGTCATGCGGTACTCTTGATTACACCGTAATCTTTGCACTTACATTTCGTTGCCATAGGAACTGTTATCAAGAACATTTCTTGAATTCGGCAGAAGCAGCAGCCGTGCTAAACATGTCATAGCAGAAACCAATGTGAAGTAATGtatgattatttaataaatattatccAGTACCA

Function

symbol description
tmtc1 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human TMTC1 (transmembrane O-mannosyltransferase targeting cadherins 1).

NR:

description
PREDICTED: transmembrane and TPR repeat-containing protein 1

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237734.1 True 3733 mRNA 0.50 20 4063858 4097271
XM_043237735.1 False 3566 mRNA 0.50 19 4063857 4097271

Neighbor

gene id symbol gene type direction distance location
ipo8 ipo8,LOC107726055,LOC107580646 coding upstream 1810 4047051 ~ 4062047 (+)
srgap1b srgap1b,LOC107658816,LOC107580603,LOC107743491,LOC107656311,LOC107725889 coding upstream 24452 4008341 ~ 4039405 (+)
nfyba nfyb,nfyba,LOC107656315,LOC107658836,LOC107592261,LOC107581291,LOC107743639,LOC106561000 coding upstream 88070 3973075 ~ 3975787 (+)
slc41a2b slc41a2b,slc41a2,LOC107658826,LOC107726006,LOC107743571,LOC107580572,LOC107656312 coding upstream 104597 3909143 ~ 3959260 (+)
aldh1l2 aldh1l2,LOC107580561,LOC107592231,LOC107743541,LOC107658818,LOC107656317 coding upstream 157926 3897077 ~ 3905931 (+)
ovch1 LOC107658825,LOC107592259,LOC107736419,LOC107743570 coding downstream 792 4098063 ~ 4102180 (+)
lmf2b LOC107658822,LOC107592223,LOC107656307,LOC107580684,LOC107743574,LOC107725886 coding downstream 5507 4102778 ~ 4113721 (+)
kitlgb LOC107725965,LOC107580747,LOC107656304,LOC107658725 coding downstream 18195 4115466 ~ 4121307 (+)
lsm8 lsm8,LOC107592220,LOC107580766 coding downstream 28077 4125348 ~ 4126807 (+)
hspa14 hspa14,LOC107658827,LOC107592213,LOC107580804,LOC107656298 coding downstream 67466 4164737 ~ 4170689 (+)
LOC122343346 NA non-coding upstream 56709 3988683 ~ 4007148 (+)
LOC122343347 NA non-coding upstream 255959 3806939 ~ 3807898 (+)
G25537 NA non-coding upstream 355005 3708537 ~ 3708852 (+)
G25536 NA non-coding upstream 356793 3706859 ~ 3707064 (+)
G25535 NA non-coding upstream 361486 3701834 ~ 3702371 (+)
G25823 tymp,LOC107725998,LOC107580729,LOC107743597 non-coding downstream 31652 4128923 ~ 4129250 (+)
G25824 NA non-coding downstream 32068 4129339 ~ 4129628 (+)
G25825 NA non-coding downstream 32873 4130144 ~ 4130422 (+)
G25827 NA non-coding downstream 34837 4132108 ~ 4132552 (+)
LOC122342475 NA non-coding downstream 127312 4224583 ~ 4227231 (+)
G25551 NA other upstream 325263 3737502 ~ 3738594 (+)
G25514 NA other upstream 561763 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 757099 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 945863 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 2068321 1994240 ~ 1995536 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 132358 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 135637 4232908 ~ 4235244 (+)
G25958 NA other downstream 452892 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 832200 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 1257061 5354332 ~ 5397886 (+)

Expression


Co-expression Network