hcfc2 (hcfc2,LOC107658821,LOC107592226,LOC107743554,LOC107656316)


Basic Information

Item Value
gene id hcfc2
gene name hcfc2,LOC107658821,LOC107592226,LOC107743554,LOC107656316
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3976307 ~ 3981828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237736.1
GAAGCGCTACGAACTGTTTGCATGCAGTCCGCCTTTGCTCCAATGCAACTGTGCAAAATCAAACCGATAACCTATTATGATTAATAAGGGTCCCATATGGAAACGAGTGCGGTCTTACGCCGGACCTGTTCCGAGGGCGAGGCACGGGCACCGGGCCGTGTCCATCCGAGAGCTGGTGGTTGTGTTTGGAGGTGGAAACGAGGGAATAGCGACCAATCTGCATGTTTATAACTCGGTGACCAGGCAGTGGTTCCTGCCAGCAGTTAGGGGTGATATCCCACCTGGTTGCGCCGCTCATGGCTTTGTTTGTGAAGGCACACGGATCCTGGTGTTCGGAGGGATGGTTGAATTTGGGCAGTATACCAACAGCCTCTATGAACTGCAGGCCAGTCGATGGCTGTGGAAGAAACtgaagccccgcccaccgagGAATGCATCACTTCCATGCCCACGGATTGGCCACAGCTTTACTCTTCATGCTAATAAGTGTTACCTTTTTGGTGGCATGGCCAATGACAGTGAAGACCCAAATGGAAACATACCACGGTATTTAGACGACTTCTACGAGCTGGAGCTGCAGGTCCAGTCTGGGGTTAAAGGCTGGAACATCCCTGAAACCAAAGGTGGAGGTCCGTCAGCCAGAGAATCCCACAGTTCTGTGATGTACTGTGGAAAGGGTTCAAGTGGACCAAAGCTGTACATATTTGGGGGCATGTGTGGGCACAGACTGAATGATTTGTGGCAACTAGACTTTGAGACTATGACTTGGTCATTACCTCTAATCAGAGGTCAGCTGCCATTACCCAGGAGTCTGCACACCTCCAATGTGATTGGAAACAAGTTATATGTGTTTGGAGGCTGGGTTCCCATTGGACAGGCAGAGGATGCGCTCGCCGCCGATGGAGTCAAGTGGGTCTGCACCAACTCTCTTTCCATGCTAAACCTCGACACAATGACGTGGCACGACTTGACAGAAGAAGACCAGCAGGGATCAGCTTCAGACGAACAGCTGGGTGAGCAGGAAGAAGGTAACGCACACTGCCCGAAAGCACGAGCCGGACACTGCGCAGTAACCGTCGGCACTCGTCTGTATGTCTGGAGCGGGCGAGACGGATACAAAAAGTCCCATAACTACCAGGTGTGCTGCAAAGATCTCTGGTACCTGGAAACAGAGAAGCCTTCGACCCCCGGCGCAGTGGTCCTTGTGAAGTCCACAATTAATATGCTGCATGTTGCCTGGAGGCCCCTACCTGCAGCTGAATGTTATTTGCTTCAGCTGCAGCCAATCACATCTCAGTCTGCTTCCACTGAACCACAGTCCACAGCATCGGACGCCGGGGACAGAAAGAAATCTCTACAAATAGACTCCCAGTCAAGTGCAGAAGTTAAAGAAGAGAAAGAATCTTCATCACAGaaaagcattttgatGCCAAAAGAACTAGATCAAGAAGGTGTTTCTGTGATGCCGTCAAACGTGAATAAGGCCGGTCGGCTGAATAGTACATCTCAGTGCCAGAAAGaacGAGATATTCCTCCGATACCATCCCAGCAGTCTGTGGACTCGGTGTGGTTTGATGTGGGtgtatttaaaacactgtaTTGTGAGGTTACACACTACTTCCTGCCTTCTGAGGAAGGTAACATGGCCTCAACTCTGTTTGGTCGAAACTCGTCTGGCATTGAGTGGGAGTTGCCAGGTCCTCATTGTTTTAAGGATCGCGAGAAGCGGGAACTGGCCTCAGGGGTCACATACAAGTTCAGGGTGGCCGGACTGAACAGCCGCGGCCCGGGCAACTTCAGTCCGGTCAGTGAGTTTAAAACCTGCCAGCCCGGGTTTCCTGGAGCGCCGTCTGCTGTAAAGATCACGAAGGATAAAGATTCGGTGCACATCACCTGGGAGCCTCCCACTTCTCCGTCGGGGAAGATCACGGAGTATTCCATGTATCTGGCTGTGAGGAAGAGTCGAGGGAACAGCGCGGAGAGACCTGGCGAGCTGGCCTTTATACGAATCTACCGTGGCACCAAGACCTCGTGCACAGTCAGCGAAAGCCAGCTGAGCAACGCACACATCGACTGCTCGGCGAGGCCTGCTGTCGTCTTCCGCATCGCTGCCAAGAACGAGCAGGGCTACGGCCCGGCCACTCAGATCCGCTGGCTGCAAGATGCGAGTAAACTGAAGTCCTCCGTGACGCAGGCCGTCTCCAGTCCTCCAGCAGCAGAGCCTGACACCACCTGCAGATGAACTCTCTCACCCCTGATGGGTCCACCGCCAAAGCTCGAATGCTTCAGGACTGCATTTCACTCTTTATTATTCCACAACTCCTTTTGCCGTtttaaacaaactcatctgttGACTGAACCGTTTTTCTCCTTTTAATGTCACGGTATCATTTCTACTGTAAGTTTTAGGTTTACCAGTATCAACTAAAAAGGTCatcactgtaaaatgtacatatttaacactttttatactgagtttatacatttatttttattatggattGTTGTAAccacttatttttgtttttccgaATTAAACTGCAtgtaaatttctttaaaatatgctatttttaagAACTCCGTAATTGACCGTAGTTGAAATATAAACAGCTTCACCAAAG

Function

symbol description
hcfc2 Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Orthologous to human HCFC2 (host cell factor C2).

NR:

description
PREDICTED: host cell factor 2

GO: NA

KEGG:

id description
K14966 HCFC; host cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237736.1 True 2621 mRNA 0.50 16 3976307 3981828

Neighbor

gene id symbol gene type direction distance location
chst11 chst11,LOC107592229,LOC107580584,LOC107743617,LOC107656313 coding downstream 5845 3931828 ~ 3970462 (-)
nopchap1 LOC107592230,LOC107581290,LOC107726008 coding downstream 67596 3906486 ~ 3908711 (-)
scube1 scube1,LOC107726032,LOC107592233,LOC107580481 coding downstream 88153 3826024 ~ 3888154 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding downstream 150904 3793939 ~ 3825403 (-)
pnpla3 pnpla3,LOC107726050,LOC107743702,LOC107656255,LOC107592239,LOC107580453,LOC108428138,LOC107658728 coding downstream 216568 3752367 ~ 3759739 (-)
avpr1ab avpr1ab,LOC107725953,LOC107658830,LOC107592260,LOC107744016,LOC107581276 coding upstream 3619 3985447 ~ 3988665 (-)
kics2 si:ch211-125a15.1,LOC107592225,LOC107658829,LOC107726025,LOC107743608,LOC107580661,LOC107656252 coding upstream 59064 4040892 ~ 4046291 (-)
si:ch73-139j3.4 LOC107658832,LOC107725999,LOC107592219,LOC107580782 coding upstream 139614 4121442 ~ 4124829 (-)
LOC122343333 tymp,LOC107725998,LOC107580729,LOC107743597 coding upstream 146312 4128140 ~ 4132867 (-)
cdnf cdnf,LOC107726000,LOC107744152,LOC107592258,LOC107658837,LOC107656217,LOC107581044 coding upstream 180611 4162439 ~ 4164736 (-)
LOC122342502 NA non-coding downstream 190587 3775440 ~ 3785720 (-)
G25739 NA non-coding downstream 205978 3770121 ~ 3770329 (-)
G25732 NA non-coding downstream 234502 3710024 ~ 3741805 (-)
G25731 NA non-coding downstream 268413 3707589 ~ 3707894 (-)
G25706 NA non-coding downstream 275001 3647063 ~ 3701306 (-)
G25853 LOC107725886,LOC107592223,LOC107658822 non-coding upstream 120902 4102730 ~ 4106259 (-)
G25871 NA non-coding upstream 194426 4176254 ~ 4176625 (-)
LOC122342390 NA non-coding upstream 205139 4186967 ~ 4188728 (-)
LOC122342421 NA non-coding upstream 211731 4193559 ~ 4195145 (-)
LOC122342441 NA non-coding upstream 215017 4196845 ~ 4198357 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 357940 3602356 ~ 3618367 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other downstream 374316 3601000 ~ 3601991 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other downstream 399184 3534662 ~ 3577123 (-)
LOC122342805 NA other downstream 954795 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 964093 2999882 ~ 3012214 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 152149 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 283098 4264926 ~ 4267495 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other upstream 749396 4731224 ~ 4757827 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other upstream 1103262 5085090 ~ 5094640 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 1737184 5719012 ~ 5720250 (-)

Expression


Co-expression Network