samm50l (samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535)


Basic Information

Item Value
gene id samm50l
gene name samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3889437 ~ 3895875 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237747.1
CACCTAGCAGATGCGTGTCATGGCGTCCTCCTTGAAGGGGGTTGGGTTGACTGCTtcataatagcaataatagtgCGATATTTTACATTCCCACGGCTGAGCGGTTTCAATACGTTTAAGATAGTATCGCACTAGCAATGGGGACTGTGCACGCACGGaGTATGGATTCCTACCCCATGCATGGGCGAGACCTGGGCGTCAACCCAGATGATTTGGAAGTGATGGAGGCGGTGCAAGAAACTAAACAAGAGGTTTTAGAAAATAAAGATGTTGTCGTGCAGCATGTCAACATTGAAGGCCTGGGCAGAACTAAAGAGGATTACCTGGGCTATGAAATCTCTGATGTCTTCACTGCCAGGAACCTGGTTGAAGTGATGAGAAAATCCCACGAGGCCAGACAGAAGTTGCTCCGTCTAGGCATATTTAAAGAAGTGGAGGTGGTGATTGACATTTCAGAAGGAACAGACGCACTGCCAAATGGACTCGATGTTACATTTGAGGTGACTGAGCTTAAACGACTTACTGGCAGTTATAATACCATGGTTGGAAACAATGAAGGCAGTATGGTCTTGGGCGTTAAACTTCCTAATGTTTTAGGCCGAGGAGAGAAGCTCACCTTTCAGTTTTCCTATGGAACGAAGGAGACTTCATATGGCCTGTCCTTCTTTAAACCACAGTCAGGATTTTATGAACGCAACTTTACTCTAAACCTGTACAAAGTCACCGGCCAGTTCCCATGGAGCTCTCTAAAAGAGACTGACCGAGGGGTTTCTACAGAGCTCaatTTCCCTCTGTGGATGACGGATCACACACTGAAATGGGAGGGAGTGTGGCGTGAACTGGGATGTCTGGCCCGCAGCGCCTCCTTCGCTGTGAGAGAGGAGAGCGGCCACACTCTTAAATCCGCCCTTTCTCACACCATGGTAATAGACACCAGGAACTCTGCCATCTTGCCCCGAAGAGGTGCCTTACTGCGGATCAGCCAGGAGCTGGCGGGATACACCGGCGGAGACGCCAGCTTTCTCAAAGAAGATGTTGAGCTGCAGCTTAACAAACCATTTATCTGGGGATCGGTGTTATCTGCATCTTTATGGGGAGGGATGATCTATCCTCTTGGGGGTCAGCCTACCTCCATTGCTGACAgGTTCTACCTGGGCGGCCCAACCAGTGTGAGAGGTTTTGGCATGTACAGTATAGGCCCTCAGAGTGAAGGTGATTATCTGGGTGGGGAAGCGTATTGGGCCGGTGGGCTTCACCTGTATACGCCCCTCCCCTTTCGCTCAAACAAGCGTGGCCTGGCTGACCTCTTCAGAACACACTTCTTCCTCAATGCTGGAAACCTTTGCAACCTCAACTACGgAGAGGGACCACACGCGCATCTGCAGAAGCTTGCGGAGTGTATACGCTGGTCTTACGGCGCAGGAATAATTCTACGACTGGGAAACATTGCTAGGCTCGAACTTAATTACTGCTTCCCCATGGGTGTCCAGAGCGGAGACAGGATATGCGACGGTGTGCAGTTCGGAGCAGGCATACGTTTCCTGTGATCTCGTGAAACTGTTAAAACAGGGATTTGTGGGATAGCGATTTTTGGATTTGGATCTGCATGCACACTCTTGAGGATGCACTTCGTTTTTGTACCTGTAAGGCAAAAAATACTTAGTTTTCCTGCATACCTCTCACTGTTTGAATAAGAGTCCAGGGTTTAGCGAAGGACATTGAAACCTTATCCAGTCTGCGAAGAGACTGCAGGTGCTAAAATAGTTAggcttttacagttttttttccaatgagGAGAGCTTTAGAGATTATTCACGGTCAAGCTGATAAACCAGTGATTTAATTCAAATCCACACCTCCTTCCACTCAAATGCGTGCTGTATTATAAGCAGTCCCTGCTGTTGCGATGAAAGCCCTTGGTTAAATTGTGGATTATTAAATAACGCATTTATCCTTTAGCCATTCGACACGAACAAAGcacctttttttcccttttaaatcTGACTGTTTAATGTTTTGGTCAGTTGTCTCCTCTAATGCCAAACTAggtaaattaattcatttaaactgaCCCTCACAGAATTAGCAGTGAGTTTCTTCCAGCCATAAGTCCCCTTTGTGAGATCCACCAGCAGTGCTTTATTATTAGGAAACTTTTTATTACTCTCTGAActaatttatgtttattgtgcacaaaaaaaaataaactttttggtTCCCtgatgaattta

Function

symbol description
samm50 Acts upstream of or within liver development. Predicted to be located in mitochondrial outer membrane. Predicted to be part of SAM complex. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in non-alcoholic fatty liver disease. Orthologous to human SAMM50 (SAMM50 sorting and assembly machinery component).
samm50l Predicted to be involved in cristae formation; mitochondrial respiratory chain complex assembly; and protein insertion into mitochondrial outer membrane. Predicted to be located in mitochondrial outer membrane. Predicted to be part of SAM complex. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in non-alcoholic fatty liver disease. Orthologous to human SAMM50 (SAMM50 sorting and assembly machinery component).

NR:

description
PREDICTED: sorting and assembly machinery component 50 homolog

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K07277 SAM50, TOB55, bamA; outer membrane protein insertion porin family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237747.1 True 2231 mRNA 0.46 15 3889437 3895875

Neighbor

gene id symbol gene type direction distance location
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding upstream 119594 3760584 ~ 3769843 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding upstream 188223 3678245 ~ 3701214 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding upstream 214144 3660617 ~ 3675293 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding upstream 288431 3579628 ~ 3601006 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding upstream 508265 3311653 ~ 3381172 (+)
aldh1l2 aldh1l2,LOC107580561,LOC107592231,LOC107743541,LOC107658818,LOC107656317 coding downstream 1202 3897077 ~ 3905931 (+)
slc41a2b slc41a2b,slc41a2,LOC107658826,LOC107726006,LOC107743571,LOC107580572,LOC107656312 coding downstream 13268 3909143 ~ 3959260 (+)
nfyba nfyb,nfyba,LOC107656315,LOC107658836,LOC107592261,LOC107581291,LOC107743639,LOC106561000 coding downstream 77200 3973075 ~ 3975787 (+)
srgap1b srgap1b,LOC107658816,LOC107580603,LOC107743491,LOC107656311,LOC107725889 coding downstream 112466 4008341 ~ 4039405 (+)
ipo8 ipo8,LOC107726055,LOC107580646 coding downstream 151176 4047051 ~ 4062047 (+)
LOC122343347 NA non-coding upstream 81539 3806939 ~ 3807898 (+)
G25537 NA non-coding upstream 180585 3708537 ~ 3708852 (+)
G25536 NA non-coding upstream 182373 3706859 ~ 3707064 (+)
G25535 NA non-coding upstream 187066 3701834 ~ 3702371 (+)
G25534 NA non-coding upstream 187683 3701428 ~ 3701754 (+)
LOC122343346 NA non-coding downstream 92808 3988683 ~ 4007148 (+)
G25823 tymp,LOC107725998,LOC107580729,LOC107743597 non-coding downstream 233048 4128923 ~ 4129250 (+)
G25824 NA non-coding downstream 233464 4129339 ~ 4129628 (+)
G25825 NA non-coding downstream 234269 4130144 ~ 4130422 (+)
G25827 NA non-coding downstream 236233 4132108 ~ 4132552 (+)
G25551 NA other upstream 150843 3737502 ~ 3738594 (+)
G25514 NA other upstream 387343 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 582679 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 771443 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1893901 1994240 ~ 1995536 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 333754 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 337033 4232908 ~ 4235244 (+)
G25958 NA other downstream 654288 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 1033596 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 1458457 5354332 ~ 5397886 (+)

Expression


Co-expression Network