chst11 (chst11,LOC107592229,LOC107580584,LOC107743617,LOC107656313)


Basic Information

Item Value
gene id chst11
gene name chst11,LOC107592229,LOC107580584,LOC107743617,LOC107656313
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3931828 ~ 3970462 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237752.1
AAGGTGGTGCACTCCAGGGAGCTGCGCTGAGATCTCTGAGACACGGACGCAGGCGGCATCAGCATCAAACACAGACCCGCTGTACGGGGCTCCGTCCCTCCGTCTCTCCGTGCCCAGCCATGAAACAGACGTTACTGGACCTCATGAGGATGAGTAGGATCTGCCGGATGGTGCTGGCCACTTGTTTGGGATCTTTTATTCTGGTCATCTTCTATTTCCAAAGTATGTTCCAACCAGtTATGAGGCGGAACCCGTTCGCAGCGGAGGGCTGCTGCAGGAAGGGCTCTAGAAACGCCCTGCAGGAGCTGTACAATCCCACACAGgCTGAGTTTTCTGCAGCGGCGGTGTTGCATCAGGCCCGGCGGGATCAAGTGGCAGACACATGTCGTGCCTACAGTGCGTCCAGCCACAAGCGCCGCGTCCTGACTCCCAGCGACCTGAAGCACCTGGTGGTGGATGAGGAACACGAGCTCATCTACTGCTACGTCCCTAAAGTGGCCTGCACCAACTGGAAGCGGGTCATGATGGTGCTGAGCGGCCGGGGCAAGTACACCGACCCCATGGAGATCCCATCCAACGAGGCCCACGTGCCCTCCAACCTTAAGACCCTCAACCAGTACAGCATTCCCGACATCAACCACCGGCTCAAGAGCTACCTCAAGTTCCTCTTCGTGCGCGAGCCCTTCGAACGGTTGGTGTCGGCCTACCGTAACAAATTCACGCTCCGGTACAACACCTCGTTTCACAAACGCTACGGGACGAAGATCGTGCGGCGCTACCGCAAGAATGCAACCACCGAGGCGCTGCAGAGCGGCGCCGACGTGAAATTCCAAGAGTTCGCCGAGTACCTGGTGGACCCGGGGACTCAAAGAGAAGCTCCGCTCAACGAACACTGGCAGACGGTCTACTCGCTCTGCCACCCCTGCCACATCCACTACGACCTGGTGGGCAAGTACGAGACTCTGGAGGAGGACGCCAACTACGTGCTCAAACTGGCAGGGGTGGGCGACTCCTTGCGCTTCCCAACATACGCAAAATCCACCCGTACCACCGACCAAATGGCGGCCATGTTTTTCAACAACATCAGCTCTCAGCAGCAAGGCCAGCTCTACCAGCTCTACAAACTGGACTTTCTAATGTTCAACTACTCTATTCCCAGCTACCTAAAACTGCAGTAGACACACGTACGCAGCTGCGCACACGTTCCGAGCTTGTTCAACAAGGTTGAGCAACGGGAGAAGGGCCGTCGCTGAAAGACACAAGCGGGGGAATCAACCGAGCACTctaatgtaaaattgtatttatatccGCAGGGACGGTTGCTTTATTTCAAGATGAGATTAAGGAGCTATCGGTCAACTGCAAATGCGGACCACTTTGAAAGTCTGATGTATTTGCCCATCGAATTGTACATTTTCAGTGTAAAGGCTCCTGTTCCCAGACATCAAAAGCAATATGACAGATTCTGAGCTATACCTGCTCAAACGGTTTATCTAATAATATACTCAGCCAGCTGCCGCCACCATTATTGAAGCTTCACAGAAAGGAGCGCCTAGACTAATAATAAGACTCAAGATACAATCAGACTTGTTCTGGCTTCTATTCCCCACTTCTAATTTCGTGTTCCCTTTGGAAGTTCCCTCGCTTCTCTCCCATACTCAGAcggcctttgtgtgtgtgtatttatacagtgCATATTTAAAGGTGCACACTAAAataagaagacaaaaaaagagatgatGCCTCCTGAAGGGGGTGTGTCTAAATGTGAGTGACAGGCAGGGGCCCCGCCCACTTGGTCAGTCAGGGAGCATCTGTAGCAGTcgggaggtcagaggtcactgcGGGTTGGCCTCAAGCACACTGTTCCCACAACCCCTCCTCCCTCAGTTGGTCTTCTTAAAGTAGGATTTtgggtgttttgttttattttgtatttgtttataatggAAAAAGTTGCTGCGAGCAGCACgttataatattatttgaattactGTGTGAAATAGAGATGAGAAagacttaatattttgtttccaGGAAAGGAAATCAGCTTAGAGCTAGAGACTTTCTGAGGTTTAATTGTCATGATTGGTTCATATTTCTTCTTGCCTCATATGCAGAACACTGTTGCTCGGATACCTCGCTGGTTGTTTTGTGACGGGTGTAAGGAAACGGGCAGGACTTTGTTTTCTGAGCTGTTCTCATGGGAAAGTTTCACACAGTGGCgtttgagagaaagagagagacagaaaatgCAGGCAAATCTGTTCCATCCATTAGATGATTTTAAACGTCTTTTCCAATTTGAGTTCAAAGGAACACCCTTTAATTTAGCAAGCTGTCTTTTATGATTCTAATTTGCTTTGACTGTGcacaaaaattatgaaaattgctTATTTATGTGTGCGATGGCCACAAGTGGGTGCGTCCTAGTGCTTTATCTCAATGGCTTTGTCAGTAGGAGATCTTGACTATGGTTAAAGGCTTCTGTTAGCTCCCACTTCTCTCTGCTTTTTAGGAAAAGTCCTGGGTTTATTTGGCCTGAATAAGTGAGTGCTGATTAGCAGGATTTTAAGTCCTGTAGAGCAGGGTCTTTAATGAAGACCACACACACAAGTGATTCAGAGTGTAAAACGTGGCAAAAAAgcaaaggagaagaaaaaaaaaaaaaacaagctacgTTATCAACCTCTCTGTGCAGTACAGCTATTCCTTTCTCACACTGCTTTTTCTAAATCtctaaaagctaaaaaaaagattcaaattcTCATGCAGACCCCTTAACATGCAAAACCAGTAATTAcgaaactatttctttaaaccGAGTTGTCATTTAGTAGCATAATTATGGTAACTGACTGGCTGGTTAGGACAAAAACTGGCATTTACATGCCAGAGATTCCAGATGATAAATTTAGCGTGTGTTATCTTTCACAAAGACACAGAAAACCTTTATCTCTTTGTGTGTTCAAATCTCAGATCTCATCTTCTTCAGAACAGGAAATGAATCTGAAGCGAAGCGAATCACTCAAGACTTTATTTTTGAATCATCAGCTCAGAAAACAAAGTATGCCTGAATGGTTTCTCGGTTTATAaactgtttatttcatttgttctGTAACAACAAACACGGTACAGCCTCATTAGCGCCCACACGACAGCCACGCTAATACACGCATTAGCGCCCACATTAGCAGGCACAGTGCCTTTCAAACTGTCACTCTATCACATGTAGTACAGCTCGCTCACGTTGCAtgcagcatttttcatttttagagacACAAGACAtgctttgctttatttatgATTCATGTTTCCAGCTGAGCGCTTCCTTCAGATGGAGGTTTAGGCTAACTTAGCTAACGTTACACACTGTAGTACAGAACAGCTAGGCTCACCGTCCGCTTACCTGTAACTCTATGTGCCTGTTTAACAACCAGTGTCTACATGTGGTTTCCGTATTTGTTTTCAACTCATGTCCACTTGCTTTCTTGAGCTCACAAACATTCTCAAACTATCcgcagtttaatttatttatttattcctccTCTGTATTCAGGATGGACTCTGCCGGGTCACTGGGTCAGACCCTCgcactgtaaatgaaaaaaatccaaaccAAGTGAACTGTCGGATCAATGCGCTCCCTGGAGAACGCGCTtacactttctctctctatctccttCTCTCCTCTGTTTTCTCAATAAAGCTGAAACTGAAACCCAA
>XM_043237753.1
GAAGGTGGTGCACTCCAGGGAGCTGCGCTGAGATCTCTGAGACACGGACGCAGGCGGCATCAGCATCAAACACAGACCCGCTGTACGGGGCTCCGTCCCTCCGTCTCTCCGTGCCCAGCCATGAAACAGACGTTACTGGACCTCATGAGGATGAGTAGGATCTGCCGGATGGTGCTGGCCACTTGTTTGGGATCTTTTATTCTGGTCATCTTCTATTTCCAAAtTATGAGGCGGAACCCGTTCGCAGCGGAGGGCTGCTGCAGGAAGGGCTCTAGAAACGCCCTGCAGGAGCTGTACAATCCCACACAGgCTGAGTTTTCTGCAGCGGCGGTGTTGCATCAGGCCCGGCGGGATCAAGTGGCAGACACATGTCGTGCCTACAGTGCGTCCAGCCACAAGCGCCGCGTCCTGACTCCCAGCGACCTGAAGCACCTGGTGGTGGATGAGGAACACGAGCTCATCTACTGCTACGTCCCTAAAGTGGCCTGCACCAACTGGAAGCGGGTCATGATGGTGCTGAGCGGCCGGGGCAAGTACACCGACCCCATGGAGATCCCATCCAACGAGGCCCACGTGCCCTCCAACCTTAAGACCCTCAACCAGTACAGCATTCCCGACATCAACCACCGGCTCAAGAGCTACCTCAAGTTCCTCTTCGTGCGCGAGCCCTTCGAACGGTTGGTGTCGGCCTACCGTAACAAATTCACGCTCCGGTACAACACCTCGTTTCACAAACGCTACGGGACGAAGATCGTGCGGCGCTACCGCAAGAATGCAACCACCGAGGCGCTGCAGAGCGGCGCCGACGTGAAATTCCAAGAGTTCGCCGAGTACCTGGTGGACCCGGGGACTCAAAGAGAAGCTCCGCTCAACGAACACTGGCAGACGGTCTACTCGCTCTGCCACCCCTGCCACATCCACTACGACCTGGTGGGCAAGTACGAGACTCTGGAGGAGGACGCCAACTACGTGCTCAAACTGGCAGGGGTGGGCGACTCCTTGCGCTTCCCAACATACGCAAAATCCACCCGTACCACCGACCAAATGGCGGCCATGTTTTTCAACAACATCAGCTCTCAGCAGCAAGGCCAGCTCTACCAGCTCTACAAACTGGACTTTCTAATGTTCAACTACTCTATTCCCAGCTACCTAAAACTGCAGTAGACACACGTACGCAGCTGCGCACACGTTCCGAGCTTGTTCAACAAGGTTGAGCAACGGGAGAAGGGCCGTCGCTGAAAGACACAAGCGGGGGAATCAACCGAGCACTctaatgtaaaattgtatttatatccGCAGGGACGGTTGCTTTATTTCAAGATGAGATTAAGGAGCTATCGGTCAACTGCAAATGCGGACCACTTTGAAAGTCTGATGTATTTGCCCATCGAATTGTACATTTTCAGTGTAAAGGCTCCTGTTCCCAGACATCAAAAGCAATATGACAGATTCTGAGCTATACCTGCTCAAACGGTTTATCTAATAATATACTCAGCCAGCTGCCGCCACCATTATTGAAGCTTCACAGAAAGGAGCGCCTAGACTAATAATAAGACTCAAGATACAATCAGACTTGTTCTGGCTTCTATTCCCCACTTCTAATTTCGTGTTCCCTTTGGAAGTTCCCTCGCTTCTCTCCCATACTCAGAcggcctttgtgtgtgtgtatttatacagtgCATATTTAAAGGTGCACACTAAAataagaagacaaaaaaagagatgatGCCTCCTGAAGGGGGTGTGTCTAAATGTGAGTGACAGGCAGGGGCCCCGCCCACTTGGTCAGTCAGGGAGCATCTGTAGCAGTcgggaggtcagaggtcactgcGGGTTGGCCTCAAGCACACTGTTCCCACAACCCCTCCTCCCTCAGTTGGTCTTCTTAAAGTAGGATTTtgggtgttttgttttattttgtatttgtttataatggAAAAAGTTGCTGCGAGCAGCACgttataatattatttgaattactGTGTGAAATAGAGATGAGAAagacttaatattttgtttccaGGAAAGGAAATCAGCTTAGAGCTAGAGACTTTCTGAGGTTTAATTGTCATGATTGGTTCATATTTCTTCTTGCCTCATATGCAGAACACTGTTGCTCGGATACCTCGCTGGTTGTTTTGTGACGGGTGTAAGGAAACGGGCAGGACTTTGTTTTCTGAGCTGTTCTCATGGGAAAGTTTCACACAGTGGCgtttgagagaaagagagagacagaaaatgCAGGCAAATCTGTTCCATCCATTAGATGATTTTAAACGTCTTTTCCAATTTGAGTTCAAAGGAACACCCTTTAATTTAGCAAGCTGTCTTTTATGATTCTAATTTGCTTTGACTGTGcacaaaaattatgaaaattgctTATTTATGTGTGCGATGGCCACAAGTGGGTGCGTCCTAGTGCTTTATCTCAATGGCTTTGTCAGTAGGAGATCTTGACTATGGTTAAAGGCTTCTGTTAGCTCCCACTTCTCTCTGCTTTTTAGGAAAAGTCCTGGGTTTATTTGGCCTGAATAAGTGAGTGCTGATTAGCAGGATTTTAAGTCCTGTAGAGCAGGGTCTTTAATGAAGACCACACACACAAGTGATTCAGAGTGTAAAACGTGGCAAAAAAgcaaaggagaagaaaaaaaaaaaaaacaagctacgTTATCAACCTCTCTGTGCAGTACAGCTATTCCTTTCTCACACTGCTTTTTCTAAATCtctaaaagctaaaaaaaagattcaaattcTCATGCAGACCCCTTAACATGCAAAACCAGTAATTAcgaaactatttctttaaaccGAGTTGTCATTTAGTAGCATAATTATGGTAACTGACTGGCTGGTTAGGACAAAAACTGGCATTTACATGCCAGAGATTCCAGATGATAAATTTAGCGTGTGTTATCTTTCACAAAGACACAGAAAACCTTTATCTCTTTGTGTGTTCAAATCTCAGATCTCATCTTCTTCAGAACAGGAAATGAATCTGAAGCGAAGCGAATCACTCAAGACTTTATTTTTGAATCATCAGCTCAGAAAACAAAGTATGCCTGAATGGTTTCTCGGTTTATAaactgtttatttcatttgttctGTAACAACAAACACGGTACAGCCTCATTAGCGCCCACACGACAGCCACGCTAATACACGCATTAGCGCCCACATTAGCAGGCACAGTGCCTTTCAAACTGTCACTCTATCACATGTAGTACAGCTCGCTCACGTTGCAtgcagcatttttcatttttagagacACAAGACAtgctttgctttatttatgATTCATGTTTCCAGCTGAGCGCTTCCTTCAGATGGAGGTTTAGGCTAACTTAGCTAACGTTACACACTGTAGTACAGAACAGCTAGGCTCACCGTCCGCTTACCTGTAACTCTATGTGCCTGTTTAACAACCAGTGTCTACATGTGGTTTCCGTATTTGTTTTCAACTCATGTCCACTTGCTTTCTTGAGCTCACAAACATTCTCAAACTATCcgcagtttaatttatttatttattcctccTCTGTATTCAGGATGGACTCTGCCGGGTCACTGGGTCAGACCCTCgcactgtaaatgaaaaaaatccaaaccAAGTGAACTGTCGGATCAATGCGCTCCCTGGAGAACGCGCTtacactttctctctctatctccttCTCTCCTCTGTTTTCTCAATAAAGCTGAAACTGAAACCCAA

Function

symbol description
chst11 Enables chondroitin 4-sulfotransferase activity. Acts upstream of or within chondroitin sulfate biosynthetic process; motor neuron axon guidance; and muscle organ development. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; notochord; pectoral fin bud; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CHST11 (carbohydrate sulfotransferase 11).

NR:

description
PREDICTED: carbohydrate sulfotransferase 11 isoform X1

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047756 chondroitin 4-sulfotransferase activity molecular_function

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237752.1 True 3726 mRNA 0.46 3 3931828 3970461
XM_043237753.1 False 3712 mRNA 0.46 3 3931828 3970462

Neighbor

gene id symbol gene type direction distance location
nopchap1 LOC107592230,LOC107581290,LOC107726008 coding downstream 23117 3906486 ~ 3908711 (-)
scube1 scube1,LOC107726032,LOC107592233,LOC107580481 coding downstream 43674 3826024 ~ 3888154 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding downstream 106425 3793939 ~ 3825403 (-)
pnpla3 pnpla3,LOC107726050,LOC107743702,LOC107656255,LOC107592239,LOC107580453,LOC108428138,LOC107658728 coding downstream 172089 3752367 ~ 3759739 (-)
ttll12 ttll12,LOC107581273 coding downstream 180435 3725176 ~ 3751393 (-)
hcfc2 hcfc2,LOC107658821,LOC107592226,LOC107743554,LOC107656316 coding upstream 5845 3976307 ~ 3981828 (-)
avpr1ab avpr1ab,LOC107725953,LOC107658830,LOC107592260,LOC107744016,LOC107581276 coding upstream 14985 3985447 ~ 3988665 (-)
kics2 si:ch211-125a15.1,LOC107592225,LOC107658829,LOC107726025,LOC107743608,LOC107580661,LOC107656252 coding upstream 70430 4040892 ~ 4046291 (-)
si:ch73-139j3.4 LOC107658832,LOC107725999,LOC107592219,LOC107580782 coding upstream 150980 4121442 ~ 4124829 (-)
LOC122343333 tymp,LOC107725998,LOC107580729,LOC107743597 coding upstream 157678 4128140 ~ 4132867 (-)
LOC122342502 NA non-coding downstream 146108 3775440 ~ 3785720 (-)
G25739 NA non-coding downstream 161499 3770121 ~ 3770329 (-)
G25732 NA non-coding downstream 190023 3710024 ~ 3741805 (-)
G25731 NA non-coding downstream 223934 3707589 ~ 3707894 (-)
G25706 NA non-coding downstream 230522 3647063 ~ 3701306 (-)
G25853 LOC107725886,LOC107592223,LOC107658822 non-coding upstream 132268 4102730 ~ 4106259 (-)
G25871 NA non-coding upstream 205792 4176254 ~ 4176625 (-)
LOC122342390 NA non-coding upstream 216505 4186967 ~ 4188728 (-)
LOC122342421 NA non-coding upstream 223097 4193559 ~ 4195145 (-)
LOC122342441 NA non-coding upstream 226383 4196845 ~ 4198357 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 313461 3602356 ~ 3618367 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other downstream 329837 3601000 ~ 3601991 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other downstream 354705 3534662 ~ 3577123 (-)
LOC122342805 NA other downstream 910316 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 919614 2999882 ~ 3012214 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 163515 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 294464 4264926 ~ 4267495 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other upstream 760762 4731224 ~ 4757827 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other upstream 1114628 5085090 ~ 5094640 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 1748550 5719012 ~ 5720250 (-)

Expression


Co-expression Network