nfyba (nfyb,nfyba,LOC107656315,LOC107658836,LOC107592261,LOC107581291,LOC107743639,LOC106561000)


Basic Information

Item Value
gene id nfyba
gene name nfyb,nfyba,LOC107656315,LOC107658836,LOC107592261,LOC107581291,LOC107743639,LOC106561000
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3973075 ~ 3975787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237758.1
TGCAACCTCTTCGGACGTTTACGATCTCATTTCGAGCGCGCCCCCTGGTGACCGACATAAAGGCTTGCACAAACCGTCTCGCGCAGCTCCATTTCCGGCGTCCAATCAAGTTGCAGCGCGAGCGCGAGTCAGatgGACGGAGACAGCAGCACCACAGATACCACTCAGTTAGGAATAACTGGAGAGTATATGACAGGAGGAACATATGTCTTACAGACCCAGGATGatgATGGGGATGAAAGTTTCAATGACCACGAGGATGGTAACGGCGGTAAAGACCATTTTCGAGAGCAGGACATCTACCTTCCCATCGCAAATGTTGCTCGCATCATGAAAAATGCCATCCCACAGACTGGAAAGATAGCGAAGGATGCAAAAGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACATCTGAGGCCAGCGAAAGATGCCATCAAGAGAAACGCAAGACCATCAACGGAGAGGACATCTTGTTCGCTATGTCCACGCTGGGTTTCGACATGTACGTGGAGCCGCTTAAACTCTACCTGCAGAAGTTCAGAGAGGCAATGAAGGGTGAGAAAGGCATCAATACTGTTTCAGTCAGCGAAGGCCTTGGAGAAGAGCTTACAGATGACAGTTTCACCGGTCAGTTGCCTGCAGGACTGATCACTGCTGATGGCCAGCAACAGAATGTGATGGTATATACCACCTCATACCAGCAGATCCCTGGTGTTCAGCAGATACAATTCTCATGACCGAAGACCGGCTCGACTTCTATCTAGTAGCCTGTCCAGTGTCCAGACAGAATTATCTTTTGCCTTGCAAAGTTTTCAGGTCAGTGCTGGAAGACCAAGAGATGCCTGGTTACCAGAGCAGGAACAAAAGTGCCTGTTGCCAGGAGGCTGATTTGATCTTAAGTGATGTCTCGTAATTCATTCAGTATTATATTTAGGCCAGTTTGTTTTGAACGGTCTGCTTGGTCCAGGCCGAACCAAATTATGACTTATTTTTTGGGGAGGGGTTccttgtatttaataatttttaaagtttggaATGGGGGCGGTGGGAAAATAGAAAGGCCATGTTGACAATTTACATTCCCAGAATTAAGGGAGTTCTCATTTGATATGACATTTGGTCTTAATTAATTAACCTATTGAACTGATATTGTTATTCTgattctttgaataaaaaagtgATCTGTC
>XM_043237759.1
GGTCAAATGATCCGCTTCAGCGGTAATTCTCGTGTTTAACGGGTAGAAAAGGCCGATACCGGCAGGTCTTTACAGGTTTTTACCAGGCCGAAGCAGCCGTTAAATGCAGGAAGTCTTAAATGATTGAATGTTTGAGGATGGatgGACGGAGACAGCAGCACCACAGATACCACTCAGTTAGGAATAACTGGAGAGTATATGACAGGAGGAACATATGTCTTACAGACCCAGGATGatgATGGGGATGAAAGTTTCAATGACCACGAGGATGGTAACGGCGGTAAAGACCATTTTCGAGAGCAGGACATCTACCTTCCCATCGCAAATGTTGCTCGCATCATGAAAAATGCCATCCCACAGACTGGAAAGATAGCGAAGGATGCAAAAGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACATCTGAGGCCAGCGAAAGATGCCATCAAGAGAAACGCAAGACCATCAACGGAGAGGACATCTTGTTCGCTATGTCCACGCTGGGTTTCGACATGTACGTGGAGCCGCTTAAACTCTACCTGCAGAAGTTCAGAGAGGCAATGAAGGGTGAGAAAGGCATCAATACTGTTTCAGTCAGCGAAGGCCTTGGAGAAGAGCTTACAGATGACAGTTTCACCGGTCAGTTGCCTGCAGGACTGATCACTGCTGATGGCCAGCAACAGAATGTGATGGTATATACCACCTCATACCAGCAGATCCCTGGTGTTCAGCAGATACAATTCTCATGACCGAAGACCGGCTCGACTTCTATCTAGTAGCCTGTCCAGTGTCCAGACAGAATTATCTTTTGCCTTGCAAAGTTTTCAGGTCAGTGCTGGAAGACCAAGAGATGCCTGGTTACCAGAGCAGGAACAAAAGTGCCTGTTGCCAGGAGGCTGATTTGATCTTAAGTGATGTCTCGTAATTCATTCAGTATTATATTTAGGCCAGTTTGTTTTGAACGGTCTGCTTGGTCCAGGCCGAACCAAATTATGACTTATTTTTTGGGGAGGGGTTccttgtatttaataatttttaaagtttggaATGGGGGCGGTGGGAAAATAGAAAGGCCATGTTGACAATTTACATTCCCAGAATTAAGGGAGTTCTCATTTGATATGACATTTGGTCTTAATTAATTAACCTATTGAACTGATATTGTTATTCTgattctttgaataaaaaagtgATCTGTC

Function

symbol description
nfyba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of CCAAT-binding activity factor complex. Is expressed in female organism. Orthologous to human NFYB (nuclear transcription factor Y subunit beta).
nfyb Enables DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and DNA-binding transcription factor binding activity. Contributes to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of CCAAT-binding activity factor complex and protein-DNA complex.

NR:

description
PREDICTED: nuclear transcription factor Y subunit beta-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K08065 NFYB, HAP3; nuclear transcription Y subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237758.1 False 1200 mRNA 0.46 7 3973075 3975787
XM_043237759.1 True 1209 mRNA 0.45 7 3973225 3975787

Neighbor

gene id symbol gene type direction distance location
slc41a2b slc41a2b,slc41a2,LOC107658826,LOC107726006,LOC107743571,LOC107580572,LOC107656312 coding upstream 13815 3909143 ~ 3959260 (+)
aldh1l2 aldh1l2,LOC107580561,LOC107592231,LOC107743541,LOC107658818,LOC107656317 coding upstream 67144 3897077 ~ 3905931 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding upstream 77200 3889437 ~ 3895875 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding upstream 203232 3760584 ~ 3769843 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding upstream 271861 3678245 ~ 3701214 (+)
srgap1b srgap1b,LOC107658816,LOC107580603,LOC107743491,LOC107656311,LOC107725889 coding downstream 32554 4008341 ~ 4039405 (+)
ipo8 ipo8,LOC107726055,LOC107580646 coding downstream 71264 4047051 ~ 4062047 (+)
tmtc1 tmtc1,LOC107725887,LOC107656308,LOC107592224,LOC107580673,LOC107658819,LOC102198433 coding downstream 88070 4063857 ~ 4097271 (+)
ovch1 LOC107658825,LOC107592259,LOC107736419,LOC107743570 coding downstream 122276 4098063 ~ 4102180 (+)
lmf2b LOC107658822,LOC107592223,LOC107656307,LOC107580684,LOC107743574,LOC107725886 coding downstream 126991 4102778 ~ 4113721 (+)
LOC122343347 NA non-coding upstream 165177 3806939 ~ 3807898 (+)
G25537 NA non-coding upstream 264223 3708537 ~ 3708852 (+)
G25536 NA non-coding upstream 266011 3706859 ~ 3707064 (+)
G25535 NA non-coding upstream 270704 3701834 ~ 3702371 (+)
G25534 NA non-coding upstream 271321 3701428 ~ 3701754 (+)
LOC122343346 NA non-coding downstream 12896 3988683 ~ 4007148 (+)
G25823 tymp,LOC107725998,LOC107580729,LOC107743597 non-coding downstream 153136 4128923 ~ 4129250 (+)
G25824 NA non-coding downstream 153552 4129339 ~ 4129628 (+)
G25825 NA non-coding downstream 154357 4130144 ~ 4130422 (+)
G25827 NA non-coding downstream 156321 4132108 ~ 4132552 (+)
G25551 NA other upstream 234481 3737502 ~ 3738594 (+)
G25514 NA other upstream 470981 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 666317 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 855081 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1977539 1994240 ~ 1995536 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 253842 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 257121 4232908 ~ 4235244 (+)
G25958 NA other downstream 574376 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 953684 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 1378545 5354332 ~ 5397886 (+)

Expression


Co-expression Network