nopchap1 (LOC107592230,LOC107581290,LOC107726008)


Basic Information

Item Value
gene id nopchap1
gene name LOC107592230,LOC107581290,LOC107726008
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3906486 ~ 3908711 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237762.1
GAGGCTCGGCCCTGCAACACGGAAGTTACGATGTGGTACAAAAACACATGTGGATACAAGTGAAACAGTACATGTGAAGAACTAACCATGgctcaaacacaaaacaatatcaAGAAAACCTCTTCTAGAGACTTGTTGGCCTGTGGCAACGGAAAAGGAATCCATGAGAAACTTCTGTTGAACTCTAAAAGTGCTTCACTGCAGACAGAAAGGGTCCCCAGAAGTACTGTCTTGGACAAACTGCAAAGCTTCCTTCCCCAAATCGCCCAAGCCAATGAGTCTCTAAGACAACAGATGGACGAGGCTCCCACTGGTTTCTATGACATTGAGAGTGTGGAGGACGCTGAGAAAATCATCGAGATGGACGTGGCTCTGGTTGAACTGGAGGATTCAGACAGCAGTGAGGAGGAAGagtcgtcgtcgtcgtcatcatcctcatcctcctcatctgAGGAAGACCGCTCAGAGGACGAGCTGCAAACTGTCACTGCAAAGATGCTCAAACTTCCAGGTGGCAGAAAAAGAAAGGCCAACATCCAGGTGATTAAGAAAGAGGGCGAGTAAGAGAACACGTACTTCCCACTGGAGCTATAGGACTCACGCCAGGCCATTTCTATGCctcttaaagaaatatataaccCTTCCAAGCTCGCTGTTCGGAGTGAGCACAGACCAGTGACTTCATTTCCTGGTGAGCCGGGGGACTTGGAGATATTTTTATCCAAAAGGTGAATAATGCACcagaaaatgaatattatatagTTGAAaatcaggccatccgagatgtagacgAGTTTGTTTTACATCATCACAACAGATCTGGAGAAAACTTGCTCACCGATAAATGCATCTTAAcaatggatttgtttattacaagcCACTTTTTGCTTCACAAACATTGTTGGACATTGTGACGTTCGGACTCTcgttttgacggcacccattcaccacagaggatccattggtgagcaagtcaTTTGATGCTAAATTACTCAATACACATACATCTTGGTTTGCCcaagggtgagtacattttcagcacatttttatCTGTGAGGAGACAAAGTTAATCTTTTGTATTATCTCAGTCGAGTATACTTGAAAATGGATTGTATGCTGGCATTAAGTTTATTAAAAGTTCAGTcaagaaaaacagttttttttttaaatttagtttctttattgtaaaaatggtTTCCCAACTCtccttacatttttgtttgtagttGCTATAAAGTTGAAATACTGTTCTGTGTAATGACTGTTTGGCAAATATGACACGTCCAGTGTGACTGACAGCTTATAAACAACCTAAAACACTCTTAACGTCTGCATATGATAACATTTCATCTTTTGTCTAACGCATGTGATTGCACAACAAAAGCGTCACGAATCTTCAGCAAACATCCAGCACCGTATGTTCTCAGTCATTTTAACAAGAATGTGTCAGAATACTTCACATTGTATTGAATTCAAGAGTAAACTATTACTACATATTTTCCCATCAAGCATGTCCAgtattttcaaacaaaataaataagttcCTTTTCAAAAAGAATAGTGTGTTTATATCATTTCCCTTT

Function

NR:

description
PREDICTED: uncharacterized protein C12orf45 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237762.1 True 1583 mRNA 0.40 4 3906486 3908711

Neighbor

gene id symbol gene type direction distance location
scube1 scube1,LOC107726032,LOC107592233,LOC107580481 coding downstream 18332 3826024 ~ 3888154 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding downstream 81083 3793939 ~ 3825403 (-)
pnpla3 pnpla3,LOC107726050,LOC107743702,LOC107656255,LOC107592239,LOC107580453,LOC108428138,LOC107658728 coding downstream 146747 3752367 ~ 3759739 (-)
ttll12 ttll12,LOC107581273 coding downstream 155093 3725176 ~ 3751393 (-)
LOC122343407 NA coding downstream 185361 3712615 ~ 3721125 (-)
chst11 chst11,LOC107592229,LOC107580584,LOC107743617,LOC107656313 coding upstream 23117 3931828 ~ 3970462 (-)
hcfc2 hcfc2,LOC107658821,LOC107592226,LOC107743554,LOC107656316 coding upstream 67596 3976307 ~ 3981828 (-)
avpr1ab avpr1ab,LOC107725953,LOC107658830,LOC107592260,LOC107744016,LOC107581276 coding upstream 76736 3985447 ~ 3988665 (-)
kics2 si:ch211-125a15.1,LOC107592225,LOC107658829,LOC107726025,LOC107743608,LOC107580661,LOC107656252 coding upstream 132181 4040892 ~ 4046291 (-)
si:ch73-139j3.4 LOC107658832,LOC107725999,LOC107592219,LOC107580782 coding upstream 212731 4121442 ~ 4124829 (-)
LOC122342502 NA non-coding downstream 120766 3775440 ~ 3785720 (-)
G25739 NA non-coding downstream 136157 3770121 ~ 3770329 (-)
G25732 NA non-coding downstream 164681 3710024 ~ 3741805 (-)
G25731 NA non-coding downstream 198592 3707589 ~ 3707894 (-)
G25706 NA non-coding downstream 205180 3647063 ~ 3701306 (-)
G25853 LOC107725886,LOC107592223,LOC107658822 non-coding upstream 194019 4102730 ~ 4106259 (-)
G25871 NA non-coding upstream 267543 4176254 ~ 4176625 (-)
LOC122342390 NA non-coding upstream 278256 4186967 ~ 4188728 (-)
LOC122342421 NA non-coding upstream 284848 4193559 ~ 4195145 (-)
LOC122342441 NA non-coding upstream 288134 4196845 ~ 4198357 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 288119 3602356 ~ 3618367 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other downstream 304495 3601000 ~ 3601991 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other downstream 329363 3534662 ~ 3577123 (-)
LOC122342805 NA other downstream 884974 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 894272 2999882 ~ 3012214 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 225266 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 356215 4264926 ~ 4267495 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other upstream 822513 4731224 ~ 4757827 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other upstream 1176379 5085090 ~ 5094640 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 1810301 5719012 ~ 5720250 (-)

Expression


Co-expression Network