lsm8 (lsm8,LOC107592220,LOC107580766)


Basic Information

Item Value
gene id lsm8
gene name lsm8,LOC107592220,LOC107580766
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4125348 ~ 4126807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237763.1
CCGCGATAGGTCGTCGACTGCACGAGTCTCGGCGTTCTCATTTCCGGTTCAGATCGCAGCTGAACAGTGTGTTTCGTTGTAGTTGTGCTCGAGAACCGGTGGATTTAAACACGCTCCAGCAGAGATGTCTACCGCTCTTGAGAGCTACATTAACCGGACGGTTGCCATCATCACTTCAGATGGCAGAATGATTGTGGGGACGCTAAAGGGCTTCGATCAGACGATCAATCTGATCCTGGATGAAAGCCACGAGCGGGTGTTCAGTTCTTCTCAGGGCGTAGAGCAGGTGGTTCTGGGACTGTATATTGTCAGAGGCGataatgtgGCTGTAATCGGTGAAATCGATGAAGAAACGGATTCAGCGCTGGATCTCGGAAACATAAGAGCAGAACCGCTTAATTCTGTGGCGCACTAATGCCTCTCGAATCAGGACTGAAAAAATCCACGTTTAGATGAAATTCCCTGTCTCCCTTTTGAAGACTCACCCTAGGACATCTACAGGCATCAAAAAGCAGCaatattatttgcttttttaatattgaaagaAATAGACTGAATGCATATCCTTTTTTTTACgtgtgttgaaataaaaaagaattggAAAGAA

Function

symbol description
lsm8 Predicted to enable RNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U6 snRNP; and precatalytic spliceosome. Is expressed in muscle. Orthologous to human LSM8 (LSM8 homolog, U6 small nuclear RNA associated).

NR:

description
PREDICTED: LSM8 homolog, U6 small nuclear RNA associated

GO: NA

KEGG:

id description
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237763.1 True 607 mRNA 0.45 4 4125348 4126807

Neighbor

gene id symbol gene type direction distance location
kitlgb LOC107725965,LOC107580747,LOC107656304,LOC107658725 coding upstream 4041 4115466 ~ 4121307 (+)
lmf2b LOC107658822,LOC107592223,LOC107656307,LOC107580684,LOC107743574,LOC107725886 coding upstream 11627 4102778 ~ 4113721 (+)
ovch1 LOC107658825,LOC107592259,LOC107736419,LOC107743570 coding upstream 23168 4098063 ~ 4102180 (+)
tmtc1 tmtc1,LOC107725887,LOC107656308,LOC107592224,LOC107580673,LOC107658819,LOC102198433 coding upstream 28077 4063857 ~ 4097271 (+)
ipo8 ipo8,LOC107726055,LOC107580646 coding upstream 63301 4047051 ~ 4062047 (+)
hspa14 hspa14,LOC107658827,LOC107592213,LOC107580804,LOC107656298 coding downstream 37930 4164737 ~ 4170689 (+)
meig1 meig1,LOC107592215,LOC107725971,LOC107581293,LOC107658840,LOC107744135 coding downstream 48618 4175425 ~ 4176610 (+)
tmem243b tmem243b,tmem243,LOC107592214,LOC107744120,LOC107580823,LOC107656297 coding downstream 50191 4176998 ~ 4180317 (+)
tspan12 tspan12,LOC107592202,LOC107658802,LOC107656244,LOC107565667,LOC107744106 coding downstream 288338 4415145 ~ 4429395 (+)
adm2a LOC107592207,LOC107743397,LOC107726065,LOC107580886,LOC107656286 coding downstream 690241 4817048 ~ 4827652 (+)
LOC122343346 NA non-coding upstream 118200 3988683 ~ 4007148 (+)
LOC122343347 NA non-coding upstream 317450 3806939 ~ 3807898 (+)
G25537 NA non-coding upstream 416496 3708537 ~ 3708852 (+)
G25536 NA non-coding upstream 418284 3706859 ~ 3707064 (+)
G25535 NA non-coding upstream 422977 3701834 ~ 3702371 (+)
G25823 tymp,LOC107725998,LOC107580729,LOC107743597 non-coding downstream 2116 4128923 ~ 4129250 (+)
G25824 NA non-coding downstream 2532 4129339 ~ 4129628 (+)
G25825 NA non-coding downstream 3337 4130144 ~ 4130422 (+)
G25827 NA non-coding downstream 5301 4132108 ~ 4132552 (+)
LOC122342475 NA non-coding downstream 97776 4224583 ~ 4227231 (+)
G25551 NA other upstream 386754 3737502 ~ 3738594 (+)
G25514 NA other upstream 623254 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 818590 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 1007354 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 2129812 1994240 ~ 1995536 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 102822 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 106101 4232908 ~ 4235244 (+)
G25958 NA other downstream 423356 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 802664 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 1227525 5354332 ~ 5397886 (+)

Expression


Co-expression Network