rhoj (rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930)


Basic Information

Item Value
gene id rhoj
gene name rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16822113 ~ 16838424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237784.1
ACTCCTGCCTAATATGGAATTCGCAGGGAAGCCAATGATTTCCTGACACTGACGATGCGTAGCCGCGTAGGGGCGAATGTGGAAAGCTGCTAGGAGTATGAAGGAATTAAACCGGAGCCGCGGCCACTGTTTTACAAACGGTCTCGTCGTCGGATCAGGAAAATGTAGAACATCGGAATGCGAGTTGTAGGAGTTATCGTGAGTTTTCGTCAAACTGCTGTCGATGGCGAGGGATTGTTTTGGAAGCGCGAGCTGAAGCGTGGGTCACCTACTTGACGGATTTGCCCGCGCGCCGTGCCACACTACAACTCGAGCGTTTCAACGGGTCGCACGAAGCCTAACGTCTTAAAGGGCGATATTTGTGGTCGACAGAAGACTTGACCACCTGTGGAGGGATACGGTTTCTGGACTTGCCCAACTATCATGCCTGCCCTCGGCTCGAAAAGTAGGCAGAACGCAGTGGAAGCGGCTGAGGATGGAGGCGGTAACGGCGAACCTCTCGATACCGCGGCCAAAAAGATGTTGAAATGTGTTGTGGTCGGCGATGGAGCTGTGGGCAAAACCTGTTTGCTCATGAGTTACGCAAACGATGCTTTCCCCGAGGAATATGTGCCGACGGTGTTCGATCACTACGCAGtgaatgTAACGGTATCTGGGAGGCAGCACTTACTGGGATTGTACGATACTGCTGGACAAGAGGACTACAACCAGCTGCGGCCCCTCTCCTACCCCAACACAGACGTCTTTCTCATCTGCTTCTCTGTCGTGAATCCAGCTTCCTATCACAATGTGCAGGAGGAATGGGTACCTGAGCTCAAATCCTGCATGCCTCATGTGCCCTACATCCTCATCGGGACACAGATTGACTTGCGAGATGACCCAAAGACACTGGCACGTCTGCTTCAGATGAAGGAGAAGCCACTCACCTATGAGCAAGGCCTCAAACTAGCCAGAGAGATTGGAGCCCAGTGCTATCTGGAGTGTTCGGCGCTGACTCAGAAGGGACTAAAGACAGTATTTGATGAGGCCATCCTGACAATCTTCAGcccaaagaaacaaaaacggGGCTGCGCGGCCTGCAGGAGCTGTTGTGCTATCGTGTGAGGATAAAACATCTCCAACTGTGAACACCCACTCTTCTCCAAAGCTTTGGGCAGAGTAACAAACCCTAACCCGCCTCCAGTCTGCTGTACATCCTTCCTTTCTCCATCCGCCTGTTGTCCCGCAGGACAATGAGCGGTCTTGCCCTCGGTTTGTATGTCTTGTAGAGAGCTACACTGTCCAAAAAAGTGCCTTCATTTTCCCCCCACGTTGCCTTACAGGATTCGCTTCTCAAGCCAAAGAAGTCTCAGACGGGACTGCGGTTTCTTGAACCGACGTGGCGTGGCGTCGCCAATTCACCAATCGAATTTCAGATTCAGCTCTGAGccattggattttttttttttttaaaccggcTATATTATATGGTTTCTCGAggcttatgaaaaaaaatgaaaatccattCCTGCGTACAAGCTGGTTTTCTCTCAGTCACCTCAAATCAATATTGCGCTCTTTCTGGAGTCAATGCTTCAGCAGTTCGAGCTAGTTAATAAGGGAAATTCTCTGGAGGATGGCCAACTCATCAATAGAGGTAGAGcagatggaaagagagagagagagagacaaggaGGAATGTATCTTCCTTGGGTCATTCAAAATTTACAAAACTGATAAACCGCTaaattacagtacattaaaataatggtaTCCATCAAAAAGAGTGACAATCAAGCGCACTGTGTGGAGACTGAAGTCTGTCAGTGACAGGATAAAGGGAAATGCATCTCGTGACAACATTATCCCATGAATCATTTATATTtccttgtgtttttaaaaccatGAAGTGTACTTAGTCACGTTTCTGTGAGCCTTCAGACCTTTATCTCTATAAAGTGTAGGTGTAGAACAATGATGCCATAAAATGGTGCtgtaattgttatatttttcataCGCATTTACATTCTGATTTTTGAAGGGGTCTGTATTCTCAAATGACTCGGCctacacactttttaaaaaatgttctcatTTTCCTCTATTAAAAACCAGCCAATGGAGGACTAAAAGTATGGAGGACTCTTTGTGCCGCTTAAATTAAAAGGAAGAAATCGATCActaatgtattatttcaaaaatttaaatggctAGATAAATCATAGATGAATCATGTTTCAAGttatgacatattttaaaaagttttcgtaaatgtaaaaaataatatattaataaatcgcAATCTAAGCTAGAAGTTAATATTGGAAATACTTGGTAGCTGTCATGCAGTTAAATTCTACAGGATTTCCACATCATTAACTTGTCCATCTGGAAACAAAACCATTGTGGCCAACTGTGACATTTTCCCTGAAAGTTTGAGTTGGAACAGTTTCCGAAGGTGTGATTTTAAACACATCAAGGCTGTAAAAGCAAACTATTGAGTAGCGTGACATGTTTTCCTGTTTAGTGTGATGGTGCCTAATGTCCTTGAAAGCCTCTGTAGCCACTTGTTAGCAACCGCCATTCTaagtaaaagctttaaaaatgtcacgAAGGAGGGATTATTggtgtattttatgttttatagtaACACAGGAAAATATTTCAAGCTCGTGCAGACCTTATTTGagtgatttaaacaaaaaacatttggcTACAGAAATACATCCCCGCAGCACTGCATTAGTGTGATCATTTTAGTTTACTTTcacagtttaaatgtaaaggGTCTACTTTTTTCAAAGTGAAAggtattttttctttatcttgtcattttaactgatatattttattatcatttttattttatttttaagtggcACTCATAGTCCTCCACATGATCTgacgctgtaaaaaaaaaaaaaaatcaccctaTCTCTATTTCAGCAGAAGTACTCATGTATTTACAGTGGACCAGGCTTATACATTGTCTAACTTCTCAGTTTTGCCTCTGGCTGAAGCCACCCCCTCATTTTCCCTTTTAAAGATCAGCTCAAACACAAATGGCTTTGTTCTTCAGACTTGTTTTTTCTCCTCAGGCATGTAGCGTGGTCATGCTGTAAACTGCACAGCTGATAATGGACTCTCAGCAGTCCCACCCTAAATATGCGGCATCCTCAAAATCCCTACTGCGTTTTGGtacaaatagaaaacataaaaacattgtgtttaGCCCTTACCTTTTTGTTTTGGACATGTGTTGAACAACGTATAGGTTAACCAACAGTTCATGCGTCCACACTTGCTTACCAGAAGCTGTCCTgtgagtttttgttgttgtcagaCCACCATGTTATGGACACCAGAACTGGTAGCGATTACTTCTGATTGCTCTTCACTTCAGTCTTTCCTTAGCTTGACCTCAGGGACTTCTTTCCGGAGCCCGCAAGGCACTAGAGACCATATTCAGACTGAGGAATCAAGCCTGCTccacagagagaaagaatgagccGACATTCACTTGCCTTTAATGTAGCatagagtttgtttcttcactaGTTTAAGTGCACTTACGACACTGTGCCTTGCATTGTACTATGCAATAgtttatatactgtaatgtTAATGAGAAGACCAGTTTTCAGTCGATGGCTGAAAGAGCTATAACTTGAACTCAGTCTCGAACTCAACCGTAaacttatatttaatgtttttttttcctttaaatgtcaTGATTTATATGCTTAAGAATCATGGCCGCTCTCTTTGCCAAAACTAAAACGTGTTGTAAATAAACGTTACACAGAGTGAATAAAGCTTGTGACGAACTgtctttgaaatatta

Function

symbol description
rhoj Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOJ (ras homolog family member J).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoJ-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07864 RHOJ, TCL; Ras homolog gene family, member J

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237784.1 True 3823 mRNA 0.42 5 16822113 16838424

Neighbor

gene id symbol gene type direction distance location
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding upstream 111957 16701043 ~ 16710156 (+)
LOC122342226 NA coding upstream 204895 16615345 ~ 16617218 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding upstream 364816 16436391 ~ 16457297 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding upstream 394927 16398632 ~ 16427186 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding upstream 423614 16378633 ~ 16398499 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding downstream 86593 16925017 ~ 16932206 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding downstream 99375 16937799 ~ 16939687 (+)
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding downstream 161481 16999905 ~ 17026338 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding downstream 195497 17033921 ~ 17037157 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding downstream 202433 17040857 ~ 17083120 (+)
G29026 NA non-coding upstream 69524 16748718 ~ 16752589 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding upstream 121895 16698521 ~ 16700218 (+)
G29011 NA non-coding upstream 212109 16609724 ~ 16610004 (+)
G28991 NA non-coding upstream 281953 16519411 ~ 16540160 (+)
G28985 NA non-coding upstream 346780 16474743 ~ 16475333 (+)
LOC122342883 NA non-coding downstream 59091 16897515 ~ 16911342 (+)
G29078 NA non-coding downstream 102592 16941016 ~ 16941310 (+)
G29086 NA non-coding downstream 198849 17037273 ~ 17038220 (+)
G29089 NA non-coding downstream 208447 17046871 ~ 17085857 (+)
LOC122342667 NA non-coding downstream 252115 17090539 ~ 17119106 (+)
G28982 NA other upstream 347732 16473898 ~ 16474381 (+)
G28899 NA other upstream 836387 15985219 ~ 15985726 (+)
G28891 NA other upstream 980258 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1166835 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 1266431 15439334 ~ 15555682 (+)
atp5mj NA other downstream 199995 17038419 ~ 17040830 (+)
G29526 NA other downstream 1461991 18300415 ~ 18301189 (+)
G29545 NA other downstream 1598036 18436460 ~ 18461317 (+)
G29642 NA other downstream 2044755 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2451796 19290220 ~ 19342911 (+)

Expression


Co-expression Network