rtn1b (rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846)


Basic Information

Item Value
gene id rtn1b
gene name rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16999905 ~ 17026338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237785.1
GCTACTTAAGACTGGTGAAATTAATTTGAGTTTAATGTGAATCCAACCCCCCCGGTGGGTTTATGCTTTGAAGCGGCTGTAGCAGTCTTCGTGTGCTACCCGAAAGCCTGATTTGACTCCGGGGTTCAGCTCTGTGTGTTTAAACGCCGCGTGCCACATGAGCTCGAGACACGGTGACGTCAGCGCCGAAACGCCGAACTAAACGAGCCGTTTCCAGCAGCGCGAGCGTCCGCCGGAGCGCCGGGCCTGCCCAGAACACTCCTGACAGCCACCCAGCGTCTGTTCCGAGAAGTTGAACGCCTGCTTTTCTTCTCCCGGTGTCAGTGACCGCTTCTCTCCGAAGAGCATCGCACTCGGGCTCAGACATGTCCGTGAAGCCGGAGGCAGACTCGGAGGGCGGCCGGTACGGGGACGATTTTGAGGAGATTGACCGCTTCGGGAGCTCCTCCGCCGCCAGGCGGGTTGACTTGGGAGAGGAGCGGCAGATGagagactgggaggacgaatcAAGTGAAGGGAAACAGTTTTCCAGCCATCCCGAAAGCGACCGGCAACCGCTCCCTGTTGTCATGGAAACGGTTTCCTCAGATAAATCGGATTTAATTTTCCAGAAGAAGTCAACTGATGACAGGGATGACCTGTACACCTCCCTCTTGTCCACTCAAAGCTATGCCTCGAATGAAGACACCTCCTACTTTTCTGGCAGCATGAGCAGATCTGCTGACAAAAACACATCCAGCGCAGAAGGCTTCACCTCTGGATGCCATTTCCAGTTGACCACGGACTCTGGCATCAAGAACCCCAGTGCAGACCAGACTGACAGCTTTCAGAAGATACATCACTCTGAGAAAGCTTTTGACTCTTCTTACAACTACATGGACATCAGCCGTAAAGAGGACTCCTGTAGTTCACAGCGCCCCCTTGAGGACTGGAGGACGAGCGGCCTCTCAGAGCCCACCCAGTACGCTAAACTAGAGAAGAGTCCCTCACCGGTAGAAGTGGATGTGGAAGACATTGGCTCTGCTGCAATTCTGGACTCTCAGACATTCCCATATGTGGAGGAACCATCTGATGAAGAGCTGTCTGACTACCAGCCCTATCGGTCTCCAGGTACCGGCAGCAGTGCCAGCCCAGTAAAAATCACCCTGACAGAAATACCATCTACATCTGTATCACCCACCACAGTCCAGCACAGCCCCACAATTACAGTGTCAGAGAAGGAGAGCATTCTGAGTCTGGGGTTGGAGGGAGTGCCGACCGTCACTCTCTCAGAGCCTGAGGATGAAAGCCCTGAGTCATCTACACCCCCTACAGAAGAGTCTGATTCTCCTTTggatccaaacatccaggctgatgaaactaaaataatgagTTTCACCCAAGACAAGACTCAAACAGCTCCCATCTCACCCTCTCCACCAACTTCCAAGCAGGCGAGTTCTCCAATAGAGAAGAAGTCTTCCCCCTCAAAACCCACCTTGCCACCTTTCCCCCAGGATGTCGAGGGTAGCAGTGCCGAATCTGGCGACTCTGAGATTGAGCTGGTGTCTGAAGAGCCTAGTCCACGAGCTCCCAACACTGGGTACATGAGCTTCAGTAAAAGTCCCAGCACCACTTCATCAACCACAGTACCTTCCACAGTGCCCGCCCCGTCTTCTACCCTTGCATTTTCCCAGAGTCCTGCAATGCAGTACAGTATATTGAGGGAGGAACGTGAAGCAGAGCTAGACAGTGAACTGGCTCTGGAGTCCTGCGGAGAGGAAAGCCCCAAAAGATTGTCCCATGACTCCACAAAGGGTTTCAAGGAGAGCTCACAGCCAGTCAAAAAACCAACAACTCCGGCTTTGGCAAGTAAAGAACCAATCATGACTCCCACTGCACCTCCTCTGACTGTTCCGGCCCCAACCAGTGCTCCTAAAGAGAAGACAACCACCATGGAAGAGAAGCCCAAGCCCAGCAGCACAACCCCCAGTCCAGGCCTGCCAGAGCTGAAGGTGGAGCATCCTGCTGGGGAGGTGCACCAGAGAGAAAGAAGACGGTCCAGTCAAGCTCGCAGGGGCTCTGTGAGAACGACTGCACCACCCGTTGTCTTCCAGGGTCTAACAAGGGAGAAAGTGATGGAGTTGCTGTACTGGAGGAACCTGAAGCAGAGTGGGCTGGTGTTTGGCAGCTTCCTGCTGCTGCTCTTCTCTCTGACGCAGTTCAGTGTGGTCAGCGTGGTGGCCTACCTGGCCCTGGCCGCCCTCTCCGCCACCATCAGCTTCAGAGTCTACAAGTCTGTGCTGCAGGCTGTGCAGAAAACAGACGAGGGACATCCCTTCAAAGCTTATCTGGAGGTGGAGATGTCGCTGTCCCATGATCAGATGCAGAAGTACGCAGAAAACGCTCAGTATTATATCAACAGCACACTGAAAGAACTGCGCAGACTGTTTCTGGTGCAGGATCTGGTGGACTCACTAAAGTTTGCAGTGCTGATGTGGTTGCTGACCTATGTGGGAGCCCTCTTTAATGGGCTCACTCTTCTTATTATGGTGGTGGTGTCCATGTTCTCGATGCCTGTGGTCTATGAGAAATACCAGGCACAGATTGATCAGTATCTGGACCTAATAAGAACCCAAGTCAACTCTGTGGTAGGAAAGATCCAGGAGAAGATTCCTGGGGCCAAACGAAAGGCTGAATAGGCTCCACAGGGCCCCCTGGAGGAGGTTGTGAGCCCCTGAATGCCCCATTATTGGGAAAGCTGAATGATGATCAAGGGTTCCTcatcgtacacacacacacacacacaaatcagacACAAAAAACATCACTAGAACATAGTTCTACTTTGTACACATTGTGACGTCTAGAGCAACGGCTGAGCTGTGCAGGAGAAGTCCCATCCTCGCCTTGTAActatagaaaaagaaaaaaaaaaaaagcaaagcgtGCTGTCTCTCAAATCAGGATCTAGTCAGAAGTACAACTACTCAACGAATTGTAGAAGTAACCTTGATACGTATAATTCAAATCTGGCAAAAAGActagatgtgattttttttttttgtatgtgttgcTCATAAAGTGCATGAAGTCAAGAGTCTTAAGTGCTGATGAATTCTCTTTTGATCTTTTAAGTTTGTGTGCTTTCTCAGCTGTGCTGAAAATCTCTGTAGTATGTGAAAGATCTCTCCAGCTTTATTGCTCTCCAGTGACACTCtcttcttggaaaaaaaaaagcttttttgtgtCTTGGGCGTTGGGTGGGGCTTTTCCTCTTCCATCACTATATCTGTGAACATAATGAACATAAACATCATTGTCAGCTAGACGCATGGATCTGCTGAGGTTCATGATATCTGGGCACAAACGCAACTATTTAGCAATGTTCTGATTAGATATGGTCGGCTCACTCGTAGCATCACGGTATGTTTCTTTTCCGTAGGACTCCGCTACAGAGATTCATGTTTTTAGGTGCTGTCAttgatcttttttaaaatgatacaaaacaaaagagagggaggagaaggaAGCTTCAGTGAGTGATTGCCAGCTAGAATCTGTCAATATTTGTACTATGTTAAGTGTTGTTCATTCTTTTAGCCATTGACTCTTAACTATTTGCACTTAAGATGTACTCAATACTGAATGcgaaaataaatgttcttaaatGTA
>XM_043237786.1
CTGGTGTGAACCggtgagcgagagagaaagagagagagggaaaacgACAGATACGGCGCAAGCAGCGGAGAGGCTGTAGCAGAAGCGTTAGCAGAAAGCGATTCTCAGTCCTTCCCCTCACCCAGCCTAGTATGCAGGCCAGCACCATGGCAGCCGCAGACTCGACCAAGATGGAAGGTTTCTGGAGCAACTGGAAGTGCCAGGTGATGGAGTTGCTGTACTGGAGGAACCTGAAGCAGAGTGGGCTGGTGTTTGGCAGCTTCCTGCTGCTGCTCTTCTCTCTGACGCAGTTCAGTGTGGTCAGCGTGGTGGCCTACCTGGCCCTGGCCGCCCTCTCCGCCACCATCAGCTTCAGAGTCTACAAGTCTGTGCTGCAGGCTGTGCAGAAAACAGACGAGGGACATCCCTTCAAAGCTTATCTGGAGGTGGAGATGTCGCTGTCCCATGATCAGATGCAGAAGTACGCAGAAAACGCTCAGTATTATATCAACAGCACACTGAAAGAACTGCGCAGACTGTTTCTGGTGCAGGATCTGGTGGACTCACTAAAGTTTGCAGTGCTGATGTGGTTGCTGACCTATGTGGGAGCCCTCTTTAATGGGCTCACTCTTCTTATTATGGTGGTGGTGTCCATGTTCTCGATGCCTGTGGTCTATGAGAAATACCAGGCACAGATTGATCAGTATCTGGACCTAATAAGAACCCAAGTCAACTCTGTGGTAGGAAAGATCCAGGAGAAGATTCCTGGGGCCAAACGAAAGGCTGAATAGGCTCCACAGGGCCCCCTGGAGGAGGTTGTGAGCCCCTGAATGCCCCATTATTGGGAAAGCTGAATGATGATCAAGGGTTCCTcatcgtacacacacacacacacacaaatcagacACAAAAAACATCACTAGAACATAGTTCTACTTTGTACACATTGTGACGTCTAGAGCAACGGCTGAGCTGTGCAGGAGAAGTCCCATCCTCGCCTTGTAActatagaaaaagaaaaaaaaaaaaagcaaagcgtGCTGTCTCTCAAATCAGGATCTAGTCAGAAGTACAACTACTCAACGAATTGTAGAAGTAACCTTGATACGTATAATTCAAATCTGGCAAAAAGActagatgtgattttttttttttgtatgtgttgcTCATAAAGTGCATGAAGTCAAGAGTCTTAAGTGCTGATGAATTCTCTTTTGATCTTTTAAGTTTGTGTGCTTTCTCAGCTGTGCTGAAAATCTCTGTAGTATGTGAAAGATCTCTCCAGCTTTATTGCTCTCCAGTGACACTCtcttcttggaaaaaaaaaagcttttttgtgtCTTGGGCGTTGGGTGGGGCTTTTCCTCTTCCATCACTATATCTGTGAACATAATGAACATAAACATCATTGTCAGCTAGACGCATGGATCTGCTGAGGTTCATGATATCTGGGCACAAACGCAACTATTTAGCAATGTTCTGATTAGATATGGTCGGCTCACTCGTAGCATCACGGTATGTTTCTTTTCCGTAGGACTCCGCTACAGAGATTCATGTTTTTAGGTGCTGTCAttgatcttttttaaaatgatacaaaacaaaagagagggaggagaaggaAGCTTCAGTGAGTGATTGCCAGCTAGAATCTGTCAATATTTGTACTATGTTAAGTGTTGTTCATTCTTTTAGCCATTGACTCTTAACTATTTGCACTTAAGATGTACTCAATACTGAATGcgaaaataaatgttcttaaatGTA

Function

symbol description
rtn1b Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; gill; heart; and muscle. Orthologous to human RTN1 (reticulon 1).

NR:

description
PREDICTED: reticulon-1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20721 RTN1; reticulon-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237785.1 True 3654 mRNA 0.49 9 16999905 17026338
XM_043237786.1 False 1743 mRNA 0.45 7 17016609 17026338

Neighbor

gene id symbol gene type direction distance location
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding upstream 60218 16937799 ~ 16939687 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding upstream 67699 16925017 ~ 16932206 (+)
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding upstream 161481 16822113 ~ 16838424 (+)
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding upstream 289749 16701043 ~ 16710156 (+)
LOC122342226 NA coding upstream 382687 16615345 ~ 16617218 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding downstream 7583 17033921 ~ 17037157 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding downstream 14519 17040857 ~ 17083120 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding downstream 96095 17122433 ~ 17176497 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding downstream 240119 17266457 ~ 17293636 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding downstream 281955 17308293 ~ 17348870 (+)
G29078 NA non-coding upstream 58595 16941016 ~ 16941310 (+)
LOC122342883 NA non-coding upstream 88563 16897515 ~ 16911342 (+)
G29026 NA non-coding upstream 247316 16748718 ~ 16752589 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding upstream 299687 16698521 ~ 16700218 (+)
G29011 NA non-coding upstream 389901 16609724 ~ 16610004 (+)
G29086 NA non-coding downstream 10935 17037273 ~ 17038220 (+)
G29089 NA non-coding downstream 20533 17046871 ~ 17085857 (+)
LOC122342667 NA non-coding downstream 64201 17090539 ~ 17119106 (+)
G29178 NA non-coding downstream 192804 17219142 ~ 17219514 (+)
G29181 NA non-coding downstream 193919 17220257 ~ 17220616 (+)
G28982 NA other upstream 525524 16473898 ~ 16474381 (+)
G28899 NA other upstream 1014179 15985219 ~ 15985726 (+)
G28891 NA other upstream 1158050 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1344627 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 1444223 15439334 ~ 15555682 (+)
atp5mj NA other downstream 12081 17038419 ~ 17040830 (+)
G29526 NA other downstream 1274077 18300415 ~ 18301189 (+)
G29545 NA other downstream 1410122 18436460 ~ 18461317 (+)
G29642 NA other downstream 1856841 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2263882 19290220 ~ 19342911 (+)

Expression


Co-expression Network