LOC122343370 (wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035)


Basic Information

Item Value
gene id LOC122343370
gene name wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3660617 ~ 3675293 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237790.1
GGGAGAGACTATACGCTGAGTAAAGGAAGTGGAAGGCGAGAGGTGGAGGGCAGAAAGGAGACAGAAAGATTGTGGAGCGGGCTAAAggagaaagaagaggaaaaatgaTGGAATTTCAAGAGCGCACAGTGGGAACGTCAGGAAAGTGTCTCGGAGTGAAAGCGAGCAACATGGGGTGGGAGTGACGGAGTTGACAGTAAAAGAGAGCATGAGCGAGGAGGCTCTTCGCGTTTCCATTTCTTGGACGAGGAAGGATGGATGTGAGAATGAACCAAGGACACCTACTTTTGGCAGTGACTCTCATCGTCTGCAACTCACAGCTGCTGGTGGTCGCCAACTCATGGTGGTCATTAGCTATGAACCCCATCCAAAGACCGGAGATGTACATCATTGGAGCACAGCCTCTGTGCAGCCAGCTGATGGGCCTGTCTCAGGGTCAGAGGAAGCTCTGCCAGCTCTATCAGGACCATATGGTTTATATCGGAGAGGGGGCAAAGACGGGCATCAAGGAGTGTCAGTATCAGTTCAGGCAAAGGAGATGGAACTGTAGCACGGTGGACAACACATCCGTGTTCGGCCCCGTCATGCAGATAGGCAGCAGAGAAACAGCTTTTACTTACGCCATCAGCGCAGCGGGCGTCGTGAATGCGGTGAGTCGGGCGTGCCGTGAGGGCGAGCTCTCCACCTGCGGCTGCAGTCGAGCGGCTCGCCCCAGGGACCTCCCGAGAGACTGGCTGTGGGGCGGCTGCGGGGACAACGTCAACTACGGCTACCGCTTCGCCCGGGAGTTCGTGGATGCCCGCGAGCGCGAGAAAAACTACCCGCCGTGGGTCTGTCGTAAAACGCGCACGCGACTTATGAACCTACAGAACAACGAGGCCGGGAGAATGGCAGTGTACAATCTGGCCAACGTCGCGTGCAAGTGTCACGGGGTCTCCGGCTCGTGCAGCCTGAAAACCTGCTGGCTTCAGCTGGCCGACTTCCGGCGTGTGGGAGAGTTCCTGAAGGAGAAGTACGACAGCGCCGCCGCCATGCGCATCAACCGACGAGGCAAGCTGGAGCAGGTCAACCACCGCTTCAACCCCCCGACCAGCGAGGACCTGGTCTACATCGACCCCAGCCCGGACTACTGCCTGCGTAACGAGACCACGGGCTCTCTGGGCACCCAGGGCCGCCTTTGCAACAAGACCTCGGAGGGCATGGACGGCTGCGAGCTCATGTGCTGCGGTCGCGGTTACGACCAGTTCAAGACCTACAAACACGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGCTGCACGTCGCTCGTAGACCAGTTCGTGTGCAAGTAGCAGCCTAGGGACAGGAACAGACGCCCTGGAGAGGCACTGAGCAATTAGCGGGAGAGGAACGGGACCCTTAACGGACCCAGAGGGGGGGGGGACTTAGagataattaaatgtaaaatgatatattaaatagcaacaaattaaagtatataaataagtgTACGTGTGCCGTTGATAGTAATTTAATGACCTTTTCTGACT

Function

symbol description
wnt5b Enables signaling receptor binding activity. Involved in muscle cell differentiation; positive regulation of convergent extension involved in gastrulation; and positive regulation of non-canonical Wnt signaling pathway. Acts upstream of or within with a positive effect on midbrain-hindbrain boundary morphogenesis. Acts upstream of or within several processes, including animal organ development; convergent extension; and vasculature development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; cranial cartilage; fin; germ ring; and mesoderm. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 1. Orthologous to several human genes including WNT5B (Wnt family member 5B).

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X1

GO:

id name namespace
GO:0009826 unidimensional cell growth biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0051209 release of sequestered calcium ion into cytosol biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0048884 neuromast development biological_process
GO:0031101 fin regeneration biological_process
GO:0008591 regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0061053 somite development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0005615 extracellular space cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00444 WNT5; wingless-type MMTV integration site family, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237790.1 True 1547 mRNA 0.56 6 3660617 3675293

Neighbor

gene id symbol gene type direction distance location
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding upstream 59611 3579628 ~ 3601006 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding upstream 279445 3311653 ~ 3381172 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 648513 3006873 ~ 3012104 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 666118 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 719020 2938072 ~ 2941597 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 2952 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 85291 3760584 ~ 3769843 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding downstream 214144 3889437 ~ 3895875 (+)
aldh1l2 aldh1l2,LOC107580561,LOC107592231,LOC107743541,LOC107658818,LOC107656317 coding downstream 221784 3897077 ~ 3905931 (+)
slc41a2b slc41a2b,slc41a2,LOC107658826,LOC107726006,LOC107743571,LOC107580572,LOC107656312 coding downstream 233850 3909143 ~ 3959260 (+)
G25523 foxp2,LOC107725896 non-coding upstream 113108 3546122 ~ 3547509 (+)
LOC122343352 NA non-coding upstream 189482 3470366 ~ 3471135 (+)
LOC122343393 si:dkey-234i14.9,igl4v8,LOC107687028 non-coding upstream 213043 3447058 ~ 3447574 (+)
LOC122342809 NA non-coding upstream 219117 3440912 ~ 3441500 (+)
LOC122342808 NA non-coding upstream 220963 3439131 ~ 3439654 (+)
G25534 NA non-coding downstream 26135 3701428 ~ 3701754 (+)
G25535 NA non-coding downstream 26541 3701834 ~ 3702371 (+)
G25536 NA non-coding downstream 31566 3706859 ~ 3707064 (+)
G25537 NA non-coding downstream 33244 3708537 ~ 3708852 (+)
LOC122343347 NA non-coding downstream 131646 3806939 ~ 3807898 (+)
G25514 NA other upstream 158523 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 353859 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 542623 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1665081 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1872521 1784237 ~ 1788096 (+)
G25551 NA other downstream 62209 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 554336 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 557615 4232908 ~ 4235244 (+)
G25958 NA other downstream 874870 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 1254178 4929471 ~ 4944880 (+)

Expression


Co-expression Network