dnai7 (casc1,LOC107725557,LOC107659833,LOC107744936)


Basic Information

Item Value
gene id dnai7
gene name casc1,LOC107725557,LOC107659833,LOC107744936
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8774288 ~ 8780078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237818.1
CCAGGAGATGGCAAcgttgaatatttatgcaagaTTATTTCTCACAAAATCAGCAAAACTCCTCCGGACTGTTTTTCAAGCCGCTGAGTGCACTTTTAATggttgtttgttatttatttaccacATTTTCTTTTGAGGACGCTGATTGTTTTCTGTCTCGCGTGCGTCGTCGCCATAGTGACAGGAGGACGCGCGCCTGCCTGAGAGCTCTGGAACATGCCACCAAAGGATGGAAAGTCTGCAAAAAACAAAGGGGGAAATATCAGCAAGGCTGAGAGGGCGAGACTGCAAAGAGAGGCAGATGAGCAAAGACGGAGAGAGGAGGAAGAAGCTCGTGTCATTGCTGAGCGTGAGGAAAGTGAACGGCTGGAGAGGGAGAGAATAGAACAAGAGAAACAAGAGGAGCTTGAGTTAAAGGACAGAGAGCGCAGAGAGGATGAGCTGAATGAACTGCGGCACGTTCTAGATGAAAATCACACAGCAGTTACTGCGTGGGAATGGGAATGCAGGGACAAAGCTAAGTGGGAGCGCTACATGCGCTGCGACGGCAGCCCAGATCCGTCGGTGCAGCCAGAAATCAACTCCTTCATCAGCTTGTGGAGAGAAGACTCAGAAACCCAAATCCAGCAGGTCTTGGAGAACTGTGCTCTGGCTCTTCAGTTGACAAGCGAGCTGGACTTTCTCTTGAGCGAGGGTCCTGACACCAGCGTCGCTCAGCAGTATCGAGAAACGCTCGTGTGCCTGCAGAGTCTCATCCACTGCAAACTCAACCAGGCCACTGAGGAGCTTTTGAAGTCTGCAAGTTCTCACTCTGACATTGAGACCGGCAACATGCAGACTGTAGTGCAGGATGAAAACGTCACTCTCTGTCTGTGGGCCAACCTCAACAAAAACCCAAGGTTTAAAGGCTTCCAGTTTGAGGAGGTGGGTCTGGGCTTCGAGTTGCCGGAGCCACTTGCTGTGATTGACGTCGCTGTTCGGATCCTCCGTACAAGATACGATCACCTGTCCCATCACAGCGAGCGGGAACAGCTCCACAGAAGGAGATCCATGATCGAAGCCATTCTCACTCCACCGACCGAGAGCATCGCAGCGGTGCAGGATGAGAAGACGGAGGGAGAGGGGGACGAGCCGGTGGAGGAAGACAGTCGCTCGGTCAGATCAGACAGCAGAAAAAGAAGCGCTGTGAGTGTGATCTCAGCTAAGGAGGGGAGAAAGAGCTCTTCAATCAAACCGTTAGACCAAGGAGAAAGTCAGATGGAGGAAttcaaaacagcattagaagctGATCAAAATGATTCCGACTCATCCCCAGCCGAGCCCGTGATTGACAGCGCTGATGTACATATAGTGGACCTGCAACAGTTCACACCTTTGGGCGGAGTCTTCTACTTTGACGCCTTCCATCTACCGCCCCAGTCTCGCACAGTGAAGGGCTGGGAAATGAGAGAGCTGTTAGAAACCGGTCTCCAGGTCTTCCCCTATCCCACAGAGCCGTCTCGTGCTCAGAGCTCTACCTCAGTGAGGCTTGATCAACACAGCAGCGCTGTTGCCTCATTGCCTGTAGGGGTCTCTGTAGCTCTGCCCGACTCAGTATTGTTTCTGGAGGATCCACATGTGGCGTGTTGGGATCCTATCGGTCAGCACTGGCGGGCAGACTGCATTTCTGAGGCATCCTATGACGCAGAGACTCGCAGCATCTCCTTTAAGATGAACACATTCCATGCTTTCACATTACTGCAGGAGTCTTATATTAACATGCCTTTCCAGTCATGGGAGCTGAGGCCTCTGGGCCAAAACTCAGCTTTGTTCACAATCACTGGAGCTCTTATTGAAGTCGGCATCACTGTCAAGGATAAGCAATGTATGCTGCACATGGAGCAAACAAAGAACCTAGATCATCTTCTAGGGAAGTGGATGAGCCCCTCGGATCTCCAGAAGGCCATGCAAAGAGCTGGAATCAATATATTTGTGAATGAGTATTCAGACAAGTACGTCAGCATCAACCCAAAGGACCCATTAATAGAGCACACAGTGTATGAACAAATGGCTTTAATGTCCTCAGCTGTGGCTTTTTCCTGGAGCCGCTGGAACACACAATGCGGACAGGAGCACCTTGTTCTTCAGGCCTGTGAACAGTTGGAGGCTGGGCCTGTGGCTGAGGAGGCTTGGTCTCTTTACCTACTGGGTGCTCAGAGGAACCAGCATCTAAAGATGAAGGAGCAAGACGACAGCTTCTCTCCTGGGCTGGCCGAGGGCAGCGAGTTCCACTCCACCTTTCTGCACATGCTCAGACAGGACATGAGCACAGAGGGCCAAGCCAGAGTCCGTCAGTCTCACTACCTCTACACCGACACTGTGCAGAGGCTCCTGTGTGCAACACGCGTCCTCACCTACtcctgagaaaagaaagattaaGCATCCACGAATACTACATGCGTACACACTAAATATATGTCTGTAAGTGTATGTCTAAAACATTTGATAACGTGAAAATTGCTACATATGATGACATGCTGAGATGTaataacatcttgtgaagttcTTTATAAGCAGGTAGACTTACTCTTGAATGATTATTTATAGcatcatgaaataaatatatacacaatagaTACCACCACAAAAGAGCTTGTGCACTAAATCTTTCATGGAGAAATTGTTTCTAAATgctacaaaacacatttaatactaaaaaaaattatcaaaaaatgaataaaagatttcattataaa

Function

symbol description
casc1 Enables beta-tubulin binding activity and microtubule binding activity. Predicted to act upstream of or within microtubule sliding. Located in cilium; cytoplasm; and microtubule cytoskeleton. Part of axonemal dynein complex. Orthologous to human DNAI7 (dynein axonemal intermediate chain 7).

NR:

description
PREDICTED: protein CASC1-like

GO: NA

KEGG:

id description
K17580 CASC1; cancer susceptibility candidate protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237818.1 True 2735 mRNA 0.49 16 8774288 8780078

Neighbor

gene id symbol gene type direction distance location
kiss2 NA coding upstream 270241 8502866 ~ 8504047 (+)
golt1ba golt1ba,golt1b,LOC107725527,LOC107591215,LOC107586262,LOC107659829,LOC108437943 coding upstream 286657 8483973 ~ 8487631 (+)
tcp11l2 tcp11l2,LOC107586172,LOC107589958,LOC107694691,LOC107659845,LOC107744901,LOC107725683 coding upstream 291635 8475706 ~ 8482653 (+)
pkp2 LOC107725677,LOC107659846,LOC107586091,LOC107694692,LOC107589947 coding upstream 299583 8460448 ~ 8474705 (+)
si:dkeyp-38g8.5 si:dkeyp-38g8.5,LOC107595941,LOC107659854,LOC107744947,LOC107690729,LOC107725679 coding upstream 519443 8252084 ~ 8254845 (+)
bcat1 bcat1,LOC107590116,LOC107725514,LOC107664876,LOC107744911,LOC107587341 coding downstream 24114 8804192 ~ 8815015 (+)
igf1 igf1,LOC107659835,LOC107725558,LOC107664880 coding downstream 41652 8821730 ~ 8832632 (+)
pmch pmch,LOC107659836,LOC107591230 coding downstream 61666 8841744 ~ 8843250 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding downstream 75326 8855404 ~ 8865918 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding downstream 173869 8953947 ~ 8961233 (+)
G27162 NA non-coding upstream 21439 8752438 ~ 8752849 (+)
G27121 NA non-coding upstream 269192 8471675 ~ 8505096 (+)
LOC122343529 NA non-coding upstream 396979 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 442986 8278559 ~ 8331302 (+)
G27073 NA non-coding upstream 475289 8225458 ~ 8298999 (+)
G27301 NA non-coding downstream 172844 8952922 ~ 8953122 (+)
G27345 NA non-coding downstream 273943 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 277790 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 288853 9068931 ~ 9076136 (+)
LOC122342713 NA non-coding downstream 297940 9078018 ~ 9081866 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 226286 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 282350 8487911 ~ 8491938 (+)
stmp1 NA other upstream 290457 8482890 ~ 8483831 (+)
G27079 NA other upstream 525065 8247912 ~ 8249223 (+)
G26993 NA other upstream 635849 8137738 ~ 8138439 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other downstream 94639 8874717 ~ 8890176 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other downstream 235763 9015841 ~ 9018333 (+)
apaf1 apaf1,LOC107744928 other downstream 258560 9038638 ~ 9221046 (+)
G27360 anks1b other downstream 383069 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 601464 9381542 ~ 9395757 (+)

Expression


Co-expression Network