creb3l2 (creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932)



Basic Information


Item Value
gene id creb3l2
gene name creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1369392 ~ 1385823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043237823.1
TAACATTTGCTTGGAAACACCCGACCTGTTTCCTAAAAGTATCACAGTCCACAAACAGTCCTTTGTAAACAGATTTTGCAACTCCCATAATGTCCCCGCCCCGAATTCCTGTTCGCCTGTGAAGGGGCGACATTTCTCAAGGAAGCTGAGAGGAAAGTTCCGACAACACTGGCGACAGACCCGCAACTTATACCCAACTTTGCGCTGACAACGCAAGATTCTCTCCGAATCGCGACCTGACGGGTGTTTTTACGGATAGGCTGACAAATATTCGTTTGTGGAGTCGTTGAAGCGAAGCCGCGCGCGACGGTTTACTACAGACGCAGATCGAGGCATGGAAATAATGGATAGCGGGGAACCGTTTTTACAATGGGACAAAAATCTCAGCGAATTGTCCGAACCCGGAGATAACGACATTTTATACAGCACTCACTTCACAGAGTTGCTGGATGATCTGTCCCAAGAGGCTTTGCTGGGTCAGTTGTTAAGCGACCCGTTCCTGTCGGGCCGTGGAGATGCTATGGACACAGAGGAGGATCTGACCCCTGCGTCTCCGGTGCCGCCGCACATTCAAGCTGAGCACAGTTACTCTCTGTGCGGAGACTCACGGCCGCAGTCACCCCTGTCTCATCTGCCCGGGGAGCCCGGCAGCGACGCCGGTGACTCGGACAATGAGGAGTGGCCCATGGAGCAGGAGGACAAAGGGCTGAAGATGGAGCCTCTGCTGTGTGACCCGTCGCCCGTCCTGCTGCCCACCCTGACCCTCATTCTGACCCCCGAAGGTCCTGCGTCTGAGCCCGTGACTGACTCCTCGCTGAGCCCCCAGGCCGCTCAGGTGGAGGAGGACAGAGAGAACCTCAGCCCTCAGATTAAACTGGAGCCGCACGAGGTGGATCAGTTCTTAAACCTCTCACCCAAAGGCCTGGAGTCTCTGCAGATGCCGCCCACTCCTCCCAGCTCTCACGGCAGTGACTCGGAGGGCAGTCAGAGTCCCGTTCACCCCTGCGCTCCCTCCAGCCCCACACAGACCCCCGCGGCCCTCAAGGTGGCGCCGAGAGCCTCGTCTTCCCTCTCCAGCTCTCCTCTTCTGACCGCTCCTCATAAGCTGCAGGGCTCTGGTCCTCTGCTGCTGACGGAGGAGGAGAAGCGCACGCTCATCGCTGAGGGATATCCCGTGCCCACCAAACTGCCTCTGTCCAAAGCCGAGGAGAAAGCACTGAAGAAGATCCGCAGAAAGATCAAGAACAAGATTTCAGCACAGGAGAGCCgcaggaaaaagaaagagtacATGGATGCTTTGGAGAAGAAGGTGGAGACCTGCTCCAACGAGAACAGTGAGTTACGCAGGAAAGTTGAAACACTGGAGTGCACCAACAAGTCTTTGCTGCAGCAGCTGCACTCGCTCCAGGCGGCGGTGGCAGGAAAGGTCCCCCGGTCCTGCAGAGTGACGGGCACCCAGACCTCCACGTGCCTCATGGTGGTGGTCCTGTGTTTCTCCGTGTTCTTGGGGAGTTTCTACCAAGGCCTGAGTCCCTGCTCCTCCATCACCAAAACAGACCTGAGCAGAGAGATCTCCATACAGGACTCGTACACCACCACAGTGAGGTCCCGGAACCTGTTGTCCATTCCGGAGCACGGGGGTCTGGACGAGCCTCATCCCGTCGGGCTGGGCGGGGAATATCCTGAATGGGACCGTCAGGCCGACGTAATGGCAGCCTGGCGTTTAGAGCAGCAGCACAACCAGGAGCAGGCGGAGCTTCGTCAAGCGGAGCCCCGCCCACTCATACTAAACACCAACGAAACACGAGCGCAGAAGGCCATTCTCATAGACCTGCACTCGCACAGGTCAGAGCAGTGGTCAAACGAGACGGCTAAAGTCATACAGCTGGAGAGGACCGTCAACGAAACATCCTGAGATCACTGCAGCGACGGCCCATGGGCTTCATATTTATAGTATTGTTTTACTTAgatgtcctttttttaaaataaacaaaaactcaaaaatgtatttttattccattCCAACAGTATATCAAATTTTGATACTCGTGtatgctattttcttttttttttatatgctttgaattttgttttccatattccttcttttccttttttcaccTATTTGCCCCGTGCTACTGagaaaatgtgtagtaatataTTGAATTTGCATCCGTTTTCGTGACAACGACCGTAGCATGTCAATCAGAACACGGCACCAAAGAGTCAAAAGATAGTGCAAAGGTTCAAACTTTATTACGATTAAAGACTAAAAGCTCCGTTTACAGTTTGACGATGACGAGTTTCCAAAGCATTTgtaatgaatatgtaaatatttgcaggATCCTGTATTGTAAGTGTGTTGGGAGAGATATGAATTGATGAGACGTTTGTGGTGGAGGGCGACAAAATCGGGACGATACGGACTTGACATGAAAAGGACGGATGCTCTCCGTCCCTGAAGTCCCTCATATGACGTCGCCCTCTTTATTAAGGACAGATGGCCCTTTTTGTCCTCATCTGGCCACCATCCAGCCCCCGTCTGCGCTCTTGAGGGAGTAAAAGACGCTCGCTGACAAGTCTAGCGTTCTCTTGCTCTGATATGAACGGTTGTGACGACCCGAGTCCCGAGCGATCTGTGGACTCTCTTGCACTGCTTCCTCGTAGAATTgatctgttatttattatttttagcatgcCTGTCATCCTTTTATCCTGGAAACAAGAGCATTTTGAAGGAGATTCGAAGGAGGAGGTTTTGTCCCGATGCTATGCATTCAGATGCCAACGTTGGTCGCGCAGCATCCGTGTCGGAAATGTTATGTGTTTGGCATAACGTCTTACCTATGTTAGACTTTCATTGCATCACAGGGTCTACCTGAAATCACTCTgccttgtttttttctgcaagcaaataaatattttccttaGTAAAAGCATTGCAAA

Function


symbol description
creb3l2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within regulation of ER to Golgi vesicle-mediated transport and regulation of extracellular matrix constituent secretion. Predicted to be located in endoplasmic reticulum. Is expressed in cranial cartilage and pectoral fin. Orthologous to human CREB3L2 (cAMP responsive element binding protein 3 like 2).

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 2 isoform X1

GO:

id name namespace
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0060628 regulation of ER to Golgi vesicle-mediated transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0006986 response to unfolded protein biological_process
GO:0003330 regulation of extracellular matrix constituent secretion biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043237823.1 True 2946 mRNA 0.51 12 1369392 1385823

Neighbor


gene id symbol gene type direction distance location
ssbp1 ssbp1,LOC107656434,LOC107658933,LOC107583954 coding upstream 647 1366719 ~ 1368745 (+)
c4h12orf56 LOC107583952,LOC107656394,LOC107726068,LOC107711499,LOC107658934,LOC107581038 coding upstream 3322 1352403 ~ 1366070 (+)
zgc:162331 zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629 coding upstream 17719 1346185 ~ 1351673 (+)
waslb wasl,LOC107725914,LOC107658745,LOC107583945,LOC107656407 coding upstream 97304 1257733 ~ 1272088 (+)
grm8a grm8a,LOC107584025,LOC107658943,LOC107711511,LOC107656388,LOC107725917 coding upstream 257873 970135 ~ 1111519 (+)
dgki dgki,LOC107658929,LOC107656386 coding downstream 690 1386513 ~ 1425816 (+)
LOC122342464 LOC107658928 coding downstream 38804 1424627 ~ 1429426 (+)
rassf3 rassf3,LOC107711494,LOC107656425,LOC107658927 coding downstream 44795 1430618 ~ 1463236 (+)
zgc:194209 zgc:194209,LOC107584030,LOC107658744,LOC107725912 coding downstream 77761 1463584 ~ 1468477 (+)
tbc1d30 tbc1d30,LOC107658925,LOC107725910,LOC107584031 coding downstream 87930 1473753 ~ 1486677 (+)
G24925 NA non-coding upstream 82319 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 242012 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 436281 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 717799 649509 ~ 651593 (+)
G24758 NA non-coding upstream 744167 623251 ~ 625225 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 170569 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 303155 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 402808 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 444855 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 514073 1899896 ~ 1901886 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 37549 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 78168 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 120223 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 703862 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 930040 434343 ~ 439352 (+)
LOC122343488 NA other downstream 284689 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 398414 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 608417 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1713914 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1733692 3119515 ~ 3306758 (+)

Expression



Co-expression Network