ccnd2b (ccnd2b,LOC107725932,LOC107658897,LOC107583977,LOC107656417,LOC107710106,LOC107579638)


Basic Information

Item Value
gene id ccnd2b
gene name ccnd2b,LOC107725932,LOC107658897,LOC107583977,LOC107656417,LOC107710106,LOC107579638
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1717521 ~ 1726321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237827.1
atgtatttttgatgggTTGAAGAGAGGTTTACTTAAGGATTGGCTAGAATGCCGTGCATTTGCAATGACTGGGCAGGAAGAAGAGAATTTGAGCATTTTTTGCAACGTGAATTGAGCAGGAGGAGGGAGGGACTGACATTGCCTTTTGGGTGGTCATGCAGTAAGAAAAGTTGTTCTGCTTCATCTGTGTCTGTAGCTCAGAAGGAAAGATTTATGCTTGGGATCGCAGCCTCCGTGatgtaaaaagtgaaaaacagtGCAGACGAGTTGTGTTGATGCACAAGGCGTCCTTTTTGCATAGGCACAGCCACATGCAGCTGGCACTGTGAGGTGGTTATATTAGTTAGCATCACCGAGAAAAGCCCAAACATGGAACTTTTTTGCTTGGAAAAGGACGCGGTCACGCGAGCTCAGAGAGATCCCAACATCTTGTGCGATGAAAGAGTATTGCAAAGTCTTTTAACAGTGGAGGACAGATATGTTCCGCAGGGACcctattttaaatgtgtacagAAGGATATTCAGCCTTTTATGAGGCGGATGGTCGCGACGTGGATGTTGGAGGTTTGTGAAGAGGAGAAATGTGAAGAGGATGTCTTTCCCTTGGCTATGAACTACCTGGACAGATTTTTAGCTGCAGTTCCTACGAGAAAATGTTATCTACAGCTCTTAGGGGCTGTGTGTCTTTTCCTGGCTTCAAAATTAAAAGCTTGCCAACCGCTGTCGGCCAGGAAGCTCTGCATGTACACAGACAACTCCATTACATCTCAACAACTGCTGgAGTGGGAGTTGGTGGTTCTTAGTAAATTGAAATGGAACCTGGCTGCCATCACCCCACTTGACTTTATCGAACACATTCTGCACAAATTGCCCTACCCTGAAGACAGACTGACGCTGATCCGCAAACACGCGCAAACCTTCATCGCCCTCTGTGCAACAGATCACAGCTTCACCATGTACCCTCCCTCCATGATCGCCACAGGATGTGTGGGGGCAGCAGTATGTGGCCTTCAGCCTGACCAGAGCGACCAAAATCTGTGGGGGGACAGTCTGACGGAGCTGCTGGCTAAAATCACCCACACTGAGGTGGACTGTCTGAAGTCCTGTCAAGAGCAGATCGAGCAGCTACTGACCAACAGCCTGAAAGAAAGTCAACAAcagcatcagcagcagcaggagggCAGAGCCAGCAGCAAAGGGTTGCAATCGCAAAACATGTCCTGCACCCCTACAGATGTCCGTGACGTCAACTTATGATGCCGGTTTCTACCAAAGATTCAATTATTACTGTTACTGTATTTAAGATTAATTTCAAAGCCACATGGTGATATGCGCGTAACACAAGCTTGATATTTTATAACGGAGGGaaacagctgctgctgctgtctcaTGTCTGCAGGCGGTGGCAATTTAAAACATACTTGAATTAAACTGAATTGGCCTCAAACCATGATTCAATAATGCAGTACGTTGCATATTGCTCAACAAAGAGCATACATCTGTCTTGGCTATCATATGCAActgtgttataattattattataatttatgtggttatttaataattataataataatacctgttattgttcaaaatattatttttatcttacaaaatgtatttgcttagtaattgtcttttttttttttttttttaaatataacataggATGCATGCGATCCCACGATAATGCTATTCTACAGAATTGATAGTAACATCCGTCACTCCTTTCAGTGGGATCTGTTTGCTTATCGTAGAGATAGAAATACAATGATCTGATGAGTTACTTCCGGGTATAAGTAACTTTTATTATAGGGATTATTTACGGTGAATGTTATTGCATGAAATAAGCATATAAGAATATGTTAAACGGTTTCTATCCATGCATAATGGCCATCACAGCTCGCACGACAATTTCAGATGGACACTAAGCATGTAGCAAAAGTGGAGTAAAGGTGAGGTAGGGAAGGAAGGAAAGAGGTGAATGGAAGAATGCGGATGGAAAGTTTTTGCACGTGAAATATGAGTGGTTCCGGAATGCTCTGTAATGATTAAGCATGATGCTTTTTGCTCGTTTGATCTGTTTAAACGCCATCACTTTTTGGGTCAATGACACTTGCTATGCTGGAGGGATTTAATCATTTGGGAGTCTGAAAATCCTCCTCAGCAAAGACACGATACAAATGCACTTTCAGATATCACCTCTCACTGGTTATCCATGGTATACAAGAGGAGGGCGAATCGTTTCtaaagggttttatttttttgcatagtttttcttaagttatttttgttttggggcTGGTTTCCCATATTAGGTGTGCTTTGCGGGtaatagttttaaatttagACCAATAAATTTAGACCAGTAACTGATCCAACAGTCAACTGCCAATAGAAATGGCGAGGTTTGACATGTCAAGATTGGTTGCGTTTTACTTTAGTTGTGTGGAATTCATGTCAATATAGATAGGACATCATCAAATTTCATTAAAtcactattttattttctcaaaatatcagTCATCTACTTGAACGTTTCTCATATATAggaaaaagatattttgaaaaattatgcagttttcttttctatttcttcCTCGGTCTGTTCTTGCACTTTTGGTTTCTCCAGTCAGTGGACCTAAAAGCAACTCAAGAGGTGTGAGGTGTTTGAAAAGTTTACTTCAAATATGTTATGTGTTGAGCTGCCACGGACGTGCCATTCCAACACAACTATGCAAATGAGCTCcgtgttattctttttttttttttttttcaaacaatgttCATTTTCATCGTTCACTTATTTGAACACATTTAAGTTTGTGTGCTATTATATCCTTACGTTCATTTTGTGTTCTTcccattcttttatttttgtgtaagtGTTTGAACTTGTGTTCCAGTGCTgctaaaagaaaaggaaaaaagaaaaaagagctgATGCATAGGCTTGATCTTAAATCCGGTTTCCATGTTGCTGCTATATCACAATTATTGAAcgtgttttcatttctgttttctctttgcaTTTACACTGTCAATCATTTTCACGCATGAAGTGCCTTGGCGTTAACTTGCAGATATTTGCATGAACAGTTTTGcttcatttgtgtttaatgTCATCTAACTTAACTCTTGCCTGAGTTCTTTTTCtagctgtttttctttgtgttatGAAACTCCTTCATcgtttttaaatgatgttcCTGCCCACAGTCACAGTACCTCACAGTAGCCTACTTAAGTCAGAAGTTTATAGAGGAGTAGTTGGATTAAAAAGAGATGTTGAAGTTCCTCAACTAGTTAGTTACCCTACAGGTAAATCCTCCAGGTTTGTTCTTTTAGTAACTTCTCAGATACACACTCACCATACAGCTATAAATGTATTGTCTTACCAGGCGGTGGATGTAAGACCGGGGCAACGTTTagatacaaaatattgtttttaattttgtttgaattCACTTGAAAGAGCCACTCTTTGTTTCACCAACACACCTAAAAATATCCAAAGACATTGCATTTCAGCAATaccctcatttttatttttgccctAGGACACTTACCTCATTTGGACCAATCGgacattcaattaaataaatctcaatttgaaaagtaaaa

Function

symbol description
ccnd2b Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition; positive regulation of G1/S transition of mitotic cell cycle; and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in ductal carcinoma in situ; invasive lobular carcinoma; prostate cancer; and transitional cell carcinoma. Orthologous to human CCND2 (cyclin D2).

NR:

description
PREDICTED: G1/S-specific cyclin-D2-like isoform X1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237827.1 True 3624 mRNA 0.39 5 1717521 1726321

Neighbor

gene id symbol gene type direction distance location
ada2b cecr1b,LOC107583967,LOC107656410,LOC107711479,LOC107658918,LOC107725927,LOC107581132 coding upstream 51376 1661550 ~ 1666145 (+)
atp6v1e1b atp6v1e1b,LOC107658907,LOC107583987,LOC107711482,LOC107579815,LOC107725938,LOC108442797 coding upstream 56122 1658354 ~ 1661399 (+)
snap91b si:ch211-214j24.9,LOC107583964,LOC107725923,LOC107658883,LOC107711483,LOC107656397,LOC107579412,LOC108443062 coding upstream 63762 1635177 ~ 1653759 (+)
si:ch211-214j24.15 LOC107658740,LOC107725906,LOC107584035 coding upstream 82914 1629593 ~ 1634607 (+)
LOC122342485 osgep,LOC107656414,LOC107583976,LOC107579596,LOC107658895 coding upstream 92630 1622079 ~ 1624891 (+)
tmem209 tmem209,LOC107725925,LOC107658886,LOC107583965,LOC107656402,LOC107579462 coding downstream 462 1726783 ~ 1731685 (+)
ahcyl2b ahcyl2,LOC107725924,LOC107710138,LOC107583963,LOC107658882,LOC107656398,LOC107579442 coding downstream 5834 1732155 ~ 1760369 (+)
strip2 strip2,LOC107725919,LOC107656389,LOC107658739 coding downstream 35822 1762143 ~ 1783683 (+)
si:dkey-14d8.21 LOC107725922,LOC107583962 coding downstream 65986 1792307 ~ 1797892 (+)
LOC122343361 LOC107725905,LOC107658738,LOC107584038 coding downstream 74165 1800486 ~ 1804566 (+)
G25071 NA non-coding upstream 24132 1688978 ~ 1693389 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding upstream 159743 1556392 ~ 1557778 (+)
G24925 NA non-coding upstream 430448 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 590141 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 784410 864840 ~ 933111 (+)
G25030 NA non-coding downstream 62310 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 104357 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 173575 1899896 ~ 1901886 (+)
G25192 NA non-coding downstream 179509 1905830 ~ 1906106 (+)
G25193 NA non-coding downstream 180879 1907200 ~ 1908927 (+)
LOC122343488 NA other upstream 44562 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 385678 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 426297 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 468352 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 1051991 654092 ~ 665530 (+)
LOC122342451 NA other downstream 57916 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 267919 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1373416 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1393194 3119515 ~ 3306758 (+)
G25514 NA other downstream 1755308 3481629 ~ 3502094 (+)

Expression


Co-expression Network