phlda1 (phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151)


Basic Information

Item Value
gene id phlda1
gene name phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 250141 ~ 252421 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237830.1
CGCGAGAGAAAACCCCCGCGCGCGCTCCGTGCCCATCATCGCGCTCCTCGCAGATCCTCAGGCTCCAACCAACCCACCCACCCTCGCTCCGAAACCCCGAGCGTTTGATGCGCGATCGGAGGCGATGCTGGAGACCGGCGGCGGCGCGGTGCTGAAGGAGGGCGCGCTGGAGAAGCGCAGCGACGGTCTGCTGCAGCTGTGGAAGAAGAAGCGCTGCGTGCTGACCGAGGAAGGACTGGTGCTCCACCCGCCCAagcaccaccaccaccaccacgaCACCGGCTGCAAGGCGAAGGAGCTGCACTTCGCCAACATGAAGACGGTGGACTGCGTGGAGCGCAAGGGCAAGTACGTGTACTTCACGGTGGTGATGTCCGAGGGCCGCGAGATCGACTTCCGATGCCCGCAGGACGAGGGCTGGAACGCGGAGATCACGCTGCAGATGGTCCAGTACAAGAACCGCCAGGCGATCCTGGCCGTCAAGTCCAGCCggcagaagcagcagcagctgctCGTGGTCTCCGCGCAGAAGGTGCTCCGAAACGCGCAGTAGGACGCCGTTACCGACGGACGCTTCCGCGCGTAAAAAGCGCTGGATGCGCGTTACCCACGTCGCTTTTTAGTGTCACCTCGCGCGCACGGACGCTCTCCGTGCATCGAAAGACGTTTCGGCTGAATTAGCACCGGGGATGTGTCCTCTCGGAGGCTGTACGCCGGGCccggggcaagttgtcacagcGACGGAGAACCCGTTTGCGTGAACGTCGCGGAGCTATGAGTGTCGCTTTCAAACGTATAGCACAAAGCAGATTTAAATAAGCATCGGTTTTGTCAATCCTCCCCTCGAAGTGAGATTTATTTTGGCGTTTTGGTGAACTGTGAAGCCACCCCGGAGCGTGCACGAAACCAGGCACGAGTCGCAAGGGCGCTTTGtttctttgagtttttttttaaatgccataaATCATCAGGATATTAGGCGAAGAACATGTTCCGTAAAGCTACTTCTTTTAATAGTAACgcgcattgctaaggacttcatttggacagctttaaagtagttttgatttctttgctCCCTCAGAGTCAAGATTTTCAAACGATTGCATCTCAGCAGTATTTACGCATCTTTCAATTGATTTAAAAAGGGTTTTGTGGACCAGGGTCACGTTTATTTCTAAGCTAAAGCTCAAATATATAGGGTCAATTAGATAAATAGGGACACTTTTGCCATTGAGATACCTGGGAAAATGTcccaaatattttgaatgaactcCTATTGAAGTTAACGCTCTTTTCAGGGCAAGATAATTATACGATAATGTCCAgctggggcaagttgtcacaatgCAATTTTAACCCATTTGCTTGTCATATTGTCTCTTCCTTGAattgttttttgtgtatttttatcgCTTGTTTTCCCCTTCTACAATCCTCGCTCCCAGATCAGTGTCATACAAAGAAGACTGTTCCCactgtgacaacatgccccgctTTATGCATTCAATGAACTGTATTTTCTAGACACGGATGGTTCACGATTGTTTGACGGACAGAGAAGAAACACCGGAGTCAAGGTGTGACAGCTAGCCCCGGTCTCTCTGCGAAACGCCTTCAGTGCGTCATCGCTCGTCTGGCCCGGACAGAAAAGCCACCATCACTTTCCATTTCAGCGCGGCTCCAGACACGCGATCGATATCTTCCAGGAGACCCGAAAGGCCAATCTGTTCCGGTCCAGACCGCAGTCTGCATGGGTTTTAAAGAGACTGAAAAGCTGCAGACTTGATCTTTCTCTGACCGGAGATGCACAGCGCTGAATTATGCATCCcgtcatgtatttatttgtacatattttttgtagCAGGCCATTTGCATATCTGAATGTCGGGTTGTGTTTCTTAAAGTCCGTCGGATGCACAATGAgcttttgattttcttttgtttgtctgtgtaaCGAGGAAGATTCGCGCAGGACCAACGGCTCTCGGTTGCTATTCAAACCAAAGAATGTCGAGACGTTTGCATCTGCTTCTACCTTGTGTTTTGTCGAGGGTTATTGGTTGCGATCGTCGACCTCAGTCGGTGCGGACGCCACACGGAAATAAATGCGGGTTTAATGGTGGCCTCTGTCCTGACCGAGCGTGTCGATCTGATCAATATAGTGTTGCATCAAATGCATGGAGACAGGATGCTTGTGtgaaaatgatgttttgttGATGGGACGCTGATGCCAATGCCACTGTCATACCTTTGAAATATAcattccatttaaaatgaa

Function

symbol description
phlda1 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be involved in positive regulation of apoptotic process. Predicted to be located in cytoplasm. Is expressed in several structures, including basal plate midbrain region; hindbrain neural plate; nervous system; neural crest; and pronephric duct. Orthologous to human PHLDA1 (pleckstrin homology like domain family A member 1).

NR:

description
PREDICTED: pleckstrin homology-like domain family A member 1

GO: NA

KEGG:

id description
K23793 PHLDA; pleckstrin homology-like domain family A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237830.1 True 2281 mRNA 0.51 1 250141 252421

Neighbor

gene id symbol gene type direction distance location
krr1 krr1 coding downstream 44777 199811 ~ 205364 (-)
ccdc107 ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866 coding downstream 65711 177273 ~ 184430 (-)
kcnc2 kcnc2,LOC107555885 coding downstream 78807 136003 ~ 171334 (-)
cpsf6 cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007 coding downstream 163531 75381 ~ 86610 (-)
nap1l1 nap1l1,LOC107656454,LOC107555881,LOC107658961 coding upstream 845 253266 ~ 267765 (-)
csrp2 csrp2,LOC107708016,LOC107658959,LOC107656449 coding upstream 107746 360167 ~ 369423 (-)
e2f7 e2f7,LOC107707966,LOC107658780,LOC107656240,LOC107576735,LOC107584022 coding upstream 119449 371870 ~ 383326 (-)
cog5 cog5,LOC107583928,LOC107658957,LOC107656447,LOC107590548,LOC107729135,LOC106609192 coding upstream 131058 383479 ~ 449062 (-)
pde3a pde3a,LOC107590531,LOC107656239 coding upstream 248183 500604 ~ 580345 (-)
G24724 LOC107555883,LOC107708011,LOC107658963 non-coding downstream 36895 212605 ~ 213246 (-)
G24712 NA non-coding downstream 41321 205893 ~ 208820 (-)
G24713 NA non-coding downstream 55982 191396 ~ 194159 (-)
G24792 NA non-coding upstream 352462 604883 ~ 605114 (-)
G24795 NA non-coding upstream 359970 612391 ~ 612843 (-)
G24796 NA non-coding upstream 360706 613127 ~ 613653 (-)
G24799 NA non-coding upstream 367756 620177 ~ 620588 (-)
G24802 NA non-coding upstream 370908 623329 ~ 624257 (-)
G24708 NA other downstream 58899 186460 ~ 191242 (-)
si:dkey-97m3.1 NA other downstream 176460 47610 ~ 73681 (-)
LOC122343420 wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727 other downstream 216214 19991 ~ 33927 (-)
G24689 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107711503 other downstream 239040 10833 ~ 11101 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other upstream 27577 279998 ~ 341953 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other upstream 154221 406642 ~ 496868 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other upstream 612263 864684 ~ 933108 (-)
G24875 NA other upstream 816739 1069160 ~ 1070096 (-)
ptprz1b ptprz1,ptprz1b,LOC107725913,LOC107656236,LOC107658935,LOC107581028 other upstream 1036893 1289314 ~ 1323397 (-)

Expression


Co-expression Network