LOC122343398 (LOC107726825,LOC107584742,LOC107689735)


Basic Information

Item Value
gene id LOC122343398
gene name LOC107726825,LOC107584742,LOC107689735
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13702383 ~ 13708079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237835.1
CTGTACTGTACTGGCTGATCTACAATGGggtaaataattaatagtgCTTGTTAATGACTATATATAAGCGTAAATGCAAGTTTAGAGATCACTCATTTGGgaacatttcagcatttttccGTGCACGTCTCTTTGTGAAGGCACCTCTGGACAATTCACCATGACAGCAGATGGTAACCCAGACAGGTTCACTGAGCCCAGACCAATGGAATATGGAGGTCACAATCAGAAAACGCCTCAAACTAAATGTTGTTCTCCAACTCTGAAGATCTTTATAGGTTTACTTGCCTTCTCTTATTTCACAAAAACCCTGACGGGATCTTACACCAAAAGTACCCTCACTCAGATTGAGAGGCGGTTTGAGATCTCAAGCTCTACGGTTGGCATCATTGATAGCAGCTTTGAAATGGGTAATCTGTTGGTCATTACTTTTGTAAGCTACTTTGGCGCTAAGTTTCACCGACCAAAGATCATTGGATCAGGGGTCCTGTTGATGGGTGTAGGGACACTGTTAATGGCTTTACCTCACTTCATCATGAGCCGATATAAGTTCGATACAGCTGCCGCCCACATTAATGATCCTTATAATGTCACAGTGAGCTCCACATGCTCATCAGACCACAAGAATCCCGTTCAACAGCTTGATTCTGGGTGTCTAAAAGGGGAAGCGGAAAGCTCACCCATGTGGATGATTTTACTGTTTGGAAATATTTTGCGTGGCATTGGGGAAGCAAGTATCGGCCCTCTGGGAATGTCATTCATAGACGATTATGCACATCCAGAAAACTCGGCTTTCTACATTGGATGTCTGCAAACGCTAGGAGTGATTGGGCCAGTTTTTGGTTACTCACTTGGTTCTCTGTGTGCTAGTCTCTATGTGGACATTGGCTTCGTGAATCAAGAGAGTGTGACCATCACCCCTCAGGACTCTCGCTGGGTTGGGGCCTGGTGGTTGGGTTATGTGCTTTCTGGGCTGTTGACCCTTCTTGCTGCTTTGCCTCTCTGGTTCCTGCCAAGAGCTCTACCTGAATACCCCCAAACCTCTAAACTAGACCACCCCTCaaaccaacacaaacacacgctcagCATTACAGAGATAGCCAAAGATTTTGGACCATCTCTAAAGCGTCTGCTTACCAATGGGAGATATCTCCTGTATCTGGTTTACAGTGTGTTGGCATTCAGTggctttatcatttttataacataCTTGCCAAAGTATTTGGAGCAGCAGTTTGGACAAAGCGCATTTAAGACTAATTGTCTCATAGGAGTGACATCTATTCCGTCAGCGGCTCTGGGAATGTTCTTTAGCGGTTGGATCATGAAGTATTTCAAACTGGATGAGCTGGGATCTACAAAACTGTTGTTCTTCTCCTCTGTAACCGCATTGATTTGCACCATACCATTCTTTGCTCTCAGCTGTGAAAACATAGATGTCGCTGGGGTCACAGTGCCCTATCaaggATCTGTTGAAGTTCAAGATATAAGCATACTCACTTCATGCAATGCTGACTGTGGGTGTCCTGACTTCCAATGGGATCCAGTGTGTGGACAAAATGGAGTGACCTACATCTCTCCATGCCATGCTGGCTGCAAGTCCACTCTGGGTGCAGGACGCAATATGACATTCCACGGCTGTACATGTATCCAGAGCTGGGGACTGACTTCTGGGAACTCCTCAGCCGTGCTCGGACAGTGTCCACGAGAGACTAGCTGCACTACAATGTTCTACATCTTTCTGGCACTGATGTCCCTCGCCTTCTTCGTGTACTGTCTGAGCACCGTTCCCTTCTTCCTCATTTCACTGAGgATCGTGGATCCTGCGCTTAAGTCTCTCTCAGTGGGTGTATTTACATTCGTTTTAAGAGTTTTTGGTGGTATTCCTGCTACCATTTGCTTTGGTGCTCTGATTGACTTGACCTGCCTGAAATGGGGCCAGAAGAAATGCGGGGGAAGCGGTGCATGCAGAATATACGACACTGAAACTTTCAGGTACCTATTTCTGGGACTGATCGGCTCTCTTCGGGTAATTGGCTATACTCTATTATGGATTTTCACCGCAGGTCTTAAGAGAAAAGTACAGAACGATAAGCAAATATCCAAGGACAAAGAACTCCAATACCCTGTGCTATATGATCCAGAACACgaaaaatttctaaaataatgttttgcctcattttatttgttcttgttaATGTATTTCTGCAACCAGTAGCCTGAATATACTTTTTGCTGTTTATCTTCTAtgacatttacatatatttatgtataaatttaacatttactttGGTTTCTCATGTcatgacattatatataatattatgtcaTATCTGTCATAATACCCTATGTAATAAAAGTAAGGAATAATTGA

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237835.1 True 2374 mRNA 0.43 15 13702383 13708079

Neighbor

gene id symbol gene type direction distance location
LOC122343316 NA coding downstream 14743 13683225 ~ 13687640 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding downstream 23295 13674271 ~ 13679088 (-)
LOC122343493 LOC107726837,LOC107748473,LOC107689714,LOC107584715 coding downstream 37246 13652525 ~ 13665137 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding downstream 54334 13635613 ~ 13648049 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding downstream 188979 13502936 ~ 13513404 (-)
slco1e1 slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035 coding upstream 713 13708792 ~ 13717223 (-)
slco1d1 LOC107689241,LOC107597003,LOC107584712,LOC107689720,LOC107689242,LOC107726840 coding upstream 10525 13718604 ~ 13729434 (-)
LOC122342857 LOC107689242,LOC107584712 coding upstream 28526 13736605 ~ 13748988 (-)
LOC122342931 LOC107689242,LOC107689241,LOC107584712,LOC107689720,LOC107597003 coding upstream 42755 13750834 ~ 13760856 (-)
LOC122343235 LOC107689737,LOC107716193,LOC107689255,LOC107584741,LOC107716201 coding upstream 55311 13763390 ~ 13784708 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding downstream 89612 13610216 ~ 13612771 (-)
LOC122342564 NA non-coding downstream 358126 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 382635 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 450349 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 456995 13242506 ~ 13245388 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 112617 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 158698 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 161343 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 171952 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 173226 13881305 ~ 13882012 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other downstream 3668 13692471 ~ 13698715 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 269680 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 340445 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 515493 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1213202 12465612 ~ 12489181 (-)
LOC122343280 NA other upstream 107495 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 267278 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 447413 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 979794 14687873 ~ 14704622 (-)
LOC122342642 pfkfb3 other upstream 1100464 14808543 ~ 14810711 (-)

Expression


Co-expression Network