LOC122343399 (LOC107726825,LOC107689735,LOC107584742)


Basic Information

Item Value
gene id LOC122343399
gene name LOC107726825,LOC107689735,LOC107584742
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13692471 ~ 13698715 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237836.1
TTTAGAGATCGCTCATTTGGGCATTTTAGTGTCTCCTCTCTTTGTGAACGCACCCTGGACATTTCATCATGACAGCAGATGGTAACCCAGACAGGTTCACTGAGCCCAGACCAATGGAATATGGAGGTCACAATCAGAAAACGCCTCAAACTAAATGTTGTTCTCCAACTCTGAAGATCTTTATTGGTTTACTTGCCTTCTGTTATTTCACAAAAACTCTAACGGGGGCTTACACCAAAAGTACCATCACTCAGATTGAGAGGCGGTTTGAGATCTCAAGCTCTAAGGTTGGCACCATCGATAGCAGCTTTGAAATGGGTAATCTGTTGGTCATTACTTTTGTCAGCTACTTTGGCGCTAAGTTTCACCGACCAAAGATCATTGGATCAGGGGTCCTGTTGATGGGTGTAGGGACACTGTTAATGGCTTTACCTCACTTCATCATGAGCCGATATAAGTATGATACAGCTGCCACCCACATTAATGATCCTTATAATGTCACAGTGAGCTCCACATGCTCATCGGACCACAAGAATCCCGTTCAACAGCTTGATTCTGGGTGTCTAAAAGGGGAAGCGGAAAGCTCACCCATGTGGGTCATTTTACTGTTTGGAAATATTTTGCGTGGCATTGGGGAAGCAAGCATCGGCCCTCTGGGAATGTCATTCATAGACGATTATGCACATCCAGAAAACTCGGCTTTTTATATTGGCTGTCTGCAGACACTAGGAGTGATTGGGCCAATTTTCGGTTACTCGCTTGGATCTTTTTGTGCTAGTCTTTATGTGGACATTGGCTTAGCAAACCAAGAGAGTGTGACCATCACCCCTCAGGACTCTCGCTGGGTTGGGGCCTGGTGGTTGGGTTATGTGCTTTCTGGGCTGTTGACCCTTCTTGCTGCTTTGCCTCTCTGGTTCCTGCCAAGAGCTCTACCTGAATACCCCCAAACCTCTAAACTAGACCACCCCTCaaaccaacacaaacacacgctcagCATTACAGAGATAGCCAAAGATTTTGGACCATCTCTAAAAAGTCTGTTTACCAGTGGGATTTATCTCCTATACATGGTTTTCAATGTGTTGGCATTCAATGCCTTTACCATTTTCATAACATACTCGCCAAAGTATTTGGAGCAGCAGTTTGGACAAAGCGCATCTAAGACCAATTTTCTCATAGGAGTAATGTTTATTCCGTCAGCGGCTCTGGGTATGTTCTTAAGCGGTTGGATCATGAAGAGGTTTAAACTGGATCTGTTGGGAGCTTCAAAACTGTTGTTCTTCTCCTTTGTAATCTCATTGATTTTCAGCATACCATACTTTGCTCTCAGCTGTGAAATCACAGATGTCGCTGGGGTCACAGTGCCCTATcaaagATCTGTTGAAGTTCAAGATGTAAGCATACTCACTTCATGCAATGCTGACTGTGGGTGTCCTGACTTCCAATGGGATCCAGTGTGTGGACAAAATGGAGTGACCTACATCTCTCCATGCCATGCTGGCTGCAAGTCCACTCTGGGTGCAGGACAGAATATGACATTCCACGGCTGTACATGTATCCAGAGCTGGGGACTGACTTCTGGGAACTCCTCAGCCGTGCTCGGACAGTGTCCACGAGAGACTAGCTGCACTACAATGTTCTACATCTTTCTGGCACTGATGTCCCTCGCCTTCTTCGTGTACTGTCTGGGCACCGTTCCCTTCTTCCTCATTTCACTGAGGATTGTGGATCCGTCTCTGAAGGCTCTCTCGGTGGGTGTATTTACGCTAGTTTTAAGACTTTTTGGTGGTATTCCTGCTTCCATTTGCTTTGGTGCTCTGATTGACTTGACCTGCCTGAAATGGGGCCAGAAGAAATGCGGTGGAAGCGGTGCATGCAGAATATACGACACTGAAACTTTCAGGTACCTATTTCTGGGACTGATCGGCTCTCTTAAGATAATTAGCTGTACTATGTTatggattttcattttaaagattaaaaagaacGTACAGAAAGACAAGCAAATATCCAAGGACAACGAACTCCACTATACTGCGCTACGTGATCCAGAACAGgacaatttctaaaataatttataataattttcttttgttcctgtttttttttccattttttttatttctgtcaccAGGTGCCTGAGTATCATCTATTCCATTTATCTGGTGTTCCACTTCCTTCAAAGTTATTTATGGTGATTTCTCACCAGTGCACGAATGTTGTACATGTAAATTTAAGTAGTTTTCACTTGGTTACTTACTGTGTTACcttgattaatattcataataaaacatatttaattttataatgcattactgtGATCGGTGTCATGAAtcaaaaaatgaccaaaagtcACCTTGATACTCTATTTGTGGgtgttttaaattttgtatACTCATGtgaaactgatatttttcacaaaaatttgTTGTGAAACATACTGTGCAACGGTATAAGAAAAAGGCAAACGCTGCGCAGTTGCAAGttctaataaattatataaatgtacaaacaGTA
>XR_006250766.1
TTTAGAGATCGCTCATTTGGGCATTTTAGTGTCTCCTCTCTTTGTGAACGCACCCTGGACATTTCATCATGACAGCAGATGGTAACCCAGACAGGTTCACTGAGCCCAGACCAATGGAATATGGAGGTCACAATCAGAAAACGCCTCAAACTAAATGTTGTTCTCCAACTCTGAAGATCTTTATTGGTTTACTTGCCTTCTGTTATTTCACAAAAACTCTAACGGGGGCTTACACCAAAAGTACCATCACTCAGATTGAGAGGCGGTTTGAGATCTCAAGCTCTAAGGTTGGCACCATCGATAGCAGCTTTGAAATGGGTAATCTGTTGGTCATTACTTTTGTCAGCTACTTTGGCGCTAAGTTTCACCGACCAAAGATCATTGGATCAGGGGTCCTGTTGATGGGTGTAGGGACACTGTTAATGGCTTTACCTCACTTCATCATGAGCCGATATAAGTATGATACAGCTGCCACCCACATTAATGATCCTTATAATGTCACAGTGAGCTCCACATGCTCATCGGACCACAAGAATCCCGTTCAACAGCTTGATTCTGGGTGTCTAAAAGGGGAAGCGGAAAGCTCACCCATGTGGGTCATTTTACTGTTTGGAAATATTTTGCGTGGCATTGGGGAAGCAAGCATCGGCCCTCTGGGAATGTCATTCATAGACGATTATGCACATCCAGAAAACTCGGCTTTTTATATTGGCTGTCTGCAGACACTAGGAGTGATTGGGCCAATTTTCGGTTACTCGCTTGGATCTTTTTGTGCTAGTCTTTATGTGGACATTGGCTTAGCAAACCAAGAGAGTGTGACCATCACCCCTCAGGACTCTCGCTGGGTTGGGGCCTGGTGGTTGGGTTATGTGCTTTCTGGGCTGTTGACCCTTCTTGCTGCTTTGCCTCTCTGGTTCCTGCCAAGAGCTCTACCTGAATACCCCCAAACCTCTAAACTAGACCACCCCTCaaaccaacacaaacacacgctcagCATTACAGAGATAGCCAAAGATTTTGGACCATCTCTAAAAAGTCTGTTTACCAGTGGGATTTATCTCCTATACATGGTTTTCAATGTGTTGGCATTCAATGCCTTTACCATTTTCATAACATACTCGCCAAAGTATTTGGAGCAGCAGTTTGGACAAAGCGCATCTAAGACCAATTTTCTCATAGGAGTAATGTTTATTCCGTCAGCGGCTCTGGGTATGTTCTTAAGCGGTTGGATCATGAAGAGGTTTAAACTGGATCTGTTGGGAGCTTCAAAACTGTTGTTCTTCTCCTTTGTAATCTCATTGATTTTCAGCATACCATACTTTGCTCTCAGCTGTGAAATCACAGATGTCGCTGGGGTCACAGTGCCCTATcaaagATCTGTTGAAGTTCAAGATGTAAGCATACTCACTTCATGCAATGCTGACTGTGGGTGTCCTGACTTCCAATGGGATCCAGTGTGTGGACAAAATGGAGTGACCTACATCTCTCCATGCCATGCTGGCTGCAAGTCCACTCTGGGTGCAGGACAGAATATGACATTCCACGGCTGTACATGTATCCAGAGCTGGGGACTGACTTCTGGGAACTCCTCAGCCGTGCTCGGACAGTGTCCACGAGAGACTAGCTGCACTACAATGTTCTACATCTTTCTGGCACTGATGTCCCTCGCCTTCTTCGTGTACTGTCTGGGCACCGTTCCCTTCTTCCTCATTTCACTGAGGTTCTGTTTCACTTGTTTCCATCGCATTTTAATGCAGTTGCTACATATATTCATTggcatttattgtatttgattCAGTTTCACACATTCtacaacatttaaagaaatcaaaatttaatatatttattttgtccaaGCACATGGCTGTTTTTGTGGTAAGCAGTTCATCCTTTCAAGTCAGTCCACACAAATGCCTTTGTAATGTTTAatccaaatatataaaaaaaaagctctttaatTTATCATTTCTCTCAGAAGTTCTGGTTCATGCAAACGTTAATGTCTAGAAAAACataaaacgaacaaacaagCTGTGAGTCGATTAATTAAAAGACTCAAGGTTAGCAACCCTATTGGGCTAGAACTGaatacatagattttttttgtcatatttttcatGTTGTATGATATATGTTCTTGCAGGATTGTGGATCCGTCTCTGAAGGCTCTCTCGGTGGTATTCCTGCTTCCATTTGCTTTGGTGCTCTGATTGACTTGACCTGCCTGAAATGGGGCCAGAAGAAATGCGGTGGAAGCGGTGCATGCAGAATATACGACACTGAAACTTTCAG
>XR_006250767.1
TTTAGAGATCGCTCATTTGGGCATTTTAGTGTCTCCTCTCTTTGTGAACGCACCCTGGACATTTCATCATGACAGCAGATGGTAACCCAGACAGGTTCACTGAGCCCAGACCAATGGAATATGGAGGTCACAATCAGAAAACGCCTCAAACTAAATGTTGTTCTCCAACTCTGAAGATCTTTATTGGTTTACTTGCCTTCTGTTATTTCACAAAAACTCTAACGGGGGCTTACACCAAAAGTACCATCACTCAGATTGAGAGGCGGTTTGAGATCTCAAGCTCTAAGGTTGGCACCATCGATAGCAGCTTTGAAATGGGTAATCTGTTGGTCATTACTTTTGTCAGCTACTTTGGCGCTAAGTTTCACCGACCAAAGATCATTGGATCAGGGGTCCTGTTGATGGGTGTAGGGACACTGTTAATGGCTTTACCTCACTTCATCATGAGCCGATATAAGTATGATACAGCTGCCACCCACATTAATGATCCTTATAATGTCACAGTGAGCTCCACATGCTCATCGGACCACAAGAATCCCGTTCAACAGCTTGATTCTGGGTGTCTAAAAGGGGAAGCGGAAAGCTCACCCATGTGGGTCATTTTACTGTTTGGAAATATTTTGCGTGGCATTGGGGAAGCAAGCATCGGCCCTCTGGGAATGTCATTCATAGACGATTATGCACATCCAGAAAACTCGGCTTTTTATATTGGCTGTCTGCAGACACTAGGAGTGATTGGGCCAATTTTCGGTTACTCGCTTGGATCTTTTTGTGCTAGTCTTTATGTGGACATTGGCTTAGCAAACCAAGAGAGTGTGACCATCACCCCTCAGGACTCTCGCTGGGTTGGGGCCTGGTGGTTGGGTTATGTGCTTTCTGGGCTGTTGACCCTTCTTGCTGCTTTGCCTCTCTGGTTCCTGCCAAGAGCTCTACCTGAATACCCCCAAACCTCTAAACTAGACCACCCCTCaaaccaacacaaacacacgctcagCATTACAGAGATAGCCAAAGATTTTGGACCATCTCTAAAAAGTCTGTTTACCAGTGGGATTTATCTCCTATACATGGTTTTCAATGTGTTGGCATTCAATGCCTTTACCATTTTCATAACATACTCGCCAAAGTATTTGGAGCAGCAGTTTGGACAAAGCGCATCTAAGACCAATTTTCTCATAGGAGTAATGTTTATTCCGTCAGCGGCTCTGGGTATGTTCTTAAGCGGTTGGATCATGAAGAGGTTTAAACTGGATCTGTTGGGAGCTTCAAAACTGTTGTTCTTCTCCTTTGTAATCTCATTGATTTTCAGCATACCATACTTTGCTCTCAGCTGTGAAATCACAGATGTCGCTGGGGTCACAGTGCCCTATcaaagATCTGTTGAAGTTCAAGATGTAAGCATACTCACTTCATGCAATGCTGACTGTGGGTGTCCTGACTTCCAATGGGATCCAGTGTGTGGACAAAATGGAGTGACCTACATCTCTCCATGCCATGCTGGCTGCAAGTCCACTCTGGGTGCAGGACAGAATATGACATTCCACGGCTGTACATGTATCCAGAGCTGGGGACTGACTTCTGGGAACTCCTCAGCCGTGCTCGGACAGTGTCCACGAGAGACTAGCTGCACTACAATGTTCTACATCTTTCTGGCACTGATGTCCCTCGCCTTCTTCGTGTACTGTCTGGGCACCGTTCCCTTCTTCCTCATTTCACTGAGGATTGTGGATCCGTCTCTGAAGGCTCTCTCGGTGGTATTCCTGCTTCCATTTGCTTTGGTGCTCTGATTGACTTGACCTGCCTGAAATGGGGCCAGAAGAAATGCGGTGGAAGCGGTGCATGCAGAATATACGACACTGAAACTTTCAGGTACCTATTTCTGGGACTGATCGGCTCTCTTAAGATAATTAGCTGTACTATGTTatggattttcattttaaagattaaaaagaacGTACAGAAAGACAAGCAAATATCCAAGGACAACGAACTCCACTATACTGCGCTAC

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237836.1 True 2517 mRNA 0.42 15 13692471 13698715
XR_006250766.1 False 2292 transcript 0.43 13 13693180 13698715
XR_006250767.1 False 2009 transcript 0.46 15 13692945 13698715

Neighbor

gene id symbol gene type direction distance location
LOC122343316 NA coding downstream 4831 13683225 ~ 13687640 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding downstream 13383 13674271 ~ 13679088 (-)
LOC122343493 LOC107726837,LOC107748473,LOC107689714,LOC107584715 coding downstream 27334 13652525 ~ 13665137 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding downstream 44422 13635613 ~ 13648049 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding downstream 179067 13502936 ~ 13513404 (-)
LOC122343398 LOC107726825,LOC107584742,LOC107689735 coding upstream 3668 13702383 ~ 13708079 (-)
slco1e1 slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035 coding upstream 10077 13708792 ~ 13717223 (-)
slco1d1 LOC107689241,LOC107597003,LOC107584712,LOC107689720,LOC107689242,LOC107726840 coding upstream 19889 13718604 ~ 13729434 (-)
LOC122342857 LOC107689242,LOC107584712 coding upstream 37890 13736605 ~ 13748988 (-)
LOC122342931 LOC107689242,LOC107689241,LOC107584712,LOC107689720,LOC107597003 coding upstream 52119 13750834 ~ 13760856 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding downstream 79700 13610216 ~ 13612771 (-)
LOC122342564 NA non-coding downstream 348214 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 372723 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 440437 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 447083 13242506 ~ 13245388 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 121981 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 168062 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 170707 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 181316 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 182590 13881305 ~ 13882012 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 259768 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 330533 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 505581 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1203290 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1676704 12014631 ~ 12015767 (-)
LOC122343280 NA other upstream 116859 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 276642 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 456777 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 989158 14687873 ~ 14704622 (-)
LOC122342642 pfkfb3 other upstream 1109828 14808543 ~ 14810711 (-)

Expression


Co-expression Network