atp6v1e1b (atp6v1e1b,LOC107658907,LOC107583987,LOC107711482,LOC107579815,LOC107725938,LOC108442797)


Basic Information

Item Value
gene id atp6v1e1b
gene name atp6v1e1b,LOC107658907,LOC107583987,LOC107711482,LOC107579815,LOC107725938,LOC108442797
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1658354 ~ 1661399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237841.1
ATCATTGACTGAGAGTCAGCTGATCCTTCTAGTCTATTTTCACGACTCTGCTACGGTCGACCCTTCTTGTCATTTTTGTGCGTTTTTAAATCTGTAGGCTTTTcgcaaatatttcaaaaaatccATTTACTCAGACGTCTTTCCGTCGCCGTGACACGAGCCTTTTCAGCCGGTGGAGTTTAATATCCTcttacagcagcagcagcagtcatGGCGCTCAGTGATGCCGACGTCCAGAAGCAGATCAAGCACATGATGGCTTTCATTGAGCAGGAGGCCAATGAAAAAGCAGAGGAGATCGATGCAAagGCAGAGGAGGAGTTCAACATTGAGAAAGGCCGGCTGGTCCAGACTCAGCGTCTGAAGATTATGGAGTATTATGAGAAGAAGGAGAAACAGATTGAACAgcaaaagaaaatTCAAATGTCCAACCTAATGAACCAGGCCAGACTGAAGGTCCTGAAGGCCCGTGATGACATGATTTCGGATTTGCTAAACGATGCACGTCAGCGACTAGCGAATGTAGCCAGAGATCCATCCAGATATGCGGCTCTGATGGATGGACTTGTCCTGCAGGGTTTTTACCAGCTCCTGGAACCCAAAGTGACCATCCGTTGCCGCAAACAGGATGTGGGCATATTGCAGGCTgctgtgcaaaaaaacattcccATTTACAAGGCCTCAGTGAAGGACAATCTTGAAGTGCGCATTGACCAGGAGAACTTCCTCTCTCCAGAAATctCTGGTGGTATCGAGCTGTATAATGCTGATGGGAAGATCAAAGTGTCTAACACTCTGGAGAGCAGGCTGGACCTCATAGCACAACAGATGATGCCTGAAATCCGCGTCGCTCTATTCGGTGCAAACCAGAACCGCAAGTTTATGGACTAATCCTCACCCGCACAAAACCACGGCAGAACACCATTGTTTGatgttgtacttttatttttattctgatgTTAAAGAATTCATTCCTGTGTttgtctgtatttaaaaaaaatatcatgtgtatgtgtgtgttctgtatatGGTGATTCATTATTGCTGTAAAAAGGATCAAAATAGTGTATTAATTGGCTGCTAAATCTCTGGTCCGTAACATCTCATGTGTTTATTTCTGAGTGCAGCTGTAATATAACATGGTTATGTTTACAGAAATACCTGAGTGAGTTCGGTCTTAAGCTGAAATTCCACGATGGTTTGCGAACTCACCCATTTTGTGGCTGTGGAGGAGAAGACGGACCCATCTTGAACATCCcctagaaaaacaaaatggttGCACAGACTTAAAAATGACAACGTGTTTCATTATTTCTGttgaatttttatttgctgttctTCCTATGGTGCAGAGCATGACCTGTATGTCACAAGCAATCGTGTCTGTTAATGCTGCAAAGATTATATTGATgtggaaattatatataatgaaaaaaacaataccaaACAGATCTTCAA

Function

symbol description
atp6v1e1b Contributes to P-type potassium:proton transporter activity. Acts upstream of or within several processes, including caudal fin development; fin regeneration; and notochord cell vacuolation. Predicted to be part of proton-transporting two-sector ATPase complex, catalytic domain. Is expressed in several structures, including digestive system; eye; gonad; heart; and unfertilized egg. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIC. Orthologous to several human genes including ATP6V1E1 (ATPase H+ transporting V1 subunit E1).

NR:

description
PREDICTED: V-type proton ATPase subunit E 1 isoform X1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237841.1 True 1458 mRNA 0.43 9 1658354 1661399

Neighbor

gene id symbol gene type direction distance location
snap91b si:ch211-214j24.9,LOC107583964,LOC107725923,LOC107658883,LOC107711483,LOC107656397,LOC107579412,LOC108443062 coding upstream 4595 1635177 ~ 1653759 (+)
si:ch211-214j24.15 LOC107658740,LOC107725906,LOC107584035 coding upstream 23747 1629593 ~ 1634607 (+)
LOC122342485 osgep,LOC107656414,LOC107583976,LOC107579596,LOC107658895 coding upstream 33463 1622079 ~ 1624891 (+)
si:dkey-14d8.1 si:dkey-14d8.1,LOC107658880,LOC107725921,LOC107579331,LOC107583961,LOC107656391 coding upstream 49212 1604789 ~ 1609142 (+)
cd9b LOC107658922,LOC107725937,LOC107583958,LOC107656430,LOC107711492 coding upstream 82940 1568264 ~ 1575414 (+)
ada2b cecr1b,LOC107583967,LOC107656410,LOC107711479,LOC107658918,LOC107725927,LOC107581132 coding downstream 151 1661550 ~ 1666145 (+)
ccnd2b ccnd2b,LOC107725932,LOC107658897,LOC107583977,LOC107656417,LOC107710106,LOC107579638 coding downstream 56122 1717521 ~ 1726321 (+)
tmem209 tmem209,LOC107725925,LOC107658886,LOC107583965,LOC107656402,LOC107579462 coding downstream 65384 1726783 ~ 1731685 (+)
ahcyl2b ahcyl2,LOC107725924,LOC107710138,LOC107583963,LOC107658882,LOC107656398,LOC107579442 coding downstream 70756 1732155 ~ 1760369 (+)
strip2 strip2,LOC107725919,LOC107656389,LOC107658739 coding downstream 100744 1762143 ~ 1783683 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding upstream 100576 1556392 ~ 1557778 (+)
G24925 NA non-coding upstream 371281 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 530974 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 725243 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 1006761 649509 ~ 651593 (+)
G25071 NA non-coding downstream 27579 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 127232 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 169279 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 238497 1899896 ~ 1901886 (+)
G25192 NA non-coding downstream 244431 1905830 ~ 1906106 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 326511 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 367130 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 409185 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 992824 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 1219002 434343 ~ 439352 (+)
LOC122343488 NA other downstream 9113 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 122838 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 332841 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1438338 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1458116 3119515 ~ 3306758 (+)

Expression


Co-expression Network