tfec (LOC107584009,LOC107725982,LOC107658865,LOC107710111,LOC107580185,LOC107656331)


Basic Information

Item Value
gene id tfec
gene name LOC107584009,LOC107725982,LOC107658865,LOC107710111,LOC107580185,LOC107656331
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2783461 ~ 2823147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237853.1
TAGCCCTGGAATCAAACGCCACTCCATGCTCAGCTATGATCAAAGGAACACAGGTAAGGCAGCCACAGAGACACATACAATTGGCATCTAAAAAAGTAAGCCGTCTACCCTCACACCCCTCCTTCCCTCCTGCTTTTTTATCTCCTGACTACTCTGACACCGAGAGGAGAAACGTGGAGCACATTGATCAGAATAAAGCAAAGTGATCAGGTTTTGAAGATGTGGGGGGAAGTTTGTTCTCGCCAGAAACTTTTGGACAAAGGGAATTCTGGGATAGAGGTTCAACATGTATGCCAAAGTGTAGAAACTTCCCATTTGCACCCGGTTCAATGGAcgaagaaaaagaggaaatagATAAAGATTTATATTGGATCAAGTCTTGCTGATCTCGCCGGCCAACTGTAAAAGCAGGAGATCAACCAACCGCTGAACTCacagaaaaaaacccctgcGGCCGACTACCACAGGAATCTGCAATGTTCCAGTCATTCTCCACTGTTCAATCGGCCTCTGCGGCTAATGTAGCAAACCAGCATAACCAGTGGGCCCCGGGGCCCTCGTTCTCCTCCTACCACTATTCCTGCAACACAGATTCAAAGCCGGTCCCCTACCACAGCAGTCAGCCCTCCACCTGGCCCTGGACTCGATGGGAGGTTCAAAGTCACCTGGAGAACTCCAAGTACCACCTCCACCAGACTCAGGCCCAGCAGGTCAAGCAGTACCTAACTTTGGGCAGCAAGCTTGCCAGCCAGGCACACCAAGTGGGCCATCCTCACCCGGGCCAGGCCCTGGGAACGGTGCCCGTCATGCGCAACGGACACATGCCGCCCGTGAGCGACAGCAGCACGCCAGGAAGCCCCGTCACCCTGCTCACGCTGGCCAACAATCACGACAGCGAGtttccaATGGATGAAGTTATTGATGATCTTATTAGTCTTGAAACCGGGTTCAAAGATGGAGGTTTGGACTGTATGGAGCCAGGCATCATGATGCAAAATAACGTGTCGCTGAACAACAGCATGCTGGAGGTGTACGGCGGTGACCAAGAACTTGACACCAGAGTCCTGGCCAAAGAACGACAGAAAAAAGACAACCACAATCTAATCGAAAGACGACGGCGATACAACATCAACTACAGGATCAAGGAGCTGGGGACGCTGATACCGAAGTCAAACGACCCTGATATGCGCTGGAACAAAGGGACGATCCTCAAGGCCTCGGTGGAATACATTAAGTGGCTGCAGAAAGAGCAGCAGCACGCCCGTGATCTCGAGAGCCGACAGAAGAAACTAGAACAGGCCAACAGAAGACTCCTGCTACGAATCCAGGAACTGGAAATCCAGGCTCGCGCTCACGGTTTGCCCAGTATGGCTGCTTCTATGGGAGCTGCCGAACTTTCATCCCATCTCttaaagcagcagcagcagcagcaccagGCAGTCACACCGGCCCCGCCGAGCACCCAGGCCCCGCAGCAGCCGGGCCAGCCACCCATCTACACTCAGGAGGACGTGAGTAACCCGGAGTACACCCAGCGGACACCCTTACCGGCGGCGATGGCCGCGGGGAACGCCGGAGAACAGACCGACGGCTCCAACACCTACTCAGATCCTCTCTCCCACTTCACCGACTTCTTCTGCAACACCTTGAAAGAAGAGCACCGGCTGGACGAGATCCTCATGGACGACCCTCTCTCGCCCTTCGGGACAGACCCTCTGCTCTCCGCCGGATCGCCCGCCGCGTCCAAAGGGAGCAGCCGCAGGAGCAGCTTCAGCTCAGAGGAAGCCGACGAGCTCTGACCGTCCAGAAGCTGACCCGTAACACTGTGTAACTGACCTCCCGTTTCCATTGGATTACAAAGACCACGAGAGTCTTACTCCGATGTTGAGTCAGACACATCAAAAAAGGGAGATTGACTATTTGATCTACTGACACCGACCCAAAAGACTGTCTATACAGCAATAACACTGGCTACGTATGATGACTGGctcacaaaatgtatatttctgaaACTTAATGGCATTGTTGAGAGGGACGGCTGTAGAGAGCGCCTTATTCACAACAGACTGACTTTATTACCACTGAGACCAGAAGCAATGCAGTCGCTATTATGCTATGCAAAAAGCCCTAATGCGTCTTTCTATATTtcatacatactgtatttttccaGAAACATACTgttcatgtatttatgttttaatctgtgtattcttaaaaaaacccacaaaaaaactttatctaacatgttactttttatatataactccAGGGGTGTGGGGAAACACAATAAACCCCTTTTTCATAAACTGAA
>XM_043237854.1
TGGCAGAAGGGGGAAGTCTGGGATTGGCCGCTTCACGCAAACAGAACTGGGCGGTCCCAGCGAATTAGCGATATAGGCGAAAGACCTCGGCCCTGTGGTGATCAAACCTGTCAGATCAGTAATCTCTCCACTCGAGGTGATTACTACAACCTGCAATAAAAAGGAAAGGCCTGGCTTTACTGCTAATTAGGTCGCCGAGATCCTCCTGCTTGCTTATAAAGACCGGACAGGGACGAGAGGGGACAGTCACTCGCTTTCCTCTGCACAGCTTGGGATCCCACTTTAGTGGACGTACAGGGATCGAGAATGCCACATTTAACTGACTGTAGTTTCTACAAGATGAGAGACGGAGCTCGAGTTTCCAATGTTCAAAGTCACCTGGAGAACTCCAAGTACCACCTCCACCAGACTCAGGCCCAGCAGGTCAAGCAGTACCTAACTTTGGGCAGCAAGCTTGCCAGCCAGGCACACCAAGTGGGCCATCCTCACCCGGGCCAGGCCCTGGGAACGGTGCCCGTCATGCGCAACGGACACATGCCGCCCGTGAGCGACAGCAGCACGCCAGGAAGCCCCGTCACCCTGCTCACGCTGGCCAACAATCACGACAGCGAGtttccaATGGATGAAGTTATTGATGATCTTATTAGTCTTGAAACCGGGTTCAAAGATGGAGGTTTGGACTGTATGGAGCCAGGCATCATGATGCAAAATAACGTGTCGCTGAACAACAGCATGCTGGAGGTGTACGGCGGTGACCAAGAACTTGACACCAGAGTCCTGGCCAAAGAACGACAGAAAAAAGACAACCACAATCTAATCGAAAGACGACGGCGATACAACATCAACTACAGGATCAAGGAGCTGGGGACGCTGATACCGAAGTCAAACGACCCTGATATGCGCTGGAACAAAGGGACGATCCTCAAGGCCTCGGTGGAATACATTAAGTGGCTGCAGAAAGAGCAGCAGCACGCCCGTGATCTCGAGAGCCGACAGAAGAAACTAGAACAGGCCAACAGAAGACTCCTGCTACGAATCCAGGAACTGGAAATCCAGGCTCGCGCTCACGGTTTGCCCAGTATGGCTGCTTCTATGGGAGCTGCCGAACTTTCATCCCATCTCttaaagcagcagcagcagcagcaccagGCAGTCACACCGGCCCCGCCGAGCACCCAGGCCCCGCAGCAGCCGGGCCAGCCACCCATCTACACTCAGGAGGACGTGAGTAACCCGGAGTACACCCAGCGGACACCCTTACCGGCGGCGATGGCCGCGGGGAACGCCGGAGAACAGACCGACGGCTCCAACACCTACTCAGATCCTCTCTCCCACTTCACCGACTTCTTCTGCAACACCTTGAAAGAAGAGCACCGGCTGGACGAGATCCTCATGGACGACCCTCTCTCGCCCTTCGGGACAGACCCTCTGCTCTCCGCCGGATCGCCCGCCGCGTCCAAAGGGAGCAGCCGCAGGAGCAGCTTCAGCTCAGAGGAAGCCGACGAGCTCTGACCGTCCAGAAGCTGACCCGTAACACTGTGTAACTGACCTCCCGTTTCCATTGGATTACAAAGACCACGAGAGTCTTACTCCGATGTTGAGTCAGACACATCAAAAAAGGGAGATTGACTATTTGATCTACTGACACCGACCCAAAAGACTGTCTATACAGCAATAACACTGGCTACGTATGATGACTGGctcacaaaatgtatatttctgaaACTTAATGGCATTGTTGAGAGGGACGGCTGTAGAGAGCGCCTTATTCACAACAGACTGACTTTATTACCACTGAGACCAGAAGCAATGCAGTCGCTATTATGCTATGCAAAAAGCCCTAATGCGTCTTTCTATATTtcatacatactgtatttttccaGAAACATACTgttcatgtatttatgttttaatctgtgtattcttaaaaaaacccacaaaaaaactttatctaacatgttactttttatatataactccAGGGGTGTGGGGAAACACAATAAACCCCTTTTTCATAAACTGAA
>XM_043237855.1
GTTGCATTCAAACAGGACTGAATGATTCCAGCTTTTCTTGCGGTTTAAAGTGATACCTGAAGGCCTTCTTTTGGACCATGAGCCGCTGCTGTGTGGTTAAAGTCATCTCTTTCACTGAGATTCAACTGCTGCCGGTTCAAAGTCACCTGGAGAACTCCAAGTACCACCTCCACCAGACTCAGGCCCAGCAGGTCAAGCAGTACCTAACTTTGGGCAGCAAGCTTGCCAGCCAGGCACACCAAGTGGGCCATCCTCACCCGGGCCAGGCCCTGGGAACGGTGCCCGTCATGCGCAACGGACACATGCCGCCCGTGAGCGACAGCAGCACGCCAGGAAGCCCCGTCACCCTGCTCACGCTGGCCAACAATCACGACAGCGAGtttccaATGGATGAAGTTATTGATGATCTTATTAGTCTTGAAACCGGGTTCAAAGATGGAGGTTTGGACTGTATGGAGCCAGGCATCATGATGCAAAATAACGTGTCGCTGAACAACAGCATGCTGGAGGTGTACGGCGGTGACCAAGAACTTGACACCAGAGTCCTGGCCAAAGAACGACAGAAAAAAGACAACCACAATCTAATCGAAAGACGACGGCGATACAACATCAACTACAGGATCAAGGAGCTGGGGACGCTGATACCGAAGTCAAACGACCCTGATATGCGCTGGAACAAAGGGACGATCCTCAAGGCCTCGGTGGAATACATTAAGTGGCTGCAGAAAGAGCAGCAGCACGCCCGTGATCTCGAGAGCCGACAGAAGAAACTAGAACAGGCCAACAGAAGACTCCTGCTACGAATCCAGGAACTGGAAATCCAGGCTCGCGCTCACGGTTTGCCCAGTATGGCTGCTTCTATGGGAGCTGCCGAACTTTCATCCCATCTCttaaagcagcagcagcagcagcaccagGCAGTCACACCGGCCCCGCCGAGCACCCAGGCCCCGCAGCAGCCGGGCCAGCCACCCATCTACACTCAGGAGGACGTGAGTAACCCGGAGTACACCCAGCGGACACCCTTACCGGCGGCGATGGCCGCGGGGAACGCCGGAGAACAGACCGACGGCTCCAACACCTACTCAGATCCTCTCTCCCACTTCACCGACTTCTTCTGCAACACCTTGAAAGAAGAGCACCGGCTGGACGAGATCCTCATGGACGACCCTCTCTCGCCCTTCGGGACAGACCCTCTGCTCTCCGCCGGATCGCCCGCCGCGTCCAAAGGGAGCAGCCGCAGGAGCAGCTTCAGCTCAGAGGAAGCCGACGAGCTCTGACCGTCCAGAAGCTGACCCGTAACACTGTGTAACTGACCTCCCGTTTCCATTGGATTACAAAGACCACGAGAGTCTTACTCCGATGTTGAGTCAGACACATCAAAAAAGGGAGATTGACTATTTGATCTACTGACACCGACCCAAAAGACTGTCTATACAGCAATAACACTGGCTACGTATGATGACTGGctcacaaaatgtatatttctgaaACTTAATGGCATTGTTGAGAGGGACGGCTGTAGAGAGCGCCTTATTCACAACAGACTGACTTTATTACCACTGAGACCAGAAGCAATGCAGTCGCTATTATGCTATGCAAAAAGCCCTAATGCGTCTTTCTATATTtcatacatactgtatttttccaGAAACATACTgttcatgtatttatgttttaatctgtgtattcttaaaaaaacccacaaaaaaactttatctaacatgttactttttatatataactccAGGGGTGTGGGGAAACACAATAAACCCCTTTTTCATAAACTGAA
>XM_043237856.1
AAATTATGCAACATCAACACTAGCACAATAGATTACACCTCGCCATTCAAGACACACTTACAAGATGCACACTTACAGTCCAAATTAAGGTTCAAAGTCACCTGGAGAACTCCAAGTACCACCTCCACCAGACTCAGGCCCAGCAGGTCAAGCAGTACCTAACTTTGGGCAGCAAGCTTGCCAGCCAGGCACACCAAGTGGGCCATCCTCACCCGGGCCAGGCCCTGGGAACGGTGCCCGTCATGCGCAACGGACACATGCCGCCCGTGAGCGACAGCAGCACGCCAGGAAGCCCCGTCACCCTGCTCACGCTGGCCAACAATCACGACAGCGAGtttccaATGGATGAAGTTATTGATGATCTTATTAGTCTTGAAACCGGGTTCAAAGATGGAGGTTTGGACTGTATGGAGCCAGGCATCATGATGCAAAATAACGTGTCGCTGAACAACAGCATGCTGGAGGTGTACGGCGGTGACCAAGAACTTGACACCAGAGTCCTGGCCAAAGAACGACAGAAAAAAGACAACCACAATCTAATCGAAAGACGACGGCGATACAACATCAACTACAGGATCAAGGAGCTGGGGACGCTGATACCGAAGTCAAACGACCCTGATATGCGCTGGAACAAAGGGACGATCCTCAAGGCCTCGGTGGAATACATTAAGTGGCTGCAGAAAGAGCAGCAGCACGCCCGTGATCTCGAGAGCCGACAGAAGAAACTAGAACAGGCCAACAGAAGACTCCTGCTACGAATCCAGGAACTGGAAATCCAGGCTCGCGCTCACGGTTTGCCCAGTATGGCTGCTTCTATGGGAGCTGCCGAACTTTCATCCCATCTCttaaagcagcagcagcagcagcaccagGCAGTCACACCGGCCCCGCCGAGCACCCAGGCCCCGCAGCAGCCGGGCCAGCCACCCATCTACACTCAGGAGGACGTGAGTAACCCGGAGTACACCCAGCGGACACCCTTACCGGCGGCGATGGCCGCGGGGAACGCCGGAGAACAGACCGACGGCTCCAACACCTACTCAGATCCTCTCTCCCACTTCACCGACTTCTTCTGCAACACCTTGAAAGAAGAGCACCGGCTGGACGAGATCCTCATGGACGACCCTCTCTCGCCCTTCGGGACAGACCCTCTGCTCTCCGCCGGATCGCCCGCCGCGTCCAAAGGGAGCAGCCGCAGGAGCAGCTTCAGCTCAGAGGAAGCCGACGAGCTCTGACCGTCCAGAAGCTGACCCGTAACACTGTGTAACTGACCTCCCGTTTCCATTGGATTACAAAGACCACGAGAGTCTTACTCCGATGTTGAGTCAGACACATCAAAAAAGGGAGATTGACTATTTGATCTACTGACACCGACCCAAAAGACTGTCTATACAGCAATAACACTGGCTACGTATGATGACTGGctcacaaaatgtatatttctgaaACTTAATGGCATTGTTGAGAGGGACGGCTGTAGAGAGCGCCTTATTCACAACAGACTGACTTTATTACCACTGAGACCAGAAGCAATGCAGTCGCTATTATGCTATGCAAAAAGCCCTAATGCGTCTTTCTATATTtcatacatactgtatttttccaGAAACATACTgttcatgtatttatgttttaatctgtgtattcttaaaaaaacccacaaaaaaactttatctaacatgttactttttatatataactccAGGGGTGTGGGGAAACACAATAAACCCCTTTTTCATAAACTGAA

Function

NR:

description
PREDICTED: transcription factor EC isoform X5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K15591 TFEC; transcription factor EC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237853.1 True 2311 mRNA 0.51 10 2783461 2823147
XM_043237854.1 False 2024 mRNA 0.52 8 2783461 2794368
XM_043237855.1 False 1792 mRNA 0.51 8 2783461 2797146
XM_043237856.1 False 1747 mRNA 0.51 8 2783461 2795817

Neighbor

gene id symbol gene type direction distance location
ppp1r3aa LOC107658872,LOC107584007,LOC107726069 coding downstream 279248 2499774 ~ 2504213 (-)
gpr85 gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006 coding downstream 312189 2467087 ~ 2471272 (-)
tmem168a tmem168a,LOC107658875,LOC107726047,LOC107710117,LOC107656353 coding downstream 359998 2415666 ~ 2423463 (-)
tnnt2e tnnt2e,LOC107658902,LOC107725993,LOC107656364,LOC107710083,LOC108425385 coding downstream 740600 2032823 ~ 2042861 (-)
arl1 arl1,LOC107576237 coding downstream 759252 2022325 ~ 2024209 (-)
lta4h lta4h,LOC107658863,LOC107656327,LOC107744078 coding upstream 12701 2835848 ~ 2845005 (-)
cdk17 cdk17,LOC107658862,LOC107656329 coding upstream 39993 2863140 ~ 2904289 (-)
mcm10 mcm10,LOC107658860,LOC107726070,LOC107743741,LOC107656326 coding upstream 104658 2927805 ~ 2934976 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding upstream 111960 2935107 ~ 2938017 (-)
si:ch211-240l19.8 LOC107658767,LOC107725963 coding upstream 189619 3012766 ~ 3013359 (-)
LOC122343423 NA non-coding downstream 245455 2534205 ~ 2538006 (-)
LOC122343417 NA non-coding downstream 494342 2203585 ~ 2289119 (-)
G25362 NA non-coding downstream 499683 2283285 ~ 2283778 (-)
LOC122343454 NA non-coding downstream 600792 2167305 ~ 2182669 (-)
G25299 LOC108267243 non-coding downstream 619753 2163426 ~ 2163708 (-)
G25625 NA non-coding upstream 157012 2980159 ~ 2996458 (-)
LOC122342459 NA non-coding upstream 293257 3116404 ~ 3117297 (-)
LOC122342458 NA non-coding upstream 294332 3117479 ~ 3119550 (-)
G25673 wnt5b,LOC107656325,LOC103026771,LOC107580320,LOC107744029,LOC107726030 non-coding upstream 557511 3380658 ~ 3676399 (-)
LOC122342758 NA non-coding upstream 579677 3402824 ~ 3403502 (-)
LOC122342907 NA other downstream 310393 2472284 ~ 2473068 (-)
dock4b dock4b,LOC107656358,LOC108425388 other downstream 407745 2299635 ~ 2375716 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other downstream 685660 2091351 ~ 2097801 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other downstream 694882 2042953 ~ 2088579 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other downstream 880798 1898403 ~ 1902663 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other upstream 176735 2999882 ~ 3012214 (-)
LOC122342805 NA other upstream 195945 3019092 ~ 3021512 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other upstream 711515 3534662 ~ 3577123 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other upstream 777853 3601000 ~ 3601991 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other upstream 779209 3602356 ~ 3618367 (-)

Expression


Co-expression Network