lmod2b (lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505)


Basic Information

Item Value
gene id lmod2b
gene name lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1273306 ~ 1277391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237857.1
GCTCTATGTGGTATTTTCGGCACATATGAAAACACTAAAAGCACCTACAAGTTTCCTGGCTTGTCCAATTCTTAACATACGAAATTACTTGAGGATAACATTTATATCAGTAACACTAAATTGTACCTGTAATGTTACAATTTGACACACTGTTGCAAAATCAAGCCGTTCTGTGCAGcgataacatttttattttaacatatgaCACCAGTAAACACAGATATTTGGAGTTTAAGTGCTTGAAAACATAAGTATTTACCACCTTGCTGGAAAAAACTACTTGCTATTATAAGGACATTACCATTTCTCTCTAAGCCATCTCCTCAGAGTCTGTCTGCTTATTTTGGACATGAACAATGCAGTCAGCATTCATTAACAGGCCTCGCTCTGGCCACGTTGTGAGCTCACATGCTTTTTGCAGCTCTGTCTGATTGACTCCTGCCTCCCAAAAAAGCAACGGCATCATGGGCTGGGGCTTTGTACCACGTCTCTCTGATCCTGCTCTTAAGACCCCTCCAGCTGCCCATCGCAGTAGATGAGCACTCACTCTCACTTACACCACTCGAAAGATCCCAGAACTCTATCTGATGCACCAATAGTGAGACAAAACGAAGACTTTAAGACTCTGGAAGACTACCGAGAGGCCATGAGTACATTTGGCTACCGGCGGGAACTGAGTAAGTACGAAGATTTGGATGAAGATGAGCTGTTGGCCTCGCTGACTGCTGAGGAGCTCCAGGAGCTAGAGAAGGAGTTGGCTGATATTGACCCAGACGACAATCTTCCCATCGGACTGCGACAGAGAGATCAGACAGCTAAGACTCCTACTGGAACATTCAGCAGGGAAGCTCTCATGAGATACTGGGAAAATGAGACGCAAAAACTgttggaggaggagaggacgagtCCTAGACAGAAAGATGAAAACAGCAGGGAAGAGGAAGAATGCATGACAGagagtgacactgaagaatttGAGGATGAAAAAGATGAGGATGAAGAgtgtgagaaaaacacagaaaaatgttGTGAAGTTGAAGACCAAGAAGAGGAAAGTGAAACAGAGGAGCCGGTAACAGAAGAGGAGGAggtagaagaagaagaggaagaggaggaggaggaggaggaggaagaagaagaagaagaacggAACAGTCCTAAAATGGCACAGACGCTGGATTGCAGCACTCACCCTCAGAAGTGTTGGTCTTCCAATGGTCAGTCCAATCTGAGACAGGCAGAGCCTGTAAGACGACACTCTCCACTGATGACAGAACCAAAAGTTCAAGCTCAGGAGCCCAGTCGAATGTCAGGAAACCCTACTGTGGTGGATGATGTTCTGGAAAAGATCCTCAACAATGACCCAGATACCACAGAGGTCAACCTCAACAACATTGAAAACATCTCCCAAGACACTCTTATCCGTTTTGCCGAAGCTTTGTGTTCTAACACACATGTACATTTCTTTAGCTTTGCCAACACACATGCAGACGACCAGGTGGCTTTCGCCACTGCCAAGATGCTGAGAGAAAACAGCAACATCACGAATCTTAACATCGAGTCCAACTTTATTACAGGGAAGGGTATCCTGGCACTGGTGCAAGCCCTCACCCGAAACAGTGCCCTTACAGAAATGCGATTTCACAACCAGAGGCACATTTGTGGAGGTCAGGTGGAAATGGAGATTGTTAAGTTACTGAGGGAGAATACAACGCTGATAAAGTTGGGTTACCAGTTCGACCTTCCAGGCCCTCGTATAAGCATGACCACCATTCTTACCCGCAACCAAGACCTCCAGAGACAAAAGAGAATGCAGGAACTGCGTCAACAGCAAGGAGGTGTAGCGACACCAACGAACCCAAGAACGGTCGCCCTTCAGAAGACCGCCTCTTCTCCTTGCGGCTCCCCTCGGAGTTCACCATGGTCATCTCCAAAGTTACCACATATTGATATGGCAAAGAAGAACGCTCTTCCTGCACCTCCccctccaccaccaccacctcctccaccGCCTCCACCACCCAAGGCCTTCATCTCAGAGAAGAAGGCTCCCACCAGAATGATCGCAGAAGTCATCAAACTGCATGAGGGGACATCCAAGAAACAGCAGCATAGGTCCACCAAATCTAAACCCAAGAAGGGCAAAAAAGGGGCTGCAAAGCAAACAGAGACTGACAGCATATTAAAGGAACTGAAGAACGCTCTGAGGCCCATCAATGACAGAGAAAACTCCAGACCATCCACACCTCAACGCTGTGCCCATGATGAACTCATGGCAGCCATCAGAGGCAGCAACATCAAAAATCTCAAAAGGGTGGAGGTTCCCAAGTATCTTCGGTAACCGGGCTTTCCGGATCTCCAGAGCATCATCTGCAAAAAACATCTGGAAATACAGATACTGTGTGCGCTTTCCTCAAAAATCACACCAACCTTCAGAGCAATTCTGGTTAATGCAGGTGTTTGGTGAGTTTGCATTGAATGTTCAAAGACAGCGGCACAACAGTCTAAATGTCCAGTCGATCACAACAGGACCTGTTTTGGGAACGACCTGGATAATTGCACCGTGTTCATTTTTTAGTAATTAGCGGTAGCTCCTGCTGTTGTTGTGATTGtactttcatgttttttcattgttaatgaTTTTTAACACTACTTCATGcctgtataaaatgtaaatatttgatgatttaaaatggattaaattgcattaattcaATAACCGGAGGAAATAA

Function

symbol description
lmod2b Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD2 (leiomodin 2).

NR:

description
PREDICTED: leiomodin-2 isoform X2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237857.1 True 2732 mRNA 0.46 4 1273306 1277391

Neighbor

gene id symbol gene type direction distance location
LOC122342412 NA coding downstream 148182 1122667 ~ 1125124 (-)
LOC122342410 NA coding downstream 152648 1115391 ~ 1120658 (-)
plekha5 plekha5,LOC107656381,LOC107718544,LOC107590532,LOC107658747,LOC107707963,LOC107584023,LOC106609184 coding downstream 498745 643448 ~ 774561 (-)
aebp2 aebp2,LOC107708024,LOC107658952 coding downstream 632581 629065 ~ 640725 (-)
pde3a pde3a,LOC107590531,LOC107656239 coding downstream 692961 500604 ~ 580345 (-)
asb15b asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107581016,LOC107711503 coding upstream 619 1278010 ~ 1281707 (-)
slc13a4 slc13a4,LOC107579393,LOC107656439,LOC107658938,LOC107584028 coding upstream 53631 1331022 ~ 1344030 (-)
gnsa gns,gnsa,LOC107658926,LOC107656403 coding upstream 190806 1468197 ~ 1473225 (-)
ano2b LOC107658923,LOC107726040,LOC107583957,LOC107579307,LOC107656385,LOC107711491 coding upstream 253401 1530792 ~ 1562547 (-)
LOC122342888 LOC107584032,LOC107579834,LOC107656234,LOC107711464,LOC107725908 coding upstream 310888 1588279 ~ 1591305 (-)
G24917 NA non-coding downstream 20727 1250932 ~ 1252579 (-)
LOC122343365 NA non-coding downstream 141271 1130346 ~ 1132035 (-)
G24874 NA non-coding downstream 204407 1068340 ~ 1068899 (-)
G24870 NA non-coding downstream 303955 968474 ~ 969351 (-)
G24863 NA non-coding downstream 315957 953465 ~ 957349 (-)
G24924 NA non-coding upstream 7814 1285205 ~ 1285466 (-)
G24926 NA non-coding upstream 9168 1286559 ~ 1287065 (-)
G24927 NA non-coding upstream 9865 1287256 ~ 1287737 (-)
LOC122342498 si:ch211-258f14.2,LOC107658934,LOC107583952,LOC107726068 non-coding upstream 82645 1360036 ~ 1361863 (-)
G24982 LOC107658928,LOC107726042,LOC107711495,LOC107656419 non-coding upstream 83570 1360961 ~ 1429434 (-)
G24875 NA other downstream 203210 1069160 ~ 1070096 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other downstream 340198 864684 ~ 933108 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other downstream 776438 406642 ~ 496868 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other downstream 931353 279998 ~ 341953 (-)
G24708 NA other downstream 1082064 186460 ~ 191242 (-)
ptprz1b ptprz1,ptprz1b,LOC107725913,LOC107656236,LOC107658935,LOC107581028 other upstream 11923 1289314 ~ 1323397 (-)
LOC122342802 LOC107711465,LOC107656235 other upstream 303089 1580480 ~ 1586189 (-)
selenoo2 selenoo,si:dkey-14d8.2,LOC107579362,LOC107711485 other upstream 316893 1594284 ~ 1604690 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other upstream 331969 1609360 ~ 1618298 (-)
ccdc167 ccdc167 other upstream 376200 1653591 ~ 1654826 (-)

Expression


Co-expression Network