LOC122343428 (lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505)


Basic Information

Item Value
gene id LOC122343428
gene name lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13818 ~ 17904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237891.1
GTATTTTCGGCACATATGAAAACACTAAAAGCACCTACAAGTTTCCTGGCTTGTCCAATTCTTAACATACGAAATTACTTGAGGATAACATTTATATCAGTAACACTAAATTGTACCTGTAATGTTACAATTTGACACACTGTTGCAAAATCAAGCCGTTCTGTGCAGcgataacatttttattttaacatatgaCACCAGTAAACACAGATATTTGGAGTTTAAGTGCTTGAAAACATAAGTATTTACCACCTTGCTGGAAAAAACTACTTGCTATTATAAGGACATTACCATTTCTCTCTAAGCCATCTCCTCAGAGTCTGTCTGCTTATTTTGGACATGAACAATGCAGTCAGCATTCATTAACAGGCCTCGCTCTGGCCACGTTGTGAGCTCACATGCTTTTTGCAGCTCTGTCTGATTGACTCCTGCCTCCCAAAAAAGCAACGGCATCATGGGCTGGGGCTTTGTACCACGTCTCTCTGATCCTGCTCTTAAGACCCCTCCAGCTGCCCATCGCAGTAGATGAGCACTCACTCTCACTTACACCACTCGAAAGATCCCAGAACTCTATCTGATGCACCAATAGTGAGACAAAACGAAGACTTTAAGACTCTGAGAGACTACCGAGAGGCCATGAGTACATTTGGCTACCGGCGGGAACTGAGTAAGTACGAAGATTTGGATGAAGATGAGCTGTTGGCCTCGCTGACTGCTGAGGAGCTCCAGGAGCTAGAGAAGGAGTTGGCTGATATTGACCCAGACGACAATCTTCCCATCGGACTGCGACAGAGAGATCAGACAGCTAAGACTCCTACTGGAACATTCAGCAGGGAAGCTCTCATGAGATACTGGGAAAATGAGACGCAAAAACTgttggaggaggagaggacgagtCCTAGACAGAAAGATGAAAACAGCAGGGAAGAGGAAGAATGCATGACAGagagtgacactgaagaatttGAGGATGAAAAAGATGAGGATGAAGAgtgtgagaaaaacacagaaaaatgttGTGAAGTTGAAGACCAAGAAGAGGAAAGTGAAACAGAGGAGCCGGTAACAGAAGAGGAGGAggtagaagaagaagaggaagaggaggaggaggaggaggaggaagaagaagaagaagaacggAACAGTCCTAAAATGGCACAGACGCTGGATTGCAGCACTCACCCTCAGAAGTGTTGGTCTTCCAATGGTCAGTCCAATCTGAGACAGGCAGAGCCTGTAAGACGACACTCTCCACTGATGACAGAACCAAAAGTTCAAGCTCAGGAGCCCAGTCGAATGTCAGGAAACCCTACTGTGGTGGATGATGTTCTGGAAAAGATCCTCAACAATGACCCAGATACCACAGAGGTCAACCTCAACAACATTGAAAACATCTCCCAAGACACTCTTATCCGTTTTGCCGAAGCTTTGTGTTCTAACACACATGTACATTTCTTTAGCTTTGCCAACACACATGCAGACGACCAGGTGGCTTTCGCCACTGCCAAGATGCTGAGAGAAAACAGCAACATCACGAATCTTAACATCGAGTCCAACTTTATTACAGGGAAGGGTATCCTGGCACTGGTGCAAGCCCTCACCCGAAACAGTGCCCTTACAGAAATGCGATTTCACAACCAGAGGCACATTTGTGGAGGTCAGGTGGAAATGGAGATTGTTAAGTTACTGAGGGAGAATACAACGCTGATAAAGTTGGGTTACCAGTTCGACCTTCCAGGCCCTCGTATAAGCATGACCACCATTCTTACCCGCAACCAAGACCTCCAGAGACAAAAGAGAATGCAGGAACTGCGTCAACAGCAAGGAGGTGTAGCGACACCAACGAACCCAAGAACGGTCGCCCTTCAGAAGACCGCCTCTTCTCCTTGCGGCTCCCCTCGGAGTTCACCATGGTCATCTCCAAAGTTACCACATATTGATATGGCAAAGAAGAACGCTCTTCCTGCACCTCCccctccaccaccaccacctcctccaccGCCTCCACCACCCAAGGCCTTCATCTCAGAGAAGAAGGCTCCCACCAGAATGATCGCAGAAGTCATCAAACTGCATGAGGGGACATCCAAGAAACAGCAGCATAGGTCCACCAAATCTAAACCCAAGAAGGGCAAAAAAGGGGCTGCAAAGCAAACAGAGACTGACAGCATATTAAAGGAACTGAAGAACGCTCTGAGGCCCATCAATGACAGAGAAAACTCCAGACCATCCACACCTCAACGCTGTGCCCATGATGAACTCATGGCAGCCATCAGAGGCAGCAACATCAAAAATCTCAAAAGGGTGGAGGTTCCCAAGTATCTTCGGTAACCGGGCTTTCCGGATCTCCAGAGCATCATCTGCAAAAAACATCTGGAAATACAGATACTGTGTGCGCTTTCCTCAAAAATCACACCAACCTTCAGAGCAATTCTGGTTAATGCAGGTGTTTGGTGAGTTTGCATTGAATGTTCAAAGACAGCGGCACAACAGTCTAAATGTCCAGTCGATCACAACAGGACCTGTTTTGGGAACGACCTGGATAATTGCACCGTGTTCATTTTTTAGTAATTAGCGGTAGCTCCTGCTGTTGTTGTGATTGtactttcatgttttttcattgttaatgaTTTTTAACACTACTTCATGcctgtataaaatgtaaatatttgatgatttaaaatggattaaattgcattaattcaATAACCGGAGGAAATAA

Function

symbol description
lmod2b Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD2 (leiomodin 2).

NR:

description
PREDICTED: leiomodin-2-like

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237891.1 True 2722 mRNA 0.46 3 13818 17904

Neighbor

gene id symbol gene type direction distance location
LOC122343427 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107581016,LOC107711503 coding upstream 700 9542 ~ 13118 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding downstream 69100 87004 ~ 89152 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding downstream 72304 90208 ~ 107305 (+)
glipr1a NA coding downstream 177188 195092 ~ 199536 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding downstream 187601 205505 ~ 213159 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 325688 343592 ~ 360922 (+)
G24558 wasl,LOC107583945 non-coding downstream 6640 24544 ~ 25896 (+)
G24553 NA non-coding downstream 57484 75388 ~ 82523 (+)
G24554 LOC107729149,LOC108279496,LOC107555887,LOC107708007 non-coding downstream 67331 85235 ~ 86588 (+)
G24567 NA non-coding downstream 98295 116199 ~ 116891 (+)
G24586 NA non-coding downstream 198071 215975 ~ 281984 (+)
G24555 cpsf6 other downstream 65784 83688 ~ 84962 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other downstream 166812 184716 ~ 194183 (+)
G24609 NA other downstream 275331 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 355623 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 416439 434343 ~ 439352 (+)

Expression


Co-expression Network