tspan12 (tspan12,LOC107592202,LOC107658802,LOC107656244,LOC107565667,LOC107744106)


Basic Information

Item Value
gene id tspan12
gene name tspan12,LOC107592202,LOC107658802,LOC107656244,LOC107565667,LOC107744106
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4415145 ~ 4429395 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237894.1
CTCTTACATGCACAAGTTAAACACAACACTTGTGGAAAGGCGAGGTGCACACAGCTGGCCCTGACTGGAGTATATAACGCCTGGAATGACAGTGGCAGTGAATGGATCGCAGCGAAAACGCCCGACTGTTGCGCGCAGCTCCGTTAGGAATAGAAGTATGATTTTCGATTGCAGACGCAACTAAGTTTGAGGAGTTTCCTGCAACTTCAATGCTGGACAAAATATAAAGGGATCGTCTGTGTAATGCCTTCCAAACTTTGAGCGTGTTCCTTTTTTGGATACTCCAGGGATTATTATtagcttattattataattatatatggtGTGAAATTGCCGCTGGAGAGAAGAGAGTTGCAACCTGCTCTTTTCAAAATCACGTTGCTTCCTAAACGTCCCACggatattatatttataagagCATTTCAAGACGTTCTGGATGCGCGCTGAACGCGCACGAGGACTTATGACATGCGGTTATGGTGCAGTGGTGGCAGAAGTTAAAATGAGGTCTTTTGGCGAGCAGTTGTTGCGCTCAGAATGGCCCGGGAGGATTCGGTGAAGTGTCTGCGCTGTCTGCTCTACGCGCTCAACTTTCTCTTCTGGCTTATGGCCCTGTGTGTGCTGGGAGTGTCCGCCTGCCTCAGGGATCACCTGAACAATGTGCTCACCTTAACCGCTGACACCAGGCTGGAGGAGGCAGCCGTTCTCACATACTCCCCCGTCGTCCATCCTGTCGTCATCGCCGTGTGCTGTTTTCTAATCATCGTGGCTATGGTGGGCTACTGCGGCACGCTCAAGTGCAATCTGCTCCTACTGTCTTGGTATTTTGGCAGTCTGATGGTGATATTCTGCGTGGAGCTGGCCAGCGGAGTGTGGACGTACGACGAGcCCATGGTACAGAGGTCTGATATGATTAGTCTGAAGTCACGTATGCCTCATTGCTTGCAGCGCTACCAGTGGCTCACACATGCCTGGAACTCTATACAAACAGAGCTGAAGTGTTGTGGAGTGATCTACTTCACTGATTGGCTGGAGATGACAGAGATGGAGTGGCCACCCGACTCCTGCTGCTCCAATCAGTATCCAGGATGTGCCCGCCACGCCCACTACCATGACCTCAGTGACCTTTACCAGGAGGGCTGTGGACCGAAGATCTACAGTTTTATCCGGGGCACTAAACAGCTACAAGTGTTGAGGTTCTTGGGAGTGTCGATCGGCGTGGCTCAGATCTTAGCCATGACGTTGACTGTGACACTTCTATGGGCTCTCTATTACGACCACAAACCACCTGACCCAGCATCCCCCGATGCTTTAATCCACAGCTCTGCAGAAGATGCTCAGAAGCCCAGCCACTCACATCCACGAGCGCCTGAAGCCTGGGCCAACACGCCTGCTAACGGACATACCCAGTTTGAGATGGAGCAGCTTTCCTAGCAGTGACTTCATGGTGACGCATGGGCTACTTCAACACTGCGGACACTGACACTGAATGGATCGAACAGCAGTGAACTGGACCAGAAAATGGACCTTGTGGAATGTGAAGTAGTTCTGGGTGCCTGGATAACAAGATTTAGACGGTTTTATAGAAAACTTTATATACCTGTGGATAAAGTGGCTTTTTTTGTGGTCATCACATGGAAGATGAAGAGGATTTACTGGGTTCTTCCTAAATAAAGCCACTGGCCCTGTCTCTATGGACTTGAATTCTCCAGAGGGAGGTTTCTAGAATGAACTGTTTTCACTTAAATCTTCCTTCCTTCACCACTTACACTGACATAGTTGCAATTTTGCCCACTATTTTGCCACTTAAGACAAGGATTGTAAGAGATATCTTTTATCGTAGTCTGAAATTGGCAATATTTTAACATTCGCTTCACACAATTGACCTCAAGTTTGTTCAGAAAAATTCACCAATTCCTTTTCACCAAGCTACGGCGGACTTCAAACACTCCGACTTGTTTTCTGCGCTTGTGTGGTACTATTTTAACGTATGTTTGAAcgttcaaatgcattttcatttgcgTTCATGGCAATTTTGAAGATATACAGTGTGacaggcaaaacaaaaacagtttgcGTTGGCTTTTCTCAACCCGTTCATATCGTGAAAAGACAGGAAAAATACTGtgcgtatacacacacatacacacacacacacacacacacacacacacacaca

Function

symbol description
tspan12 Predicted to be involved in several processes, including regulation of angiogenesis; regulation of vascular endothelial growth factor signaling pathway; and retina layer formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 5. Orthologous to human TSPAN12 (tetraspanin 12).

NR:

description
PREDICTED: tetraspanin-12-like

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
K17355 TSPAN12; tetraspanin-12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237894.1 True 2179 mRNA 0.47 9 4415145 4429395

Neighbor

gene id symbol gene type direction distance location
tmem243b tmem243b,tmem243,LOC107592214,LOC107744120,LOC107580823,LOC107656297 coding upstream 234828 4176998 ~ 4180317 (+)
meig1 meig1,LOC107592215,LOC107725971,LOC107581293,LOC107658840,LOC107744135 coding upstream 238535 4175425 ~ 4176610 (+)
hspa14 hspa14,LOC107658827,LOC107592213,LOC107580804,LOC107656298 coding upstream 244456 4164737 ~ 4170689 (+)
lsm8 lsm8,LOC107592220,LOC107580766 coding upstream 288338 4125348 ~ 4126807 (+)
kitlgb LOC107725965,LOC107580747,LOC107656304,LOC107658725 coding upstream 293838 4115466 ~ 4121307 (+)
adm2a LOC107592207,LOC107743397,LOC107726065,LOC107580886,LOC107656286 coding downstream 387653 4817048 ~ 4827652 (+)
fbxo18 LOC107743400,LOC107658809,LOC107656287,LOC107581284 coding downstream 403015 4832410 ~ 4840605 (+)
glt8d2 glt8d2 coding downstream 412298 4841693 ~ 4847744 (+)
ttc41 LOC107656216,LOC107743954,LOC107581281 coding downstream 424670 4854065 ~ 4861148 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding downstream 431933 4861328 ~ 4867182 (+)
G25927 NA non-coding upstream 32639 4382175 ~ 4382506 (+)
G25889 NA non-coding upstream 91845 4322906 ~ 4323300 (+)
G25892 NA non-coding upstream 114839 4299667 ~ 4300306 (+)
G25846 NA non-coding upstream 161866 4252949 ~ 4253279 (+)
LOC122342475 NA non-coding upstream 187914 4224583 ~ 4227231 (+)
G25939 NA non-coding downstream 1383 4430778 ~ 4431088 (+)
G25940 NA non-coding downstream 2228 4431623 ~ 4431958 (+)
G25941 NA non-coding downstream 3210 4432605 ~ 4435637 (+)
G25981 flncb,LOC107592205 non-coding downstream 259980 4689375 ~ 4690783 (+)
G25976 LOC107743325,LOC107658806,LOC107580925 non-coding downstream 301442 4730837 ~ 4743603 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 179901 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 184053 4229629 ~ 4231092 (+)
G25551 NA other upstream 676551 3737502 ~ 3738594 (+)
G25514 NA other upstream 913051 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 1108387 3119515 ~ 3306758 (+)
G25958 NA other downstream 120768 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 500076 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 924937 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 1352549 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 1433212 5862607 ~ 5898827 (+)

Expression


Co-expression Network