twf1b (twf1,twf1b,LOC107587151,LOC107582633,LOC107694256,LOC107729862)


Basic Information

Item Value
gene id twf1b
gene name twf1,twf1b,LOC107587151,LOC107582633,LOC107694256,LOC107729862
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7091568 ~ 7099253 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237905.1
GCCACGTAATGGCGTCACATGACAGGCATCTCAAATTGCTGTAGTTCATTCCCCGACTTCCGTGTTCTTTCACTACTACCATCAACCGACCGGCCGACGCGAGAGAGCCAGAATGTCTCACCAAACCGGCATCCAAGCCACCGGGGATGTGAAAGAAATCTTTGCGAAGGCCCGGAATGGAGAATACCGGCTCATCAAAGTAGTGATTGAGAATGAGAAGTTAGTTCTTGGTGGAAGTAAACGGGCTGCCAAGAAGTGGGACCAGGAGTGGGACAGCTGCGTTCTCCCTCTCGTGGAGGATGACATGCCCTCATACCTTCTCTACAGGCTGGATACCACCAACAACCAGGGTTATGAGTGGGTCTTTCTGGCCTGGTCTCCGGATCACTCCCCGGTTCGACAAAAGATGTTGTATGCTGCTACGAGGGCCACTCTGAAGAAGGAGTTTGGTGGTGGCCACATCAAAGAGGAGATTTTCGGCACAGTGAAAGACGATGTCTCTCTAAATGGCTATAAAAAGTACCTTAGCTCCCAGGCGGCGCCTCTGCCTTTGACTGCAGCAGAGGAGGAACTGAGGCAAATCAAACTCAATGAGTTGCAGACAGACATCCATGTGGACACAAAGCAGCAGACTCTTCAGGGAGTGGCGTTCCCTATGCAGAGAGAAGCTATTCAGGCTCTGGAGCAGTTCAGGGAGAAAAGGATCAACTACGTTCAACTGgAAATAGATTTTCCTAAAGAATCCATCAAGTTGTCCAGCACGGCTCCTACGGAGCTGAAAGATTTGCCTAAAAGGATCCCAAATGACGCTGCTAGGTATCACTTTTTCCTCTACAAACACTCACATGAAGGAGACTACCTTGAGTCCACAGTTTTTATCTACTCTATGCCTGGTTATAAATGCAGCATCAAAGAGAGAATGCTGTATTCAAGCTGCAAGAATCCTCTCATAGACACAGTGGAGAAAAACCTGGGCATTGAAATTGCAAAAAAGCTGGAAATTGACAATGGTGATGAACTGACCGGTGACTTCCTGTACGAAGAGGTTCATCCCAAGCAGCATGCGCACAAGCAAGCTTTTGCCAAACCCAAGGGGCCAACCGGGAAGAGGGGGGGCCGGCGAATCACACGGGCGCCCGGGGACGGCGGCGATGACGATTAAACCTCTTCCTGTTCTGAATCCGACAGTGGCACATTCCACTTAGTCTAATGAATCCCGTCCTCGAAGCGAATTTCCATTTTTACCTTGACTCATGTAGACCACAGCCCTATAGACTGATCTATGCACAAAGTCAAACACTAAGCctgtgaaattacattttgtagcTCGCAATATGATATACGCTATATCGAAGAACGTAGACGAGAATGTGTTTTACTAAGCTTCATTTGCCGTCTGCGATGTCCCTGGTAATAGTTTTAACACTATTACGCCGTTTACTTGCATATTAGCCAAGATTATGATATAGAGTGCAATACTGTTGAAATAGACTCTCCATTTAGTGCTTGTCGTCCAGAAACGGATATTGATTTTCAAAcctttttgagaaaaaaaaaagaaaaaaaaagacctggTTTCCCATAAACGGATCTCTAGACAAGGTATAAATTGCACTTTCCGTGGTAGCTTTCCAGCTTTCCATTTTAGCTTAGGAGTAACTTTAATATTTATCCAGGAAAATGGCTGTGGAGATCAGGCGCGATTTATGTTTGGAAAACAACCCGGAAAGTTACACAGTCCACGGGAAGGTCAGAGGTTCACATCTGTTTTATGAGGCCATACGCATTATTAATTAACTTTCCGATCGATTAGGTTGAAAATGTTCTTAACTATGTAAAAGATCAGTATTTTGACAGCCACTGAAGCTTGTAGCGGTAGGGTAGGGATGATTTCAATGAAGGATTTGCCAAGAATATTGTGCTGAAAATGTTccaatacgttttttttaattatgtattaattcttaaaaattggttttgtcttcttttttttttttttttttaaatgtaagattGTTTAATAATAGGCATATGATAATAGAATCCGTCATAACACACAGATCTGAAGAAGTGATGCTGCTCTGCATCTTAAGATATTTTTCACGTTCTTCAAGTGAAGACTAAACCCGCAGAGATACTATTTTTCTAAGCCTGTACAGCTGTTCGTCCAGATGATGTTGTTGTCTAACATCTTGAAGTGAGCGTCTATGGTTTCAGGGGTTTAGGGCCGTCCTGTCTGCCTGACTGAATGTTTTACATGTCATCCAACGGCCAGCTTGCATTTCACGCCATTTGCAACCGCACTAACATACAAGTGCTTGAAGTTAAGTTCACTCAGCATCTCACCCGGGATGCTTTTGAAAGGGAAGGAACTATGCCAGAACCTCTGAGACGATCCCTCTACTGAATCACAACAGGCAAACCACTATTAACATGTCGGGTATTATGAAGTCTGGAAAGGAATCATTAAGtcttaaatgtctttttctatGCATTGTATAAGATAGAGGAATAgaggaaagaaaagaataaaaagatttgaaaattC

Function

symbol description
twf1b Predicted to enable actin filament binding activity and actin monomer binding activity. Predicted to be involved in actin filament depolymerization; negative regulation of actin filament polymerization; and regulation of plasma membrane bounded cell projection organization. Predicted to act upstream of or within negative regulation of actin filament polymerization. Predicted to be located in cytoskeleton. Predicted to be active in actin filament and myofibril. Is expressed in gut and nervous system. Orthologous to human TWF1 (twinfilin actin binding protein 1).
twf1 Enables ATP binding activity and actin binding activity. Involved in regulation of actin phosphorylation. Located in cytosol and nucleolus.

NR:

description
PREDICTED: twinfilin-1-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K08870 TWF; twinfilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237905.1 True 2548 mRNA 0.43 9 7091568 7099253

Neighbor

gene id symbol gene type direction distance location
pus7l pus7l,LOC107694257,LOC107729857,LOC107591455,LOC107729827 coding downstream 526 7085314 ~ 7091042 (-)
prickle1b prickle1,LOC107725650,LOC107587146,LOC107694259,LOC107729853 coding downstream 98670 6970547 ~ 6992898 (-)
zcrb1 zcrb1 coding downstream 136928 6951892 ~ 6954640 (-)
yaf2 yaf2,LOC108439407,LOC105018284,LOC107725590 coding downstream 140671 6940446 ~ 6950897 (-)
gxylt1b gxylt1,LOC107729836,LOC107582079,LOC107694260 coding downstream 151272 6934093 ~ 6940296 (-)
nell2b nell2b,nell2,LOC107587152,LOC107725667,LOC107729859,LOC107694255,LOC107582716 coding upstream 20617 7119870 ~ 7157914 (-)
LOC122342649 plxnb2a,LOC107725571,LOC107587155,LOC107655568,LOC107729840,LOC107583013,LOC107690660 coding upstream 126256 7225509 ~ 7318055 (-)
akr1b1.2 si:dkey-180p18.9,LOC107587162,LOC107676933,LOC107725652,LOC107690495,LOC107729832,LOC107098428 coding upstream 361861 7461114 ~ 7469813 (-)
prdm4 prdm4,LOC107729841,LOC107690481 coding upstream 370666 7469919 ~ 7477407 (-)
slc26a5 slc26a5,LOC107725620,LOC107676926,LOC107690535,LOC107729842 coding upstream 382096 7481349 ~ 7494492 (-)
G26799 NA non-coding downstream 135193 6883901 ~ 6956375 (-)
G26790 LOC107725579,LOC107587145 non-coding downstream 183073 6845559 ~ 6908495 (-)
G26796 NA non-coding downstream 228186 6862723 ~ 6863382 (-)
G26795 cntn1b,cntn1,LOC107581848,LOC107757284,LOC107694230,LOC107725506 non-coding downstream 229321 6860074 ~ 6862247 (-)
G26787 LOC107725579,LOC107655582 non-coding downstream 247719 6841974 ~ 6843849 (-)
LOC122343305 NA non-coding upstream 67553 7166806 ~ 7189549 (-)
G26832 NA non-coding upstream 220249 7319502 ~ 7319725 (-)
G26846 NA non-coding upstream 273920 7373173 ~ 7373595 (-)
LOC122343472 NA non-coding upstream 300413 7399666 ~ 7456641 (-)
G26956 NA non-coding upstream 755496 7854749 ~ 7856511 (-)
il22 NA other downstream 350827 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 730084 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 838920 6085892 ~ 6252648 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other downstream 1151553 5938055 ~ 5940015 (-)
G26462 NA other downstream 1178030 5906755 ~ 5913538 (-)
si:dkey-261e22.4 NA other upstream 115081 7214334 ~ 7220911 (-)
G26951 NA other upstream 455862 7555115 ~ 7558453 (-)
LOC122343432 NA other upstream 1148658 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 1361253 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 1414377 8513630 ~ 8517583 (-)

Expression


Co-expression Network