LOC122343440


Basic Information

Item Value
gene id LOC122343440
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9324900 ~ 9333048 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237906.1
ATTTTAGAAATCAAAATGTCTCTGTTGTTGCTGAAACTCCACCCTCATCTCACAGCGCTACTTCACATCCACCCACTACACCCTTATACTCATCTGAGCGCAGCTGATCTCTGTGACAAGATCTCCAGCAGGCCTATGCAACTGCTCATTAAGATGGGAAGATACTTACTTGGAATACTTGTACTTATGAAATACTGCATTTGCGGTGACGTGGTGAACTTTGATGGAGACATTAAGGACTTTGTAGTCGCTAACAGTAAGTTATTTGTTCTTACTGAACATCGACTGCATCAGATGAGACACGATCTATATGAGGAGAAGAGCAAAGACATCACTGACGTCCCTCAGAATAACAGAGTCAACATTCTGGTGCCTTTTGATGAGAACCGCACCCTGATAACGTGTGGGACTTTTAAAGAGGGACATTGTGAAGTTCTTGATATAAATGACATTacgaacagtatttattatgaaaatggtGTACCGCTAAAGTcacaacagaagaaaattgTTGCCTTCATAGCCGGTAGATTCCTTTTggttggaaaaaaagaagacaacGCAAAAGACAGGTATTCTGTTGTTAGTTTGGTGAACACTTTACAGACTCAATCAGGTGGGATTTTCTCAATATCAGCAGATGGATCAGAGGCCATCATTCAGAGCACAGTGAGAGATGTGGAGTTTGTTGATGGATTTCAGAGAGTTTCTTCCTCAGAATCCTATTTGTTTCTCAACGCAGAGACTGACTCTGGAAGGAAAGTGATTGTCTTGTGGATGAACAGCTCTGAAGTAAAAAAGATAGACATAATCAAATCTCTCCGGTCTTCAACGATACGATGCTGCAGTGATAAAACTCGTCCAGTGCTCGTCGCCTCCACCGTTATTCCCTCAGAGACTGATGTTATTTGGGCAGGTGTGTTCAGTTCACAGGATCAGCAGGATCCGGAGAACAGCGCTCTGGCTCTGTACGACATCAGTAAAGTTCAAGGCACAGTGAAGGGCTTCTGTGCTAATGGTGAAAAACCTTGTGGATCTGAGagtgGCAGTGAACTTCAGCCTCTCTCTGTGGTGTTTAAGTACAGCTCAATGTCAGCAGTGACAGCAATGAGAGCTGGATCCTGGACTGTGCTGTTCATAGGAACCAGTGATGGACAACTCATCAGGctgATGTTGGATGAGAGATTCACGCCAGGCTGTCCAACAGTGCTGTTCAAATCTGATGACGAACGAGCAGTGCTTCCCAGAATGCACTTTGATCCAGTAGATTTCAAACATGTCTACATCGCTCTGAGGAAACAGTTAAGAAGAGTGTCTATGGTTAAGTGTGCTAAATACAGCAATCTGAGAAAGTGCAGCGCTGCTCCGGATCCTCTCTGCGGCTGGTGTGTGAAAACACAGAGATGCTCCACCCAAGACGAATGTTCAAAATCTTCATGGGTGTTCACCCCAAAAGACTCCCTTCAGAAactgctgttttcttttcaggTTTGGGCAGAGAAATCTTCCGGCAagATTACTCTACATCTTTCCTTGCGTCTGGAGAGCACAGAAAACCCCACCTTCTCATGCACCTTCACCACGGGAAGTGGTAACCTGTGTGGCAAGTCTGATCTGGACGCAGTTTTCCCAAACTGCTACTGTAGTTTTTCTGACCAGCTGCTATCTACTGGAGGTTTAAAGATCTCAGCTGAAGTGGCTGTTGGGGGTCAGAAAATCACAGAGAAGCTGGTGCTGAAAAACTGCCTGGATATCAAAGATAATTTGCCAAGTGCTTCTTATATACAGTGTGTTCAGTGTGTCTCATCTGGGTGTCACTGGTCCTCTTCCTCTCAGCGTTGTGATTGGACACACGGACCTGGAGCACAGTTAAACATACAGGATTCGTGTAATAATGTGCTCTATGAGATGAAATATGAAGAACCAGAGATTTTCTCCCTGGAGCCCAACAAGGTTTCTTTCCATGGCAGAAACAATGTTTCACTAAAAGGAAGATATCTGGGATCTGTTACTAAAATCCGTATTCAAGGGGATCTAGAGTGCATTCCTAAAGAATCTCCGGTGTTTGATCGCTCCAGTGATACTTTAAGGTTCCACATTCCTCCCAGCGGAACTAAAGGAACAGTGAAAGTGTGTGTTGTTACTCCTGACGACCGTTGTCATGGTAACAGCATCATCACTTACACTTCTCAGCCCAGCTGCACTGGAATACAGCCCCCGGTCACCTGGAGGAGTGGTGGAAGAAAGATTCACATTATGGGAAGCAATCTGGAATTTGTGGAATCACTTACTTTCAATTCCAGTTATGCACAGTATTACTTTGAAACAAACTACAATGCAAGCTCGGGGgaCATGTGGTTTTACTCCCCtgattactattattatcattgttatgATGGTTTTACTTTAAGTTTAATTGTTGGGAACACCACTGTGGACTGTGTGGGTGATTTGTCCTTCATGTTTGATCCAGAATTTACTGGATTCACCACCTTACAGGTGGCCGATGATCTGCAGGTGAACATTAAGAAAAAGACAGATGAGCTGAATTTGAGTATGACCGAGGTGACTGTGACGGGTCTACAGGGAGATCAGCAGTATCAGTGTGTTCTGGATAGGATTGAGTCCAATGCTGTTATCTGTAAGATTAAAGGAGAATCAGGAGCCGTCCCAACACTGGACTCACTCACTATCCGTGTTGGGGATTATAACACTTTCCAAAGTCAAGAAAGACCAgcgtttttgcttttttttgccttggcattttctttcatattcttattgttttttcttatcttttgcattttattatttatttttcggGTTTAACGTAATATCTTATCTGTTCTCCAGACAGCAGGTGGCGCAATATACTTACATATTCTGTAATATGCTGCAAAAACATAGCCGTTCAAAGTTCTTACAGAGATATAGTCTGGTAGTTATCActgtattacaattatttttgcattagaaGGCTTTTGATCTCATTGTTCTCTTATTAACCTAATGTTT
>XM_043237907.1
ATTTTAGAAATCAAAATGTCTCTGTTGTTGCTGAAACTCCACCCTCATCTCACAGCGCTACTTCACATCCACCCACTACACCCTTATACTCATCTGAGCGCAGCTGATCTCTGTGACAAGATCTCCAGCAGGCCTATGCAACTGCTCATTAAGATGGGAAGATACTTACTTGGAATACTTGTACTTATGAAATACTGCATTTGCGGTGACGTGGTGAACTTTGATGGAGACATTAAGGACTTTGTAGTCGCTAACAGTAAGTTATTTGTTCTTACTGAACATCGACTGCATCAGATGAGACACGATCTATATGAGGAGAAGAGCAAAGACATCACTGACGTCCCTCAGAATAACAGAGTCAACATTCTGGTGCCTTTTGATGAGAACCGCACCCTGATAACGTGTGGGACTTTTAAAGAGGGACATTGTGAAGTTCTTGATATAAATGACATTacgaacagtatttattatgaaaatggtGTACCGCTAAAGTcacaacagaagaaaattgTTGCCTTCATAGCCGGTAGATTCCTTTTggttggaaaaaaagaagacaacGCAAAAGACAGGTATTCTGTTGTTAGTTTGGTGAACACTTTACAGACTCAATCAGGTGGGATTTTCTCAATATCAGCAGATGGATCAGAGGCCATCATTCAGAGCACAGTGAGAGATGTGGAGTTTGTTGATGGATTTCAGAGAGTTTCTTCCTCAGAATCCTATTTGTTTCTCAACGCAGAGACTGACTCTGGAAGGAAAGTGATTGTCTTGTGGATGAACAGCTCTGAAGTAAAAAAGATAGACATAATCAAATCTCTCCGGTCTTCAACGATACGATGCTGCAGTGATAAAACTCGTCCAGTGCTCGTCGCCTCCACCGTTATTCCCTCAGAGACTGATGTTATTTGGGCAGGTGTGTTCAGTTCACAGGATCAGCAGGATCCGGAGAACAGCGCTCTGGCTCTGTACGACATCAGTAAAGTTCAAGGCACAGTGAAGGGCTTCTGTGCTAATGGTGAAAAACCTTGTGGATCTGAGagtgGCAGTGAACTTCAGCCTCTCTCTGTGGTGTTTAAGTACAGCTCAATGTCAGCAGTGACAGCAATGAGAGCTGGATCCTGGACTGTGCTGTTCATAGGAACCAGTGATGGACAACTCATCAGGctgATGTTGGATGAGAGATTCACGCCAGGCTGTCCAACAGTGCTGTTCAAATCTGATGACGAACGAGCAGTGCTTCCCAGAATGCACTTTGATCCAGTAGATTTCAAACATGTCTACATCGCTCTGAGGAAACAGTTAAGAAGAGTGTCTATGGTTAAGTGTGCTAAATACAGCAATCTGAGAAAGTGCAGCGCTGCTCCGGATCCTCTCTGCGGCTGGTGTGTGAAAACACAGAGATGCTCCACCCAAGACGAATGTTCAAAATCTTCATGGGTGTTCACCCCAAAAGACTCCCTTCAGAAactgctgttttcttttcaggTTTGGGCAGAGAAATCTTCCGGCAagATTACTCTACATCTTTCCTTGCGTCTGGAGAGCACAGAAAACCCCACCTTCTCATGCACCTTCACCACGGGAAGTGGTAACCTGTGTGGCAAGTCTGATCTGGACGCAGTTTTCCCAAACTGCTACTGTAGTTTTTCTGACCAGCTGCTATCTACTGGAGGTTTAAAGATCTCAGCTGAAGTGGCTGTTGGGGGTCAGAAAATCACAGAGAAGCTGGTGCTGAAAAACTGCCTGGATATCAAAGATAATTTGCCAAGTGCTTCTTATATACAGTGTGTTCAGTGTGTCTCATCTGGGTGTCACTGGTCCTCTTCCTCTCAGCGTTGTGATTGGACACACGGACCTGGAGCACAGTTAAACATACAGGATTCGTGTAATAATGTGCTCTATGAGATGAAATATGAAGAACCAGAGATTTTCTCCCTGGAGCCCAACAAGGTTTCTTTCCATGGCAGAAACAATGTTTCACTAAAAGGAAGATATCTGGGATCTGTTACTAAAATCCGTATTCAAGGGGATCTAGAGTGCATTCCTAAAGAATCTCCGGTGTTTGATCGCTCCAGTGATACTTTAAGGTTCCACATTCCTCCCAGCGGAACTAAAGGAACAGTGAAAGTGTGTGTTGTTACTCCTGACGACCGTTGTCATGGTAACAGCATCATCACTTACACTTCTCAGCCCAGCTGCACTGGAATACAGCCCCCGGTCACCTGGAGGAGTGGTGGAAGAAAGATTCACATTATGGGAAGCAATCTGGAATTTGTGGAATCACTTACTTTCAATTCCAGTTATGCACAGTATTACTTTGAAACAAACTACAATGCAAGCTCGGGGAATTTACTGGATTCACCACCTTACAGGTGGCCGATGATCTGCAGGTGAACATTAAG

Function

GO: NA

KEGG:

id description
ko04142 Lysosome
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237906.1 True 3015 mRNA 0.43 15 9324900 9333048
XM_043237907.1 False 2405 mRNA 0.44 13 9324900 9332251

Neighbor

gene id symbol gene type direction distance location
LOC122343441 LOC107553872,LOC107593900 coding upstream 1278 9317580 ~ 9323622 (+)
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 283044 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 309644 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 354306 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 363667 8953947 ~ 8961233 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 22919 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 212637 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 223781 9556829 ~ 9576961 (+)
bik NA coding downstream 248521 9581569 ~ 9584512 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding downstream 308200 9641248 ~ 9654380 (+)
LOC122343257 NA non-coding upstream 225922 9088755 ~ 9098978 (+)
LOC122342713 NA non-coding upstream 243034 9078018 ~ 9081866 (+)
G27352 NA non-coding upstream 248764 9068931 ~ 9076136 (+)
G27347 LOC107590965,LOC107695883 non-coding upstream 266608 9057868 ~ 9058292 (+)
G27345 NA non-coding upstream 267603 9054021 ~ 9057297 (+)
LOC122343448 NA non-coding downstream 14179 9347227 ~ 9351206 (+)
G27397 NA non-coding downstream 23318 9356366 ~ 9356870 (+)
G27404 NA non-coding downstream 152245 9485293 ~ 9485655 (+)
G27405 NA non-coding downstream 154313 9487361 ~ 9487576 (+)
G27406 NA non-coding downstream 156022 9489070 ~ 9489692 (+)
G27360 anks1b other upstream 97688 9163147 ~ 9227212 (+)
apaf1 apaf1,LOC107744928 other upstream 103854 9038638 ~ 9221046 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 306567 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 434724 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 776898 8533816 ~ 8548002 (+)
cfap54 cfap54,LOC107695893 other downstream 48494 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 171032 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 244267 9577315 ~ 9578574 (+)
G27490 NA other downstream 254271 9587319 ~ 9590318 (+)
G27629 NA other downstream 825111 10158159 ~ 10257553 (+)

Expression


Co-expression Network