LOC122343441 (LOC107553872,LOC107593900)


Basic Information

Item Value
gene id LOC122343441
gene name LOC107553872,LOC107593900
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9317580 ~ 9323622 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237909.1
GACGCCTCTGAGCTCAGTTGATCAAATCTTCAGCTGCTCATCACATACCTAAGATGAGTGGATATTTTGTTGGAATACTTGTACTTATGAAATACTGCATTTGCGGTGACGTGGTGAACTTTGATGGAGACATTAAGGACTTTGTAGTCGCTAACAGTAAGTTATTTGTTCTTACTGAACATCGACTGCATCAGATGAGACACGATCTATACGAGGAGAAGAGCAAAGACATCACTGACGTCCCTCAGAATAACAGAGTCAACATTCTGGTGCCTTTTGATGAGAACCGCACCCTGATAACGTGTGGGACTTTTAAAGAGGGACATTGTGAAGTTCTTGATATAAATGACATTACGAACAGTATTTACAATGAAAACGGTGTACTGCTAAAGTcacaacagaagaaaattgTTGCCTTCATAGCCGGTAGATTCCTTTTggttggaaaaaaagaagacaaagcaAAAGACAGGTATTCTGTTGTTAGTTTGGTGAACACTTTACAGACTCAGTCAGGTGGGATTTTCTCAATATCAGCAGATGGATCAGACGCCATCATTCAGAGCACAGTGAGAGATGTGGAGTTTGTTGATGGATTTCAGAGAGTTTCTTCCTCAGAATCCTATTTGTTTCTCAACGCAGAGACTGACTCTGAGAGGAAAGTGATTGTCTTGTGGATGAACAGCTCTGAAGTAAAAAAGATAGACATAATCAAATCTCTCCGGTCTTCAACGATACGATGCTGCAGTGATAAAACTCGTCCAGTGCTCGTCGCCTCCACCGTTATTCCCTCAGAGACTGATGTTATTTGGGCAGGTGTGTTCAGTTCACAGGATCAGCAGGATCCGGAGAACAGCGCTCTGGCTCTGTACGACATCAGTAAAGTTCAAGGCAGAGTGAAGGGCTTCTGTGCTAATGGTGAAAAACCTTGTGGATCTGAGagtgGCAGTGAACTTCATCCTCTCTCTGTGGTGTTTAAGTACAGCTCAATGTCAGCAGTGACAGCAATGAGAGCTGGATCCTGGACTGTGCTGTTCATAGGAACCAGTGATGGACAACTCATCAGGCTTGTTTTAGATGAGAGATTCACGCCAGGCTGTCCAACAGTGCTGTTCAAATCTGATGATGAACGAGCAGTGCTTCCCAGAATGCACCTTGATCCAGTAGATTTCAAACATGTCTACATCGCTCTGAGGGAACAGTTAAGAAGAGTGTCTATCATTCAGTGTTATAAACACATCACTCTGAAAGACTGCAGAGCTGCTCTGGATCCTCTCTGCGGCTGGTGTCTGAACAAACACAGATGTTCCGCTCAAGATGAATGCTCAAATACTTCTTGGGTTTCCATCTCAAAAAACTCTCTTCAGACAaagctgtttctttttcagatgtCAGAGAATTCTTCTAGAAAGATTACTCTGCATCTTTCCTTGAGTCTGGAGAGCGCAGGAGACCCTACTCTCTCGTGCTCCTTCACTAAAGAGAGTGTAAGCCTGTGTGATGGGTCTGATCTATCTGCAAGTTTCCCAAACTGCTCTTGTAGTTTTTCTGACCAGAAACTCTATTCTGGAGGTTTAAAGGTCTCTGCTTCAGTTACTATCGAGGATCAGAAGATCACAGAGACGCTGACGCTGAGAAACTGCTCCAGCATCACAGATCATTCGCCAAATGTTTCTTATACACAGTGTGTTCAGTGTGTCTCATCTGGGTGTCTCTGGTCCTCTTCCTCTCAGCGTTGTGATTGGACACACGGACCTGGAGCACAGTTAAACATACAGGATGCCTGTAAACATCTACTCTCTGAGATGAAGCCGGAGATTCTCTCGCTGGAGCCGAAAAAGGCTTCTTTACATGGAAGAAACAATGTCTTATTAAGAGGAAGAAATCTGGGATCTGTTACTAAAATCCGTATTCAAGGGGATCTAGAGTGCATTCCTAAAGAATCTCCGGTGTTTGATCGCTCCAGTGATACTTTAAGGTTCCACATTCCTCCCAGTGGAACTAAAGGAACAGTGAAAGTGTGTGTTGTTACTCCTGACGACCGTTGTCATGGTAACAGCATCATCACTTACACTTCTCAGCCCAGCTGCACTGGAATACAGCCCCCGGTCAGCTGGAGCAGTGGTGGAAGGAAGGTTCATGTTCAGGGCAGCAATCTGGAATTAGTGGAGTCGGTTACTGTCCTTCCCTTTAATAAAGTGCTGAAAACACAGTACAGCACAAGCTCAGGGGACGTGTGGTTTCACTCTCACCCTTATGATGGCGAGGGTCAGATTAGACTGCTGTTAAATGTTCAGAACTCAGCTGTGGACTGTGTGGGTTATTTCTCCTACAAGCCGGATCCAAAATTCACTGAATTTACCACCTCACAGATAGCCAACCATCTACAGGTGAAAATTCAGAAAAGGACAGATGAGCTGAATTTGAGTATGGCCGAGGTGACTGTGACGGGTCTACAGGGAGATCAGCAGTATCAGTGTGTTCTGGAGAAGATTGAGTCCAATGCTGTTATCTGTAAGATTAAAGGAGAATCAGGAGCCGTCCCAACACTGGACTCACTCACTATCACGATTGGGAATTATGTTCTAGGGATGAGTAGTACAAAGCATCAGTTCTGCCTCAGTCCACAGAATATAGCCGCTCATGTATGGAGCAGCAATGGAAACATAAACGATTCTCAGCATcttccagaaaaaaaagacagactgTAAAACTATTGTTTTCTATTCCATAGAGAGGTGTAAAAAAGTTTAGGTCTTTATGCAATCATATATTTGGGCACATTTATAGCAGTTCAGCTTTAATCAACacaatatgttttatgttatgttcTCTAACTATTGTCAAAGATTTGGGTTGTAATTTTTCTCACTGTACACCTAAACAATTGTATTTTGCTGAACTGTTCAGTATTTAGTGTTATTGCAGTATGTTTGTAAAACGTGAAGAAATTTTAATAgtgtattaaatgcaaaataacccAAGGGTCCTATATAAATATTCTTTATGCaacataaaatattctttatagtatttattcttCTGATTTTGGTGTAAAATATGACCCTggtatgtttgttttatgagATTCACCCTACACCTACAGTTTTCATAACAGATAAAACATCATAGCACTGACTAAAGAGACCACAGGAAGTACAAACTATTTACaggtctctgtctttctctacT

Function

NR:

description
PREDICTED: plexin-C1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237909.1 True 3192 mRNA 0.42 15 9317580 9323622

Neighbor

gene id symbol gene type direction distance location
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 275724 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 302324 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 346986 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 356347 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 451662 8855404 ~ 8865918 (+)
LOC122343440 NA coding downstream 1278 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 32345 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 222063 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 233207 9556829 ~ 9576961 (+)
bik NA coding downstream 257947 9581569 ~ 9584512 (+)
LOC122343257 NA non-coding upstream 218602 9088755 ~ 9098978 (+)
LOC122342713 NA non-coding upstream 235714 9078018 ~ 9081866 (+)
G27352 NA non-coding upstream 241444 9068931 ~ 9076136 (+)
G27347 LOC107590965,LOC107695883 non-coding upstream 259288 9057868 ~ 9058292 (+)
G27345 NA non-coding upstream 260283 9054021 ~ 9057297 (+)
LOC122343448 NA non-coding downstream 23605 9347227 ~ 9351206 (+)
G27397 NA non-coding downstream 32744 9356366 ~ 9356870 (+)
G27404 NA non-coding downstream 161671 9485293 ~ 9485655 (+)
G27405 NA non-coding downstream 163739 9487361 ~ 9487576 (+)
G27406 NA non-coding downstream 165448 9489070 ~ 9489692 (+)
G27360 anks1b other upstream 90368 9163147 ~ 9227212 (+)
apaf1 apaf1,LOC107744928 other upstream 96534 9038638 ~ 9221046 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 299247 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 427404 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 769578 8533816 ~ 8548002 (+)
cfap54 cfap54,LOC107695893 other downstream 57920 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 180458 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 253693 9577315 ~ 9578574 (+)
G27490 NA other downstream 263697 9587319 ~ 9590318 (+)
G27629 NA other downstream 834537 10158159 ~ 10257553 (+)

Expression


Co-expression Network