LOC122343453 (LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105)


Basic Information

Item Value
gene id LOC122343453
gene name LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2178532 ~ 2189748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237923.1
AGACAGCGGCATGTCAATGTGACAACCGAGCGAGCGGCTGCAGATGCGCCTCTGAACGCGGAGGAAGAAGGAGGTTGTCAGTGCGAGGGACTCTAAAAAGCTCCCAGACGGCTCTCACCTGGTGGACTTCGCCTCGTTCGTACGGCAAAATCTCAACGTTAGGAGCGCGAGCCGCCGCTGCTCCCCTGTCTGCGTTGGAAGAAGACCACGCGCGCTTATTTTCATTTGCGTGGCGCGAGCTTTCCGCTCTCTGGAGCACTGCGCTATAGATGAACGGAATACATGTCGCCTTATCGACCGGAATGACTTACGCTGAAACGGTAGAAGTGGATTAGGCTGATGATGGCACCATCAATGAAATGAACGATCTTGCTTCTGCCTAGCTGAAACCACAGCTACCTGAGGTTTAATGGTGACCTTTTTACCTTTATCTGCCCAACTAGTAAAATTCCCTACACCACCTTCAATCTGAATTACGGGAGACTTGGCGACGGGACATTGCATCTGTTGACAGCACATCAGTCAGGGCCTAGGGAAGGCCCTCAAGTGAGGATTCAAGTGATCACCACAAATGGTTGATTATTTTTGAAGTGAAGTGCTTTTGCCACAAAATCTTTAAGGACCAACTACTTACTGGTGGGAACCGTGCCAATATGAAGGACATATCATTTGCGGATTATTTGCTAGTGGGTCTTGCAGTGACTACCTTGGTTCTTGCTGCAGAAGAGAGAGTCAGTTGTCCCAAACTTTGCGTATGTGAGATTAGACCCTGGTTTTCCCCTAGCTCTGTCTATATGGAGGCTCCCACTGTTGACTGTAATGACCTTGGACTTTTTGACCTGCCCATGAGATTGCCATCTGATACACAAGTTGTTTTACTGCAAACCAACAACATTGGTAAGATTGAGCACCCTGGATTGGATTACCTGCCAAACATCACTGAGATTGATCTCTCCCAAAACAACCTGTCATCAATAAGTGATGTCAATATTGGACACCTCCCTCAACTCTTATCCCTACACATGGAGGAAAACTGGATATGTGCCCTACCAGACAACAGCCTTTCTCAATTGGCCAACCTTCAGGAGCTCTATCTAAATCATAACCTCATCTCCTTCATTTCCCCTGAGGCTTTTCGTGGTCTTCAGAGCTTGCTGAGACTTCACCTCAATTCCAACCGGCTTCAAAGTATAAAAAGCGAATGGTTTGAGCCCTTACCGAATTTGGAAATTCTAATGATTGGGGAAAATCCTGTCCTCTCTATTCAGGATATGAACTTCAAGCCTCTGAGAAATCTACGCAGCCTGGTTCTTACTAGAATGAACCTATCACAGATACCAGATGATTCACTTCTGGGCCTTGACAATTTGGAGAGCATCTCATTTTATGATAATACATTCCCTAAGGTACCCCACGGAGCTCTCAGGCATCTGAAGAGCCTCAAGTTTTTGGATCTTAATAAGAACCCCATTGGGCGAATTCAAAGGGGTGACTTTGTGGACATGCTCCATCTTAAGGAGCTGGGCATTAACAGCATGCCCGAGTTGGTGTCCATTGATAGTTTTGCCCTCAACAACCTCCCAGAACTGACAAAAATCGAAGCCACCAACAACCCTAAACTTTCCTACATACATCCAAATGCTTTCTATAGGCTGCCGAGGCTGGAAACTCTAATGCTAAATGGCAATGCTTTAAGTGCCCTCCACAGGATCACAGTGGAGTCCCTCCCAAATCTCCGGGAGGTCAGCATGCACTCTAACCCCATCCGCTGTGACTGCGTTGTACGGTGGATGAATATGAACAAGACAAACATTCGCTTCATGGAGCCCGATTCTCTGTTCTGTGTGGAGCCTCCGGAGTATGAAGGTCAGCATGTGCGGCAGGTTCACTTCAGAGAGATGATGGAGATCTGTCTGCCTCTCATCTCTTCAGAAAGCCTCCCCACACAAATCAGTATGGAAAGTGGGAGATCTGTGTCTCTTCACTGCCGTGCCTTTGCTGAACCTGAGCCAGACATTTACTGGGTGACTCCGTCAGGGAGAAGGGTCATCCCAAATGCTGTTTCTACGAGATTCTACATGCACCCCGAAGGCACACTTGATATTTATGATATCACTGAGAGTGAGGCTGGATTGTACACATGTGTGGCACACAATCTTGTTGGGGCGGACCTGAAATCTGTCTCAGTGGAGGTAAATGGATACTTCCCACAACCTGTCAATGACTCACTGAATGTCAACATCGAGACTGTACAGACCAACTCTGTGTTGATATCCTGGAATGCCTCTCATGGTAGTCTGGCACCAAACATTAAGTGGTATACAATGCCCAAGGCAAACCATCCAACGGTGGCATTCACAGCTAGGGTACCATCTGATGTGGCTGTATATAATCTCACGCATCTCAGCCCTGCTACACAGTACAAAGTGTGTGTGGACATTCATAGTATCCATCATAAACACGACACGAGGTGTGTCAATGTCCTAACTAAAGGATTAGAACAAGCCGTAAAGGACTCAGAGAGGTGGGATATGGCGCTGATTGCTGCTTTTGCTGTGCTTTTCATTGTGATCTCAGTGGCTTGCTTTCTGATTTATGTCTTTATGAGGAACCGCTGCATTTATGGAGAACTGAAGCGATACCCTTCCAAAATGGCTCTGATGTCTGAGACCAGCCAGCAGTCTCCCTTTACAAGGCTCTGGATTTCTGGGAAAGGGATGCCAGCTGCTGTTGAGGTGAAAGCCACAGTCATAAATGTGTTGGACAATGCATTTTAAGCTGCACGTGCAGAGGACCACAAAAACTACAAGCAAATTGAAAAGGCAAGAGCGGAGAACTTGCTGTTCCAACTTGCCATTTATCTTTTTGCCTTGAAACAGACATCAAATTCAAATAGAAGGGATGTCTAAAAATCTATAACTAGCTATATAGCCCCTCATCACGAGCTGTCAGATGTGGCAAGTGGCGATGGAACAGTGGTAACTAGCGAGAGGTAGAGACTTGCTGCTAAAATATGCAGTGTGATATTTCTAGGCCATTCACTGAAAACAGATGATATTAAGACATCAGGAAGGTGTTGTTTCTCATACCTGACTGTTAAATGTGTAAAGAGTAGTGGAACAGTCCTTGTGGTCCCAAGCAATACCGTCTGTGCTGTACGACAACCACATAGGCGTGTTAGAGACCCGACTGTTTGTTGAGAAGGAAATCTAGTAGAATAGAAGATTACGGTGATTATGATGTGAACTTTTgatgaaatgttgtttttctatttaaaagcaGATCTGTCTTTTCATGCctaaaattgttatatattctATCCAGAAATGTAACAGGTATCTTCTGTGCAGTAGCCAGTAAACAAGTGTGAATTACTTACAGTATGAAAGATACAACTTAAGTAACGAGACTACacatttgctgaataaaacacaaatgtacatCTTAAGGAatctatatacataaatatatattatatttgattatattactATCAGGACTGGATGTTGTTGAATGCAGACACTTTAAAAGCATCTCTCAGACATAAAATGCAGAAGGTTGATCATGACAGGGTAAGTGCCTACTCCTGAATCTTAGaccagaaaaaagaaaacaacaacaacacttttGAATGTTACTTCTAATGGTTTCCTGAGAGATCCCTGGAGAACAGAGCCATGATTCCAGCCTCACATGCAAATTTGTGCAAATACTATATGAGTATTTTTAGCATAAACATGGTTTAAAAGCATTGCGTCCTTGCTTTGAGTGtgaaaaagccatttttatattGACTGTGCTGTCTGTTCTACCCTAAGCACATTAGTCAATGAGACCAATGTGCTTAAggtaatgtaaaaattaaataaatgtcagcgtttttttttcttctca
>XM_043237924.1
CAGACAGCGGCATGTCAATGTGACAACCGAGCGAGCGGCTGCAGATGCGCCTCTGAACGCGGAGGAAGAAGGAGGTTGTCAGTGCGAGGGACTCTAAAAAGCTCCCAGACGGCTCTCACCTGGTGGACTTCGCCTCGTTCGTACGGCAAAATCTCAACGTTAGGAGCGCGAGCCGCCGCTGCTCCCCTGTCTGCGTTGGAAGAAGACCACGCGCGCTTATTTTCATTTGCGTGGCGCGAGCTTTCCGCTCTCTGGAGCACTGCGCTATAGATGAACGGAATACATGTCGCCTTATCGACCGGAATGACTTACGCTGAAACGAAGTGGATTAGGCTGATGATGGCACCATCAATGAAATGAACGATCTTGCTTCTGCCTAGCTGAAACCACAGCTACCTGAGGTTTAATGGTGACCTTTTTACCTTTATCTGCCCAACTAGTAAAATTCCCTACACCACCTTCAATCTGAATTACGGGAGACTTGGCGACGGGACATTGCATCTGTTGACAGCACATCAGTCAGGGCCTAGGGAAGGCCCTCAAGTGAGGATTCAAGTGATCACCACAAATGGTTGATTATTTTTGAAGTGAAGTGCTTTTGCCACAAAATCTTTAAGGACCAACTACTTACTGGTGGGAACCGTGCCAATATGAAGGACATATCATTTGCGGATTATTTGCTAGTGGGTCTTGCAGTGACTACCTTGGTTCTTGCTGCAGAAGAGAGAGTCAGTTGTCCCAAACTTTGCGTATGTGAGATTAGACCCTGGTTTTCCCCTAGCTCTGTCTATATGGAGGCTCCCACTGTTGACTGTAATGACCTTGGACTTTTTGACCTGCCCATGAGATTGCCATCTGATACACAAGTTGTTTTACTGCAAACCAACAACATTGGTAAGATTGAGCACCCTGGATTGGATTACCTGCCAAACATCACTGAGATTGATCTCTCCCAAAACAACCTGTCATCAATAAGTGATGTCAATATTGGACACCTCCCTCAACTCTTATCCCTACACATGGAGGAAAACTGGATATGTGCCCTACCAGACAACAGCCTTTCTCAATTGGCCAACCTTCAGGAGCTCTATCTAAATCATAACCTCATCTCCTTCATTTCCCCTGAGGCTTTTCGTGGTCTTCAGAGCTTGCTGAGACTTCACCTCAATTCCAACCGGCTTCAAAGTATAAAAAGCGAATGGTTTGAGCCCTTACCGAATTTGGAAATTCTAATGATTGGGGAAAATCCTGTCCTCTCTATTCAGGATATGAACTTCAAGCCTCTGAGAAATCTACGCAGCCTGGTTCTTACTAGAATGAACCTATCACAGATACCAGATGATTCACTTCTGGGCCTTGACAATTTGGAGAGCATCTCATTTTATGATAATACATTCCCTAAGGTACCCCACGGAGCTCTCAGGCATCTGAAGAGCCTCAAGTTTTTGGATCTTAATAAGAACCCCATTGGGCGAATTCAAAGGGGTGACTTTGTGGACATGCTCCATCTTAAGGAGCTGGGCATTAACAGCATGCCCGAGTTGGTGTCCATTGATAGTTTTGCCCTCAACAACCTCCCAGAACTGACAAAAATCGAAGCCACCAACAACCCTAAACTTTCCTACATACATCCAAATGCTTTCTATAGGCTGCCGAGGCTGGAAACTCTAATGCTAAATGGCAATGCTTTAAGTGCCCTCCACAGGATCACAGTGGAGTCCCTCCCAAATCTCCGGGAGGTCAGCATGCACTCTAACCCCATCCGCTGTGACTGCGTTGTACGGTGGATGAATATGAACAAGACAAACATTCGCTTCATGGAGCCCGATTCTCTGTTCTGTGTGGAGCCTCCGGAGTATGAAGGTCAGCATGTGCGGCAGGTTCACTTCAGAGAGATGATGGAGATCTGTCTGCCTCTCATCTCTTCAGAAAGCCTCCCCACACAAATCAGTATGGAAAGTGGGAGATCTGTGTCTCTTCACTGCCGTGCCTTTGCTGAACCTGAGCCAGACATTTACTGGGTGACTCCGTCAGGGAGAAGGGTCATCCCAAATGCTGTTTCTACGAGATTCTACATGCACCCCGAAGGCACACTTGATATTTATGATATCACTGAGAGTGAGGCTGGATTGTACACATGTGTGGCACACAATCTTGTTGGGGCGGACCTGAAATCTGTCTCAGTGGAGGTAAATGGATACTTCCCACAACCTGTCAATGACTCACTGAATGTCAACATCGAGACTGTACAGACCAACTCTGTGTTGATATCCTGGAATGCCTCTCATGGTAGTCTGGCACCAAACATTAAGTGGTATACAATGCCCAAGGCAAACCATCCAACGGTGGCATTCACAGCTAGGGTACCATCTGATGTGGCTGTATATAATCTCACGCATCTCAGCCCTGCTACACAGTACAAAGTGTGTGTGGACATTCATAGTATCCATCATAAACACGACACGAGGTGTGTCAATGTCCTAACTAAAGGATTAGAACAAGCCGTAAAGGACTCAGAGAGGTGGGATATGGCGCTGATTGCTGCTTTTGCTGTGCTTTTCATTGTGATCTCAGTGGCTTGCTTTCTGATTTATGTCTTTATGAGGAACCGCTGCATTTATGGAGAACTGAAGCGATACCCTTCCAAAATGGCTCTGATGTCTGAGACCAGCCAGCAGTCTCCCTTTACAAGGCTCTGGATTTCTGGGAAAGGGATGCCAGCTGCTGTTGAGGTGAAAGCCACAGTCATAAATGTGTTGGACAATGCATTTTAAGCTGCACGTGCAGAGGACCACAAAAACTACAAGCAAATTGAAAAGGCAAGAGCGGAGAACTTGCTGTTCCAACTTGCCATTTATCTTTTTGCCTTGAAACAGACATCAAATTCAAATAGAAGGGATGTCTAAAAATCTATAACTAGCTATATAGCCCCTCATCACGAGCTGTCAGATGTGGCAAGTGGCGATGGAACAGTGGTAACTAGCGAGAGGTAGAGACTTGCTGCTAAAATATGCAGTGTGATATTTCTAGGCCATTCACTGAAAACAGATGATATTAAGACATCAGGAAGGTGTTGTTTCTCATACCTGACTGTTAAATGTGTAAAGAGTAGTGGAACAGTCCTTGTGGTCCCAAGCAATACCGTCTGTGCTGTACGACAACCACATAGGCGTGTTAGAGACCCGACTGTTTGTTGAGAAGGAAATCTAGTAGAATAGAAGATTACGGTGATTATGATGTGAACTTTTgatgaaatgttgtttttctatttaaaagcaGATCTGTCTTTTCATGCctaaaattgttatatattctATCCAGAAATGTAACAGGTATCTTCTGTGCAGTAGCCAGTAAACAAGTGTGAATTACTTACAGTATGAAAGATACAACTTAAGTAACGAGACTACacatttgctgaataaaacacaaatgtacatCTTAAGGAatctatatacataaatatatattatatttgattatattactATCAGGACTGGATGTTGTTGAATGCAGACACTTTAAAAGCATCTCTCAGACATAAAATGCAGAAGGTTGATCATGACAGGGTAAGTGCCTACTCCTGAATCTTAGaccagaaaaaagaaaacaacaacaacacttttGAATGTTACTTCTAATGGTTTCCTGAGAGATCCCTGGAGAACAGAGCCATGATTCCAGCCTCACATGCAAATTTGTGCAAATACTATATGAGTATTTTTAGCATAAACATGGTTTAAAAGCATTGCGTCCTTGCTTTGAGTGtgaaaaagccatttttatattGACTGTGCTGTCTGTTCTACCCTAAGCACATTAGTCAATGAGACCAATGTGCTTAAggtaatgtaaaaattaaataaatgtcagcgtttttttttcttctca

Function

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 3-like

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237923.1 True 3894 mRNA 0.44 2 2178533 2189748
XM_043237924.1 False 3891 mRNA 0.44 2 2178532 2189748

Neighbor

gene id symbol gene type direction distance location
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 156222 2001089 ~ 2022310 (+)
usp18 LOC107725967 coding upstream 184944 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 188595 1987476 ~ 1989937 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding upstream 191358 1985568 ~ 1987174 (+)
si:ch73-352p4.8 si:ch73-352p4.8,LOC107726064,LOC107710127,LOC107656372,LOC107583968,LOC107658734 coding upstream 199242 1973274 ~ 1979290 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding downstream 199231 2388979 ~ 2394441 (+)
foxp2 foxp2 coding downstream 316198 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 432791 2622539 ~ 2641837 (+)
elk3 elk3,LOC107743764 coding downstream 657526 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 717711 2907459 ~ 2908695 (+)
G25300 NA non-coding upstream 10535 2167733 ~ 2167997 (+)
G25288 NA non-coding upstream 71438 2106763 ~ 2107094 (+)
G25249 NA non-coding upstream 127580 2049224 ~ 2050952 (+)
LOC122342875 NA non-coding upstream 145483 2028796 ~ 2033049 (+)
G25193 NA non-coding upstream 269605 1907200 ~ 1908927 (+)
G25309 NA non-coding downstream 93542 2283290 ~ 2283777 (+)
G25310 dock4b,LOC107584044,LOC107658732,LOC107656358,LOC107725897 non-coding downstream 98432 2288180 ~ 2302399 (+)
G25313 NA non-coding downstream 114220 2303968 ~ 2305859 (+)
G25327 NA non-coding downstream 212697 2402445 ~ 2402674 (+)
G25330 NA non-coding downstream 215426 2405174 ~ 2405397 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 182996 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 390436 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 505573 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 846689 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 887308 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 909989 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 929767 3119515 ~ 3306758 (+)
G25514 NA other downstream 1291881 3481629 ~ 3502094 (+)
G25551 NA other downstream 1547754 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 2039881 4229629 ~ 4231092 (+)

Expression


Co-expression Network