si:dkey-222f8.3 (si:dkey-222f8.3,LOC107694297,LOC107757251,LOC107725584,LOC107560723,LOC107655610)


Basic Information

Item Value
gene id si:dkey-222f8.3
gene name si:dkey-222f8.3,LOC107694297,LOC107757251,LOC107725584,LOC107560723,LOC107655610
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5720416 ~ 5724961 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237925.1
TACAAGCCCCGCCCTAACTTCCGGTCGAAGACTACTACCTGGCTGGACTGGCGATGCTGAGAAAACCgtgatatAGATTCACTACCAGACTGACTGCGACCTGTTAAACAAGTGACACTCCCTAGTTCCTGGATCTCAGGTTCTTTCTTCCACGCGCTAACGTTGGTTAAACAATATGCTTCAACCAATCCGGAACGAGAGGCAGTCACCGTGCGCCGCTCTCATTGGTCAGATTCGTCTATCAATCAAAATGTCTTACAACGCGTAAACACATCCctgaaaaacagtttttcatcGCTTGAGTGACCAAACGTGTTTCTTTGCGCCGCAAAGTGGATTAACCTTCGAATATGGCCAGAGGTCAATGCATCAATCAGGAGCTCTCAAATGTGCTGAATGAAATATGGAAGCTTGATGTGAACCGGATGAAACCTGGAAAAGACTATAAAATCAACCTACAGGGGAAGGCTGGCTTTGTGGCTGAAGGCAGTAATAATGCCAGGGACAGTGCTAGAGCTCCACTCTTCTCCTACGTCAATGAAAACAAGCTCAAAAGCATTGATACTTATGCCCACTTCATAAGTCTGCTTGACAATTATGAGATGTCTACAGGAGTAAGTGAGCATGTGACAAAAGAGGAGATTCAGGAAAACCATCTTTTCCTGGATGCCATTCTCAAGACAGAGGTCATGAAGTGTGCCCACAGGTATTTAGTGCGCAAAGGTCTAGCCCGGTCAGATCTGGCTCAGTTTAAAATCCAACTCTATGACCTGTGGTTTAAGCTCTATCGCAGAGACAAAAGTGGAGGTGAAGATTCCTGTGGATTTGAGCATGTGTTTGTTGGTGAAACCAAACATGGTAAAGAGATCATGGGCCTCCACAACTGGGTCCAGTTTTACCATCAGGAGAAACACAATCACGTGGACTACAAAGGTTACAAGGCCAGAAATAACAAGGACACGCCGGATGAGGACGATCACGTCTTGAATCTGCAGTTCAGCTGGAATGGCCTGGTGAAGCCAGTGGGCAGTTGTTTTATTGGCGTCAGCCCAGAGTTCGAGGTGGCTCTCTTTACTATTGTCTTCTTTCTGTCTAATGAGCGTGTGACTAACGTTACTGTGAAGGTGGATGAGTACCTGCTTGAGATTGTGGTGTACAGATTCGGGCGCTCCATTGGGACGTCATACCCCAAAATGATCAGCAGCAACAACCGTGATTTCTAGATTCTAGATCAAGGTCATATCTGGTACGATTTGGACAAATAATCACTATTGCAGTTTGAGGCTCTTAAATTCCTAATCTTGAGCTGTTAGTGTGACATATTTGTGACCTATTTAGGAATCTAAGGAATCTAGTTTGTAATCTACTGTGTAATTTAgttatgtgcaaaaaaaacaacaacaaaaaaacccaattgAAACACATCTGTTTGCACTGTAATTGGGTGAGCCTTAATATGCTTAGAAATGTGTGTTTAGCCTACAATCTATATAAACAGCTATATAGATACAGCTTTTGAATTAGATGCACTAAAGTTAATTTCAAagaatacacacattttttgtgtTATGCTATATtgatttttgcataaaagtTCAGCATATACCAAATATAACTGCTTCAagcttttaagaaatgttttttttgtaaaccgAGTTTGAATTTGCTGCAAGACGTTGTTAAGAGAGGTACAAATCAAAAATGCAAGACAATAAAGTGTATCTTTTGAACAGTGGAGCACTGAACTGCACTAGATGAAGTGGAATGTGGAAAATGTTTCTTCATAAAAGAAGGATATAACTGACACTTTTGTTACTTATCCATCTTTGGAACATAAAATTATTACGCACAAAAAtcatttcgattttttttttaacaatgtaaacTAAATGGATACTTTGACGTATATACTAAAACATTGctgttacagtaaaaaaatatgtgcCTTACATTTGTACAATAAAGATTTTTTCTGTTCA
>XM_043237926.1
GCTGAGAAAACCgtgatatTCAATGCATCAATCAGGAGCTCTCAAATGTGCTGAATGAAATATGGAAGCTTGATGTGAACCGGATGAAACCTGGAAAAGACTATAAAATCAACCTACAGGGGAAGGCTGGCTTTGTGGCTGAAGGCAGTAATAATGCCAGGGACAGTGCTAGAGCTCCACTCTTCTCCTACGTCAATGAAAACAAGCTCAAAAGCATTGATACTTATGCCCACTTCATAAGTCTGCTTGACAATTATGAGATGTCTACAGGAGTAAGTGAGCATGTGACAAAAGAGGAGATTCAGGAAAACCATCTTTTCCTGGATGCCATTCTCAAGACAGAGGTCATGAAGTGTGCCCACAGGTATTTAGTGCGCAAAGGTCTAGCCCGGTCAGATCTGGCTCAGTTTAAAATCCAACTCTATGACCTGTGGTTTAAGCTCTATCGCAGAGACAAAAGTGGAGGTGAAGATTCCTGTGGATTTGAGCATGTGTTTGTTGGTGAAACCAAACATGGTAAAGAGATCATGGGCCTCCACAACTGGGTCCAGTTTTACCATCAGGAGAAACACAATCACGTGGACTACAAAGGTTACAAGGCCAGAAATAACAAGGACACGCCGGATGAGGACGATCACGTCTTGAATCTGCAGTTCAGCTGGAATGGCCTGGTGAAGCCAGTGGGCAGTTGTTTTATTGGCGTCAGCCCAGAGTTCGAGGTGGCTCTCTTTACTATTGTCTTCTTTCTGTCTAATGAGCGTGTGACTAACGTTACTGTGAAGGTGGATGAGTACCTGCTTGAGATTGTGGTGTACAGATTCGGGCGCTCCATTGGGACGTCATACCCCAAAATGATCAGCAGCAACAACCGTGATTTCTAGATTCTAGATCAAGGTCATATCTGGTACGATTTGGACAAATAATCACTATTGCAGTTTGAGGCTCTTAAATTCCTAATCTTGAGCTGTTAGTGTGACATATTTGTGACCTATTTAGGAATCTAAGGAATCTAGTTTGTAATCTACTGTGTAATTTAgttatgtgcaaaaaaaacaacaacaaaaaaacccaattgAAACACATCTGTTTGCACTGTAATTGGGTGAGCCTTAATATGCTTAGAAATGTGTGTTTAGCCTACAATCTATATAAACAGCTATATAGATACAGCTTTTGAATTAGATGCACTAAAGTTAATTTCAAagaatacacacattttttgtgtTATGCTATATtgatttttgcataaaagtTCAGCATATACCAAATATAACTGCTTCAagcttttaagaaatgttttttttgtaaaccgAGTTTGAATTTGCTGCAAGACGTTGTTAAGAGAGGTACAAATCAAAAATGCAAGACAATAAAGTGTATCTTTTGAACAGTGGAGCACTGAACTGCACTAGATGAAGTGGAATGTGGAAAATGTTTCTTCATAAAAGAAGGATATAACTGACACTTTTGTTACTTATCCATCTTTGGAACATAAAATTATTACGCACAAAAAtcatttcgattttttttttaacaatgtaaacTAAATGGATACTTTGACGTATATACTAAAACATTGctgttacagtaaaaaaatatgtgcCTTACATTTGTACAATAAAGATTTTTTCTGTTCA

Function

symbol description
si:dkey-222f8.3 Predicted to enable endoribonuclease activity. Is expressed in several structures, including EVL; mucus secreting cell; nervous system; periderm; and vasculature.

NR:

description
PREDICTED: poly(U)-specific endoribonuclease-C-like isoform X1

GO:

id name namespace
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237925.1 True 1979 mRNA 0.40 8 5720416 5724961
XM_043237926.1 False 1637 mRNA 0.38 7 5720416 5724906

Neighbor

gene id symbol gene type direction distance location
btbd11a btbd11a,LOC107757250,LOC107694300,LOC107725623,LOC107655613,LOC107560708,LOC108279962,LOC108426402 coding downstream 9397 5580502 ~ 5711019 (-)
LOC122342741 cyb5r3,LOC107590616,LOC107694301,LOC107757248,LOC107655553,LOC103021355,LOC105020308 coding downstream 141836 5575657 ~ 5578580 (-)
podxl podxl coding downstream 170768 5540289 ~ 5549648 (-)
net1 net1,LOC107560732,LOC107586493 coding downstream 244234 5454172 ~ 5476182 (-)
prmt8b prmt8b,LOC107757234,LOC107690649,LOC107694311,LOC108436013 coding downstream 485360 5224238 ~ 5235056 (-)
braf braf,LOC107725591 coding upstream 195684 5920645 ~ 5937372 (-)
cnot4b cnot4b,LOC107725638,LOC107560719,LOC107655607,LOC107694291,LOC107757256,LOC107602455,LOC108426397 coding upstream 295208 6020169 ~ 6039771 (-)
il17ra1a LOC107655604,LOC107725575,LOC107560717,LOC107694289,LOC107757259,LOC107550053 coding upstream 334290 6059251 ~ 6064160 (-)
rergla rergl,rergla,LOC107560713,LOC107757225,LOC107594299 coding upstream 346943 6071904 ~ 6075632 (-)
mgst1.1 mgst1.1,mgst1,LOC107725525,LOC107578494,LOC107655601,LOC107555141,LOC107694287,LOC107757263 coding upstream 527808 6252769 ~ 6255043 (-)
trnay-gua_3 NA non-coding downstream 3283 5717046 ~ 5717133 (-)
LOC122342480 NA non-coding downstream 3981 5715139 ~ 5716435 (-)
G26398 NA non-coding downstream 10210 5704489 ~ 5710206 (-)
G26361 NA non-coding downstream 146984 5570544 ~ 5573432 (-)
G26359 NA non-coding downstream 151044 5555142 ~ 5569372 (-)
G26407 NA non-coding upstream 3096 5728057 ~ 5728729 (-)
G26463 NA non-coding upstream 188692 5913653 ~ 5914700 (-)
G26464 NA non-coding upstream 192310 5917271 ~ 5917890 (-)
G26469 tmem178b,LOC107725619,LOC107694293,LOC107655551,LOC107590312 non-coding upstream 218678 5943639 ~ 6017691 (-)
G26487 NA non-coding upstream 352126 6077087 ~ 6077332 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other downstream 166 5719012 ~ 5720250 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other downstream 625776 5085090 ~ 5094640 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other downstream 962589 4731224 ~ 4757827 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other downstream 1452921 4264926 ~ 4267495 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other downstream 1558588 4133977 ~ 4161828 (-)
G26408 NA other upstream 5057 5730018 ~ 5736946 (-)
G26414 LOC107560737,LOC107690649,LOC107757234,LOC107589816,LOC107694311 other upstream 125443 5850404 ~ 5853366 (-)
G26462 NA other upstream 181794 5906755 ~ 5913538 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other upstream 213094 5938055 ~ 5940015 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other upstream 360931 6085892 ~ 6252648 (-)

Expression


Co-expression Network