nup107 (nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040)


Basic Information

Item Value
gene id nup107
gene name nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11830757 ~ 11840052 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237927.1
GGGGGCGCTGGTGACGCGCGCTGCTCGGGAGAACGAGCCTCAGAAGAGTGAAAGGCGCAAAATCCCGTGTGCTAGCATCGTCGGCTAGCAGTAGTGAGTTACAGACGGCATGGACTGGAGTCAGACCTGGTTGAGTCCAGTGGTTCGGGACACCGAGGTGACCCGTGCTGCCCGCAGAAagagttcacacaaaaaagtcGCATTCCCGCTGTCACAGGATGAGACTCCTGGCACCAGCACTACTCCTGCTAGACCACTGCTGCGCCAAACACCTGGATCTCTCCTTAAACAAACTTTCACCCCGAGAAGTGCCCTCAGGAACCCAGATGTGTCTGCCATCCTCGGCACAGGAAGCAGAACTCCTCGTTTTGGTAACACACCCCGTACTAAAGGCAGTCTGAGCATGAACTTGGACGACAGCGATTGGACGAACAGCCTTTACCCGTCTCCTCTGTCTGGGCTGGTGGACGCCAGCTTCACTGAGGATGTCAGCATGAGCGCTCTCATGCTGAAGGAAGACGATCCCGGAGAGTCCGCTTCTCTCAGTTTGTTTCCCGATTTTCTGCAGTCCTATTTACGTCACGCGTCCACAGACGTGTTCGATCTTTTAGAGGAGTATGAGGCTCTCTGTCAAGATAAGGTTAGTATGTTGCAGAAAATGGTTCTTCGGTCGGCCCCTGGTCAGCAGAAATCCTCCAAGACGGTCAGCATTACCTGGTTGCTGCAGCAAGAGATGGTGACCTGGAGACTCATCACTTCACTGTACAGAGACAGAATCCATACCGTTTTAGAGGAAGACATCATGATGGATATAACTATGCCCACTGAGAGTGAGAAGGTAGTAATGGAGCAGTTCTTCCAGAAGGGCAATATGGTGCGACAGAGCCAGctGGTGGTGGATTGGTTGGAGAGTATCGCCAAAGATGAAGTTGGAGACTTCTCTGATAACATTGAATACTACGCCAAATCAGTATACTGGGAGAACACACTGCACACCCTAAAGCTGAGGAGGAATCAGTCCAGCGGTGGTTTCAGCAGGCCGCTGGTCACAGAACTGGATCCCGATGCTCCTATCAGACAGAAGAGACCGCTGGCAGACCTGGACAGAGAGGACGACACCCGCCTGCTCAAAAACCTCTTTAACCTCATACGAGCCGGCATGACTGATGAGgctcAGAGGCTGTGTAAGCGCTGTGGTCAGGCCTGGCGTGCTGCCACTCTGGAAGGCTGGAAACTGTATCATGACCCCAACATCAACGGAGgaggTGGAGAGCTTCAAGCGGTGGAGGGGAACCCTCATCGAAGCGTGTGGAAGGTTTGCTGCTGGAGAATGGCAGAGGAGGAGCAGCTCAACAAATACGAAAGAGCCATCTATGCCGCACTGAGTGGAAACCTCAAACAGCTGTTACCCGTGTGCGAGTCGTGGGAGGACACCGTGTGGGCGTATTTCCGGGTGATGGTGGACACTCTGGTAGAGCAGGAAATCTGTTCTTCTGGTCTGGGCAGTGAAGAGCTGGAGGAGTTGCCCAGAGAGTTCCTAGAGGCCAAttggacGTTGGAGAAAGTCTTTGAAGAGCTTCAAGCTACAGAATCCAAAAGAGTTCTGGATGCAACCAAGGAACATTACCATTTGATTCAGAAGTTCGTTATTCTTGGAGATCTTGACGGTCTTCTGGAGGACTTCAATGATTGGTTGGGAAGAAGTACAGCTTTGCCGGCTCATCTTTTGCGCTTCATGTCGCATTTAGTGTTGTTTTATCGCAGTTTGGGCATGCAACTTAAGgaggaggtgtgtgtggaTGTCCTGAAGGCCTACATCTCGCTTTTAGTAAAGGAAAAGCAGGTGGATCTTATTGCTTTTTACGTCAGTCACCTTCCTGCTGACATGGCCGTGTCAGAATACGCTCAGTTCCTGGAGGAAGTCACCGAGACCGAGCAGCGCAAACACTGTCTGGAGCTGGCAACGCAAGCAGGTTTGGACGTAGCAGCAATCACAAAAACCGTAGTAGAGAccatcagagagagagacacggaTGAGTTTGCCCATCACGATCTGACCCCTTCACTGGATACAGCAACTACAGCGGAGGATCAGCAGAAGATCGATGTCATTGACTGGCTGGTGTTTGATCCCGCCCAGCGAGCCGAGGCCCTTAAACAGAGCAATGCCATCATGAGGAAGTTCTTAGCATCTAAGAAGCATGACGCCGCTAAGATGGTCTTCAACAAAGTCCCTGAAGACTCCATGCGGGAGATCTACCGCCAGTGGGACGAGCAGGGCATGGACACGCCCCTTCCCGCAGAAGCCTCGAATGCTATTCGCGAGCATCTTTGCATCCGTGCCTATCTGGAAGCTCACGAAGCGTTTAATGAGTGGTTCAAGCACATGAACTGTCCTCCAGTGAAACCCACGGCCCCCGCTCAAGCCAAGTTTACAGAGAAGGTGGCCCATGAGATGAAAGAAGCGGAGTACAAGATAGAGCATGAGAACTGGCAGGGCCGTCTGGGAGCGCTCACCGAGGACGTGAAGGAGAGGATCTATAATGTGCTGCTGTTCGTAGACGGGGGCTGGATGGTGGACGTGAAAGAGGACACCGAGGAAGACTCTGAGCGAGCTCACCAGATGGCTCTGCTGCGGCGCTTGTGTCTGCCCATGATGTGTTTCCTCCTGTTAACCGTACTGCAGCGCACCGAGCGCCACCAGGAGAGCCTGCGCCTGGCCGACATCGTCGCGTCGGACCAACACCGACTCTATGAGGTTTTCTCTAAAGACGAGCTGCAGAAGTTTCTACAGAAGATGAGGGAATCCTCTTTACTCCTGTTGGACAAAGGCCTGGATCCACTTGGATATGAGATTCAGCCCTAGACACCGTTTGTTTCTCATTCTGTtcacgaagaaaaaaaaaagctttgtaattttgtatttcaatAAAGATTAACTGTTTTGGA

Function

symbol description
nup107 Predicted to be a structural constituent of nuclear pore. Acts upstream of or within mRNA export from nucleus and nuclear pore complex assembly. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore outer ring. Is expressed in head and intestine. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome; nephrotic syndrome type 11; and ovarian dysgenesis 6. Orthologous to human NUP107 (nucleoporin 107).

NR:

description
PREDICTED: nuclear pore complex protein Nup107-like

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0051292 nuclear pore complex assembly biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14301 NUP107, NUP84; nuclear pore complex protein Nup107

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237927.1 True 2949 mRNA 0.52 26 11830757 11840052

Neighbor

gene id symbol gene type direction distance location
cd36 cd36,LOC107590984,LOC107680017,LOC107694198 coding downstream 37837 11785346 ~ 11792920 (-)
kdm7aa LOC107694190,LOC107590789,LOC107710674,LOC107590966,LOC107680036 coding downstream 120255 11691122 ~ 11710502 (-)
orc5 orc5 coding downstream 213268 11607310 ~ 11617489 (-)
golgb1 golgb1,LOC107694188,LOC107755883,LOC107590726,LOC107710669,LOC107590960 coding downstream 228735 11582762 ~ 11602022 (-)
hcls1 hcls1,LOC107755885,LOC107694186,LOC107710670,LOC107680042,LOC105023407,LOC103459100 coding downstream 248454 11575175 ~ 11582303 (-)
LOC122343504 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776 coding upstream 439589 12279641 ~ 12371170 (-)
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding upstream 573734 12413786 ~ 12430886 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding upstream 652302 12492354 ~ 12536326 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding upstream 699005 12539057 ~ 12671471 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding upstream 1235164 13075216 ~ 13090835 (-)
LOC122342677 NA non-coding downstream 10460 11794283 ~ 11820297 (-)
G28033 NA non-coding downstream 15452 11798566 ~ 11815305 (-)
G27987 sema3c,LOC107710663,LOC107755880,LOC107680038,LOC107694195 non-coding downstream 25847 11780959 ~ 11804910 (-)
G28029 NA non-coding downstream 141957 11685732 ~ 11688800 (-)
LOC122343274 NA non-coding downstream 182334 11618450 ~ 11648423 (-)
G28090 NA non-coding upstream 156961 11997013 ~ 11997303 (-)
G28086 NA non-coding upstream 178557 12018609 ~ 12019001 (-)
G28117 NA non-coding upstream 308080 12148132 ~ 12155251 (-)
LOC122342788 NA non-coding upstream 396593 12236645 ~ 12238137 (-)
G28130 NA non-coding upstream 425613 12265665 ~ 12268740 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 146895 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 256991 11414720 ~ 11573766 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 1297214 10524531 ~ 10533543 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other downstream 1308508 10484922 ~ 10522249 (-)
zgc:193726 NA other downstream 1467191 10355711 ~ 10363566 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 1913 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 174579 12014631 ~ 12015767 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 625560 12465612 ~ 12489181 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 1336909 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 1476880 13316932 ~ 13361938 (-)

Expression


Co-expression Network