CI01000004_10788659_10809214 (JPH1B, JPH1)


Basic Information

Item Value
gene id CI01000004_10788659_10809214
gene name JPH1B, JPH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10788659 ~ 10809805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_10788659_10809214.mRNA
AGAAATAGGGTATGCTATATAGAAACTAATACATTTTTAAATATTGTATACATAAAATAAAAAAGGGATGAGCTGAAAATAGAATAAATATGGAAAGGGAAATAATTTAGATATTTAGAAAATATGGTTAAACATTCGAATCGAAACCTGTCTGTCTATCTGGTCCTATTTCTGATAATCAAAAACTAAAACTTACAACGTTCACCCACCCATAATGTGAAACAATGTGAATGTGGTACAACGCGAGGGCGGGCTTGTAGTACTGACGTCATCAGCTGGGTGTCTCTCGCCCGGCTTTGGGCTCCTGTCTCCTCGCTCTCTCCCTCCCTGTGAAGCGAACAGGGGGGAGAGGATCATTAAAAAAGCCAGGAACGGCGACAGTGACAGCGCCTGCGGCTCCGGCGCCTGTGCGCGATCCTCCAACACTCGCACCAATGCGCGCGCTCACCCATCTCCAGCAGACACCACCGCATCACACCACTGCGCCCGCAGTCTGATATTTACCCCCCATTTTATTGTTGTTGTTGTTGAGCATCCGACATACGACCAACCATCGAGACGTAAACACTTTCATTTCAACCCTTCATCTGAATGACGGGCGGACGGTTCGACTTCGACGATGGCGGCACTTTCTGCGGTGGATGGGAGGACGGAAAAGCCCACGGACACGGCATCTGCACCGGCCCTAAGGGCCAGGGCGAATACTCCGGGTCCTGGTCCAACGGGTTTGAGGTAGTCGGAGTGTACACCTGGCCCAGTGGGAATACGTACAAGGGCTACTGGGCTCAGGGGAAGCGGCACGGGCTCGGCGTGGAGTCCAAGGGGAGGTGGCTGTACCGCGGGGAGTGGAGTCACGGATTTAAGGGTCGGTATGGGGTTCGCCAGAGTCTCAACACACCTGCCAGGTATGAAGGCACATGGAGTAATGGACTGCAAGATGGATATGGGGTCGAAACATACGGGGACGGGGGTACATACCAGGGCCAGTGGATGGGCGGCATGCGACACGGCTATGGCGTACGTCAGAGCGTGCCTTACGGCATGGCCACTGTCATCCGCTCCCCGCTGCGTACCTCACTGGCCTCCCTCCGCAGCGAACAGAGTAACGGCTCTGTCCTGCATGACCACATGTCTGACAGCCCTGCTGGCACCCGCGGTGGCTTTGTTCTGAACTTCCACAGCGACAGCGAAGTGGGTTCCGGCAAAAAAAAGGGCCTCTTCAGACGAGGTTCGCTGTTCGGGAGCCTCAAGCAGCTGAGGAAGTCCGACTCCCGCTCCTCCATATCCAGCAAGCGCAGTTCGGCACGAAGTGACGCCACCATGAGCCGCATAAGCTCTAGCGACGCAAACTCCACCATTAGTTTTGGCGATGGAGAAGTGGCAGACGAGTACATGCCGGCTGAGGACAACGTTGATGCCACCACAACTGAGTCGTACATGGGCGAGTGGAAGAATGACAAGCGGAATGGTTTCGGAGTCAGTGAGCGCTCCAATGGGATGAAATACGAAGGGGAGTGGATAAACAACAAACGGCATGGTTACGGGTGCACAATGTTCCCTGATGGAACGAAAGAAGAGGGGAAGTACAAAAATAACGTTTTGGTGCGTGGTATCAAGAAGCAGCTTATTCCCCTCAAGAACACCAAGACGAAGCAGAAAGTGGACCGTGCTGTTGAAGGAGCCATAAGAGCGTCTGCCATTGCCAGAACAAAAGTAGAAATTGCCACCTCAAGTTCATTGACAAAGCTGGCTAAAGGCACACATCGATTTTTGCAAGTTGAAGCAGGTTGTGAAGATCAGAGTGTGTTAAACAGGAACTCAATAATGTTGTTGTGTGAGCTGAGCGGTACCTCTGATTCATGGAAGGACATAACCGCACACGCCAGGGCCAAAGCAGAGGCAGCTGACCAGGCAGCCCTGTCTGCCAGCCAGGACTCTGATATCGCCAGAGCAGTGGCCAGAGAACTGTCCCCCAACTTCCATCAACCAGGCCCTGACTATATCAAGCAGAGGTTCTCCAGTGAGCCCATTGAGATTAAAGAAGTACCAGAAGAAAAGAAAGAGAAATCGCCTTCAGGAAGTCCGCACTTTTATCGCAAAGGCACAACCCCAAACCAGTCCCCTTCCCAAAGCCCCGGACCTACACCACCTCCCTCACCCCCCCTCAGCAAGAAAAAGCCCTTCTTTAACAGAAGTGCCCCAAAAGCCATAAAAGAAAACAAGCCCCCTGCTGCCGAAAGCCTGGCAGTGGGTGTCACCAAGGCTACTTCCAGGATATCAGACAAACAGGAAGTACAACAGGAGGTAGTACCCGTAGCCAAACCCTCCAAGCCGTCGGCGCCGGTCGCCAATGCCTCCAGCCCTGGGAACGGTGAGCTGCACTCCCAGTATCACGGATACTTTGTGAAGGCTGAGGTGATGATGCCACCTGATGATCTGGAGGATGAAGAACACCATGTAACGTCGACTGCTCTTACCAGGATGCCCCCGCCTGCAAAGCAGTACCGTGCACCGACACCCAAACCAGTAATGGCCAAAGAGAGCAAACCCGAGCCCAAACTGAAGAAACAAGAATCATTGAAGCCAAAGAGCCTAGCAGAAACTAAGAAAGCCAGCATGGAAATTACTACTGACATTGTTGAGGAGGAATCAGTAAGGTCCCAACTCAATATTGGTCATTCTAGTGATGCTGATAAATATTGGACTGGCAATTATTTTTGTCCATTTCCTCACTTGACGGAACATTACACTCAG

Function

symbol description
jph1b Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2K. Orthologous to human JPH1 (junctophilin 1).
jph1 Predicted to be a structural constituent of muscle. Predicted to be involved in calcium ion transport into cytosol and regulation of ryanodine-sensitive calcium-release channel activity. Predicted to act upstream of or within muscle organ development. Located in nucleoplasm. Implicated in Charcot-Marie-Tooth disease axonal type 2K.

GO:

id name namespace
GO:0030314 junctional membrane complex cellular_component

KEGG:

id description
K19530 JPH; junctophilin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_10788659_10809214.mRNA True 2754 mRNA 0.52 6 10788659 10809805

Neighbor

gene id symbol gene type direction distance location
CI01000004_10766385_10766860 TCEB1B, TCEB1, GM14517, TCEB1A coding downstream 21799 10766340 ~ 10766860 (-)
CI01000004_10757852_10760211 NA coding downstream 27517 10757543 ~ 10761142 (-)
CI01000004_10692864_10704094 TRPA1A coding downstream 84565 10692637 ~ 10704094 (-)
CI01000004_10619819_10627261 CNPY1 coding downstream 161398 10619019 ~ 10627261 (-)
CI01000004_10553379_10573352 PAXIP1 coding downstream 213416 10553037 ~ 10575243 (-)
CI01000004_10847650_10847940 NA coding upstream 37752 10847557 ~ 10847995 (-)
CI01000004_10884499_10886045 CBLN2A, CBLN2, CBLN2B coding upstream 74621 10884426 ~ 10886045 (-)
CI01000004_10944147_11018487 CTNND2B, CTNND2 coding upstream 132572 10942377 ~ 11018487 (-)
CI01000004_11043026_11046108 NA coding upstream 233075 11042880 ~ 11046108 (-)
CI01000004_11052319_11059170 RP1 coding upstream 241589 11051394 ~ 11059170 (-)
G31212 NA non-coding downstream 16133 10772325 ~ 10772526 (-)
G31206 NA non-coding downstream 33129 10755229 ~ 10755530 (-)
G31204 NA non-coding downstream 36292 10750849 ~ 10752367 (-)
G31200 NA non-coding downstream 61517 10726912 ~ 10727142 (-)
G31196 NA non-coding downstream 75728 10712286 ~ 10712931 (-)
G31224 NA non-coding upstream 8345 10818150 ~ 10818353 (-)
G31234 NA non-coding upstream 21716 10831521 ~ 10831904 (-)
G31243 NA non-coding upstream 39626 10849431 ~ 10849634 (-)
G31245 NA non-coding upstream 48710 10858515 ~ 10858888 (-)
G31258 NA non-coding upstream 70490 10880295 ~ 10880865 (-)
G31203 NA other downstream 38018 10746437 ~ 10750641 (-)
G30316 NA other downstream 1381738 9377937 ~ 9406921 (-)
G29746 NA other downstream 2430532 8354498 ~ 8358127 (-)
G29656 NA other downstream 2823159 7964364 ~ 7965500 (-)
G29388 NA other downstream 4156752 6631293 ~ 6631907 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 597660 11406957 ~ 11412907 (-)
G32150 NA other upstream 966714 11776519 ~ 11780951 (-)
G32207 NA other upstream 1566363 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 3740995 14541515 ~ 14551352 (-)
G33746 NA other upstream 3758988 14568793 ~ 14569264 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019451 jph1 coding CM030124.1 CM030124.1 20862132 ~ 20869165 (-)
tiger barb (Puntius tetrazona) G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 unknown NC_056700.1 CM032069.1 14175364 ~ 14179615 (+)