shisal1a (LOC107583751,LOC107690459,LOC107725687,LOC107729866,LOC107676911)


Basic Information

Item Value
gene id shisal1a
gene name LOC107583751,LOC107690459,LOC107725687,LOC107729866,LOC107676911
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7423177 ~ 7451653 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237955.1
CTGCGCTCAGTTTAAGTGCAGGGACCGAGCGCATGGAAGGTAGAGGGCAGAAGTGCGTGTTTCCTCTCCTCCCCTTTACCTCCGTTCATCTTCTCTTGCAGATGACAGGCTGAACGCTCAGTGGAAACAGCAGGATgagtgtgtacctgtgtgtgtgtgccgtgcTCCATCGGAGAGCCTCATTCAACATGCTGTAACATCAGGCAAACTGGCTCcacaagagagaaagagacacacaaAGAGAGCGTGCGGACTAAAATGACCACCAGGCGGTGAGAAATGAGCGTGTGTTGACTTTCTTCATGAGGGCTGAGAGATGACCATGAACGGCCGCTGGTCCTTCAACACCCTGGCCATCATCTTTATCCTGCTGTCCACCGCAGCTCTCTCTGCGCACTTCAGGGTGTGTGAGCCTTACTCCGACCACAAGGGGCGCTATCACTTTGGTTTCCACTGCCCTCGACTCTCGGACAACAAGACCTACATATTCTGCTGTCACCATAACAACACGGCCTTCAAGTACTGCTGCAACGAAACTGAATTTCAGAGCGTGATGCAGCTCAACCTCACCACCAACTCAGACGGCTTTGCCCACAATAACTACACCGCTCTCATCGGCGTGTGGATTTATGGCTTTTTCGTCATGGTCCTCCTGGCTTTGGACTTCTTGTACTACTCGGCTATGAACTACGAGTTGTGCCGGGTCTACCTGGAGAAATGGGGGCTGGGAGGACGGTGGCTCAAACAGGCCAGGAGTCAATGGCACAACGCGGCTCAGGAGGGCGAACACAACATGGGACCGGGCCTGAGTCAGCACCACCACGCGAGGCACAGTTTGAGAGGAGAAGCACAGAGCCCTACGCTCTTGACCTTCCAGACCTCAACAGCCTGGTGA
>XM_043237956.1
TGCGCTCAGTTTAAGTGCAGGGACCGAGCGCATGGAAGGTAGAGGGCAGAAGTGCGTGTTTCCTCTCCTCCCCTTTACCTCCGTTCATCTTCTCTTGCAGATGACAGGCTGAACGCTCAGTGGAAACAGCAGGATgagtgtgtacctgtgtgtgtgtgccgtgcTCCATCGGAGAGCCTCATTCAACATGCTGTAACATCAGGCAAACTGGCTCcacaagagagaaagagacacacaaAGAGAGCGTGCGGACTAAAATGACCACCAGGCGGTGAGAAATGAGCGTGTGTTGACTTTCTTCATGAGGGCTGAGAGATGACCATGAACGGCCGCTGGTCCTTCAACACCCTGGCCATCATCTTTATCCTGCTGTCCACCGCAGCTCTCTCTGCGCACTTCAGGGTGTGTGAGCCTTACTCCGACCACAAGGGGCGCTATCACTTTGGTTTCCACTGCCCTCGACTCTCGGACAACAAGACCTACATATTCTGCTGTCACCATAACAACACGGCCTTCAAGTACTGCTGCAACGAAACTGAATTTCAGAGCGTGATGCAGCTCAACCTCACCACCAACTCAGACGGCTTTGCCCACAATAACTACACCGCTCTCATCGGCGTGTGGATTTATGGCTTTTTCGTCATGGTCCTCCTGGCTTTGGACTTCTTGTACTACTCGGCTATGAACTACGAGTTGTGCCGGGTCTACCTGGAGAAATGGGGGCTGGGAGGACGGTGGCTCAAACAGGCCAGGAGTCAATGGCACAACGCGGCTCAGGAGGGCGAACACAACATGGGACCGGGCCTGAGTCAGCACCACCACGCGAGGCACAGTTTGAGAGGAGAAGCACAGAGCCCTACGCTCTTGACCTTCCAGACCTCAACAGCCTGACACCCAGTTGGATCCCAAGGATGCGCTTAGTACGACAAAGGAGGAACGTCCAGGAAATGGAGATTTGAATTCAGAGACTCTTTTCCTGGTCCCATCTACATTTAGGACACGGACTGCGCCGGCTACCTCCTGCAGCTCTGCTGGATGGCATTTTCTCCACATGAAGACGCTGATGCTGAGACTGACAGCTGCAAATGAGTTTCTCTGCCCAATCAGAGGAGGCTTGTTCAGCTGGATCTACTTTTCGACAGCTGTTGAAGGACTTTAATGAGACTGTTGTCTTTGATGCCCACTACCTTGCCTTGTCATTTCGGGAAGTTAGGACTTAGATGCAGGGAATAGGACTTTTCGTAAAAGATAGAGAAGAGGCCGTCGTGTCCATAAATCTCTACAATATATAGATCACGTTTGCACTGCTCTGAAGCCGTTGGTTGGCTTTTCTTGAAGTAgcgaaaaagtttttttttattttaatttgtcctAATAGGACCATCCGCATCAGTTAAAACTGCagtgaatgtaaaatattagtTGCGGTCACAATTACCGTTGTTCTGCGAGTTTTTGCGGGCAAAATCCAGACATTTTAGGGCAAAATATTATGAGGGAGAAATAGTTTTACATCAAATGTTGACCAACGGGTTGGTTTGGAAGCGTATAAATGTAAACTACAACAGACAAAGGACCTTTGTTTCTTGCGGAAATTTCTCTACCGCTTTGGATTAAACGCGATTTGGAATTTTCTAATTCTGTTTAGAAGACATGACGTCGCCATTTTAGAATACTTTGTAACTACTGAGATTTCAGCCAGGGGTAATAATCATTTATACATAAAGCAATAGACAATAAAGAAGACGGTAAGAGCCTGAAACTTGACTCAATGGAGTTTAGATCTGGAAGTCATTTCATTGTAGAAATAcagcaacatatatatatatatatatatatatttttttttatccctatTGAACTTGTGCACTGAGTCGAAGCCAACTAGACATAGGTAAACGTAGCCACTGTTAGGCTGTGAGTATTCACCTGCAATAACACACAGCGTTGTGCTGAGTCGTGTTGTGTATAGAGGAGAACTTGTTGTGCTCTTGTTTATCTATTTAAGGTGAAACTAATAGTTTTTCCCCTCGTGGAGGGAAGAGAGATGTGTTATGTTTTGGAGTAATAAGTTATAAATTGCCTTACGGTAAATCTGTAGTACATGCCTAGCACCTTGTTCTGTGATAGTGGTTGGTACCTCAGTTGAAGTGTGATATGGCCGTCCACCTGTTAaacttctctctgtttttatGACGGGGTCCGTGGGTGGGATGGGGGGGGCAGCGGAGTTGTAATTGCACTTGTTAACTTTTTACTGTTACAATCTGGGAGAAATAAAGATTTAtcttttgcagtgtt

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1644 homolog isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237955.1 False 895 mRNA 0.54 4 7423177 7442282
XM_043237956.1 True 2301 mRNA 0.46 5 7423178 7451653

Neighbor

gene id symbol gene type direction distance location
cmasa LOC107725656,LOC107676932,LOC107587160,LOC107690429,LOC107583561 coding upstream 48122 7371023 ~ 7375055 (+)
LOC122343892 NA coding upstream 49183 7373854 ~ 7373994 (+)
LOC122343893 NA coding upstream 52902 7370135 ~ 7370275 (+)
kcnj8 kcnj8,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158,LOC107595650 coding upstream 54189 7365554 ~ 7368988 (+)
abcc9 abcc9,LOC107725580,LOC107655566,LOC107690381,LOC107583096,LOC107587156,LOC107729856 coding upstream 58719 7331871 ~ 7364458 (+)
psmc2 psmc2,LOC107587164 coding downstream 26004 7477657 ~ 7481279 (+)
tspan33a tspan33a,LOC107725621,LOC107587188,LOC107729833,LOC107690898,LOC107595743 coding downstream 43303 7494956 ~ 7501031 (+)
smo smo,LOC107725609,LOC107690544,LOC107729864,LOC107676906 coding downstream 51919 7503572 ~ 7510838 (+)
cax1 LOC107725610,LOC107587166,LOC107676922,LOC107690555,LOC107584270,LOC107729854 coding downstream 59888 7511541 ~ 7519725 (+)
zc3hc1 zc3hc1,LOC107676937,LOC107587167,LOC107690584,LOC107584496 coding downstream 76684 7528337 ~ 7532567 (+)
G26669 pus7l,LOC107591455 non-coding upstream 334818 7083300 ~ 7088359 (+)
LOC122343425 NA non-coding upstream 362135 7057424 ~ 7061042 (+)
LOC122342579 NA non-coding upstream 409516 6985243 ~ 7013661 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding upstream 1018778 6399167 ~ 6404399 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding upstream 1125097 6216841 ~ 6298080 (+)
LOC122342925 NA non-coding downstream 138908 7590561 ~ 7636680 (+)
LOC122342735 NA non-coding downstream 664235 8115888 ~ 8123874 (+)
G26994 NA non-coding downstream 673606 8125259 ~ 8125994 (+)
LOC122342736 NA non-coding downstream 677508 8129161 ~ 8132328 (+)
G27066 NA non-coding downstream 723812 8175465 ~ 8175799 (+)
G26692 NA other upstream 195740 7187940 ~ 7227437 (+)
vhll NA other upstream 1032250 6388543 ~ 6390927 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 1524350 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 1560864 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 2025291 5354332 ~ 5397886 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 81259 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 589779 8041432 ~ 8100749 (+)
G26993 NA other downstream 686085 8137738 ~ 8138439 (+)
G27079 NA other downstream 796259 8247912 ~ 8249223 (+)
stmp1 NA other downstream 1031237 8482890 ~ 8483831 (+)

Expression


Co-expression Network