lum (lum,LOC107659852,LOC107565637,LOC107725655,LOC107744894,LOC107690761,LOC107585613)


Basic Information

Item Value
gene id lum
gene name lum,LOC107659852,LOC107565637,LOC107725655,LOC107744894,LOC107690761,LOC107585613
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8278560 ~ 8281902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237957.1
TTCCTGTCTGTGTCCCGCGAAGAACTACATGTCCCAAACTGCTTTGCTACATGTGAACCTTGTTAGAATCCATATGTTTCTCAGGGAACAACTGCTGACATCTACACACTAGAACCGCCTGACTGCTGTTTCCTATCAATCTTGGGCGACTAAGAGTCCTCGGGCCGCACACAACTCTACCTGAAGTCGTGCACAGAGAGAGAAGCAGGAAGGTTTGATTCGACTGAGTTGTGCAGCCATGTTTGCTCTTGGCTTCTTCCTGTTGGCTGGACTGCTATGTCAGAGTTTGGCTCAATACGATTACTATGACGAATACTACGTCCCCTCCGCACCACTGGAGGGATTATCGTCTCCTACTTGTGCCCAGGAGTGCGAATGTCCCATCAGCTTCCCCACAGCCATGTACTGCAACGAGCGCAACTTGAAGTTTATCCCTATTGTGCCGAGCGGCATCAAATACCTCTACCTGCATAACAACTTAATCGAGGAGATCAAGACTGGCGTGTTCGACAACGCCACCGACCTCCGCTGGCTCGTCCTGGACAACAACATCATCACCAGCGACAAGATCCAGTCTGGTACCATTGATAAATTGAGCAAACTGGAGAAGCTCCTCTTCAGCAATAACAAGCTAACCAAACCCCCTGGTCCTCTTTCGAAGTCCCTGGATGAGTTGAAGTTGGTCGGCAACCAGCTGAGCTCTTTCCCGAACACCTTGTCTGGGATGGAAAACCTGACCACCATCCACCTGTCCAAGAACAAGCTGACCACCGAGAGCATCACAGGTGCCTTCAAAGGCCTGAAGTCCCTCGTTCTGCTGGATGTGAGCGAGAACAAGCTCAAGAAACTTCCCGCGGGAGTTCCCCCTTCACTTTTGATGCTCTACGCCGATACTAACGAAATCGACAGCATCCCTAGTGGCTATCTGGCCAAGCTCCCGCTCCTGCAGTACCTGCGTGTCTCTCACAACAAGCTGGTGGACTCTGGTATCCCTGCGGGTGTATTCAATGTGTCTTCTTTGCTTGAGCTCGACCTGTCTTTTAACAAGCTGAAGTCCATCCCAGAGATCAACGAATCGCTCGAGCACCTGTACCTGCAAGTCAATGAGATAAGCAAGTTTGACCTGACGAATATCTGCAAGTTCAGCTCCCCGGTCAACTACTCTCGACTGAGGACCCTGCGCTTGGATGGAAACAACCTCACACACAGCAGTATGCCAGATGACACGGCTAACTGCCTACGCCAAGCCTCAGAGATCATCTTTGAATAGAGTCGCATCTCGCTAGTAGTTTATCAAACAAATTAAGGCTATTGCTCTTATTAGACACTCTGATTGACATATGCATGTCTTTATTCATGATCCCGGCAACCATATCTGGTTACATGCAACACTTCCtctataaaatgtttatgaacacatctgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaagggcAGCAGTAGTCTGGGGTCTTCAAATCTGGCACATAAAATTTCAGTCTTGTATGGTACTGTATAAAGAGTATTAGATGAATTAGATGAAATATTCCCATTTAAATGAGAGACATATTTGTGCAAATTGTGAATAGCCCAGTGTGCACTCTATACGAAGCAGCACTATATGTCATCTAAGCGCATGTTAAATACCTTATCAGTCACAATTGTAATCATGTTATTAATAAACCTGCCGGTAAGGACATTAGATTGTTTAGAGTACACATTATGGAACATAACTATCTTAGTTGtatataaaatgactaaatgtgcAGTGATGTTGAAGGATATCAAGAATTCATCTGAAATTGAAATGCacgcaaaactgaaaaaaagaaaaaatgctggACACTGAATGAATTTGATGAGGTTTAGCTAACTGCTAAATAAAtctaaaggtttttttattattatttaactgaGGAATTTCAGTGGCAAAATGTTGTATTAATAGCAAATTAGTATCAGCTTGAATTTCTTAACTCTGCCAACATTTATACCATATTTTATCTGCATGCAGTTCATCTTATTTTGTAACAGAGATTGCTTTCAATTCTATGGTAAACcacattgaattttttttatgtattcaatACACCATTTCACATCATCACCATGTTAGTCAAATTATTGAGCCGTGAGATTACAGTAACTTTGGCAGACTGTTGTAGAAGTTGTAAGTTCCctgatttgttgttttattttgttaaaaaaaaacaaatgccaaAGCAGTTTGTTCatctttatttgaataaacCATATTTCTTACA

Function

symbol description
lum Acts upstream of or within collagen fibril organization and embryonic camera-type eye morphogenesis. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; epidermis; head mesenchyme; heart; and nervous system. Human ortholog(s) of this gene implicated in carotid artery disease; coronary artery disease; and pancreatic cancer. Orthologous to human LUM (lumican).

NR:

description
PREDICTED: lumican

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process

KEGG:

id description
K08122 LUM; lumican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237957.1 True 2301 mRNA 0.42 5 8278560 8281902

Neighbor

gene id symbol gene type direction distance location
kera LOC107725681,LOC107744893,LOC107690746,LOC107596099 coding downstream 4030 8267724 ~ 8274530 (-)
epyc epyc,LOC107744933,LOC107690887,LOC107592694,LOC107659828,LOC107725680,LOC107565627 coding downstream 12371 8255550 ~ 8266189 (-)
atp2b1a atp2b1a,atp2b1,LOC107676914,LOC107690705,LOC107585291,LOC107725550,LOC107744884 coding downstream 120191 8131796 ~ 8158369 (-)
mest LOC107676916,LOC107725549,LOC107690703,LOC107744881 coding downstream 162108 8112969 ~ 8116452 (-)
chchd3a chchd3,chchd3a,LOC107555550,LOC107676930,LOC107584776,LOC107725634,LOC107690666 coding downstream 362953 7859957 ~ 7915607 (-)
dcn LOC107744892,LOC107690767,LOC107585689,LOC107659851,LOC107565639,LOC107725622 coding upstream 7353 8289255 ~ 8304456 (-)
LOC122342541 LOC107725512,LOC107565629,LOC107690781,LOC107744891,LOC107585840 coding upstream 39552 8321454 ~ 8325846 (-)
btg1 btg1,LOC107585922,LOC107725570,LOC107659850,LOC107744895,LOC107690792,LOC107565641 coding upstream 85634 8367536 ~ 8374512 (-)
caprin2 LOC107725657,LOC107744896,LOC107694696 coding upstream 123923 8405825 ~ 8414329 (-)
sinhcaf fam60a,LOC107694695,LOC107586002,LOC107725569,LOC107744898,LOC107659848,LOC103028480 coding upstream 133391 8415293 ~ 8422905 (-)
LOC122342531 NA non-coding downstream 32051 8200177 ~ 8246509 (-)
LOC122342218 NA non-coding downstream 108973 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 151736 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 154700 8123114 ~ 8123860 (-)
G27051 NA non-coding downstream 156852 8121346 ~ 8121708 (-)
G27240 NA non-coding upstream 194262 8476164 ~ 8478311 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 251929 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 480197 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 522253 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 523342 8805244 ~ 8809184 (-)
LOC122343432 NA other downstream 28633 8247911 ~ 8249927 (-)
G26951 NA other downstream 720107 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1057649 7214334 ~ 7220911 (-)
il22 NA other downstream 1537819 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 1917076 6350491 ~ 6361484 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 178604 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 231728 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 588313 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 610117 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 722358 9004260 ~ 9009304 (-)

Expression


Co-expression Network