tmtc2a (tmtc2a,LOC107739145,LOC107548115,LOC107658791,LOC107656207)


Basic Information

Item Value
gene id tmtc2a
gene name tmtc2a,LOC107739145,LOC107548115,LOC107658791,LOC107656207
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5126801 ~ 5156735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237962.1
GCCAAACATCACACGCGTGTTGTGCGTTTGATAGGAGGGTGTTACTGCAACGGGATGTTTCACTACGGCTTTCTGGACGAAGAGCAGCCGAACACTCTCCGTCCGTTAGCGAAAGCACGCGGTGCGAGCAGATATGCGAGCTGAACCCACAGCTCTGGACCGAGAATGGGTTAGACATGTTTGAAACTCTTCCCATCTCGCCGCGGGAGCAAAACAATGAGGACGGCAGCGACCGGAGACGGGGACTGATCGGTGTCATTCATTCCTGGACTTTCTTCGCTCGTCTTTGTCGTTGAGATGATAGTGGAGCTGGTGTGCAGCGCGGTGGCTCTGCTCCTCTACATGAACACACTGAGCGCGGATTTCTGCTACGATGACAGCCgagcaatcaaaaccaaccAAGACCTCCTACCAGACACTCCATGGATGAACATCCTGTACGATGACTTTTGGGGCACTCTGCTCACCCACAGCGGCAGCCACAAATCTTTCCGCCCCCTCTGCACTCTCTCTTTTCGCCTCAATTATGCCCTGGGCGGCTTGGACCCCCGGGGCTACCACCTGGTCAACGTGGGCCTGCACTGCTGCGTCACTGTGCTCTTCACTGCTTTCTGTCGCCTCCTGCTGGGTGGAGGACCGTGGAGCCTGTTGGCGGGTCTGCTCTTCGCCTCGCATCCCATACACTCTGAAGCGGTAGCGGGGGTGGTGGGGCGAGCAGATGTGGGtgcagctttttgcttcttGTTGTCCCTGATATGTTACACACAGTACTGCCATCTTAGGTCCAAAGCAGTGCACACGGATGGGGTTGTGTGGCGGACAGCGCTGTGGCTTGCTGGGAGTCTGGGTGCTGCTGCGGCAGCTTTACTGTGGAAGGAGCAGGGAGTGACTGTTCTGGCCGTGTCAGCCGTTTATGACCTCTGTGTTGTGCATCGTTTGAGACTCCGGCAAGCAGTAATGATGGTGCTGAAGAGGAAGAACATGAGCTTGCTAGTCAGTCTAGCATGGCTGGTTGGTTGGGGGATGATTCTTCTAGCAGCTCGCTTTTACTGGATGGGAAACAAACCTCCAAACTTTTCCAACTCTGACAACCCTGCAGCCGACTCGCCTCACTTCCTGACTAGAGCGCTCACTTTCCTGTACCTGCCAGCCGTCAATGCCTGGCTCCTCCTCTGCCCTGACAAACTCAGCTTTGATTGGTCAATGGATGCCATTCCTCTGCTCAGATCCATTGCTGATTGGCGGAACCTTCAGTCGGTTTTGTTTTACTCAGGATTCGCTCTCATGTCATGGTTTGGCTTGAGAAACCCATCACTACAGTCCTCTAAAAGCAGCGAAACCAATGGAAAATCACATATGAGCAATGGAAAGTCTGCAACTAATGGATACACTCATAATCATGACGACAATCACTACAGGGACTCTCCCAAAAGAAATGGATATCACAAACCACccaaatcacatccaaaatccCTCCCAGCCACAGAGAGTGTGGTGGTCTTTTCCCTCGGGCTGCTGGTTTTGCCCTTCATCCCAGCCACTAATATGTTCTTCTACGTGGGCTTTGTGGTGGCCGAGCGGGTGCTGTACATCCCCAGTATGGGCTTCTGTCTGCTCGTGACCGTTGGGTTGAGGAGCATGTTTGTTCGCTGCAGGTCGAGATGCTCCAGAGCGTTCCTGCTGAGCTGTGCTGCAGGTCTCGTGCTTCTCTACAGCCTGAAGACCGTGAGGAGGAACCAGGACTGGGAGAGCGAGGAGATGCTGTACAAGTCTGGCATTGCTGTAAACCCTGCTAAAGCTTGGGGTAACCTGGGTAATGTGCTGAAGAACCAGGGAAAGATGGCTGAGGCAGAGAGAGCATATAGAAATGCTCTTTATTACCGTGGAAATATGGCAGATATGCTCTACAACCTTGGTTTGCTGCTACAAGAGAGTGAGCGTTTCTCTGAGGCTCTGCGTTACTACAAACTGGCCATCGGGAGCAGACCGACTCTGGCCTCGGCATACTTGAACGTGGGCATCATCCTGGTCTCCCAGGGCAATATCGAAGAGGCCAAGCGGACATTTCACACTTGCGCTGACATCCCCGATGAGAACCTGAAGGACCCTCATGCCCACAAGAGCTCCGTCACCAGCTGCTTGTACAACCTCGGCAAACTGCTTCATGAGCAGGGCCAGCACGAGGAGGCGCTGTCCATGTATAAAGAAGCTGTCCAAAAAATGCCACGACAGTTTGCACCGCAGAGTTTGTACAATATGATGGGTGAGGCGTATATGAGGATGAATAATCTAGAGGAGGCAGGGCACTGGTACAGAGAGTCACTGAAGGCCAAACCTGACCATATTCCTGCCCACCTGACCTATGGAAAACTGCTGTCTATCATGGGACAGAAGTCTGAAGCAGAGCATTACTTCCTGAAGGCAATAGAGCTGGATCCTGCCAGAGGAAACTGCTACATGCATTACGGTCAGTTTCTGTTGGAAGAGTCTCGTCTGGGAGAGGCAGCAGCGATGGCTCAGAAAGCTGCAGAGCTGGACAGTTCAGAGTTTGACGTGGTGTTCAGCGCTGCTCACATGCTCAGACAGGCCAGTCTGAACGAGGCAGCTGAAAGGTATTATGGGAAGGCAGCTGATTTAAGACCTGGTCATCCTGCAGCTCTGATGAATCTCGGGGCGATTCTTCACCTTAACGGGAAGCTGAAGGAAGCCGAGAGCAACTACCTCCGAGCGCTGCAGCTCAAACCAGACGACCTCATCACTCAGTCCAACCTCCACAAACTCTGGAACGTCATGCAGAAACAGGGTCTGCGAGCCTCTGGGACGTGATCTGCTGCTGGGACTAATTCAGATACTTCTGGTCTGATTTCAGCTGGAGCTCTGTGCTGGTTCAGCGCATTGGTGGAACTGGTTAAAAGTTTAGCTAGTCTGGAGGAGGAGAATGACGATGGAGCCTCTGTGAAGTTGTGCTTTGGACAGTAAAGACCCTTATTAGTGTAAAAGAACAGTAAAGTGCACAAACACAGGAGAGAGGGTGACTGCATCACCCCGGATTGTATTCTTCTGAGAGCACTGACCATTTGGTtttgggtgatttttttttttttatgaaatgactcttaaaaataaaagtgttgagATTGTCATtatgttgatatttaaaatgcCTCCTCTTAATTTATTGTTGATGAATCAACAGTTTGTTAGGGTTATGAGGGTTGTTTATAGTACTCAATGTCTCCCATCACTCAGACCTCGATCTGTTATGAAGCactattattatgttttgtCTAATTTCAGGCttttaccaaaacattttaccaCAGTAAAATGTCTATTTGACCAGAAATAAAGAATTGTATTGCAAGAAATGACCAATTTCTCTTGTAGTAAGCATCGAGATGCTCTCTGCTGCCGTAATACAAGGACAAGACACTTATCGTGTCTGGATAAGTGTTTTTCTGCCTGCTATTGGAAGACTAACGCGTTACAGTTTGAGATGTACCTTACAGCCTTGATGTTTGCTGCCCTCTTGTGGTTGAGTAACGCACAAGTCCACTTATTTATTCTTGCTGTAGTGAATCAAAGCGGTTAACTTTAGTGTGCCATTTTTCTAACAATAATATTGGAACTGAAttgacatttagaaaatataataataataataataataataataatgctactGTAGGGTTGCAAATTTGTCAAATTTGAGAGTTTgcaaactatatattatataatttttttaatattttgtaattattaatgacGATATGTATTCctttgtttgaataaaa
>XM_043237963.1
TGCCAAACATCACACGCGTGTTGTGCGTTTGATAGGAGGGTGTTACTGCAACGGGATGTTTCACTACGGCTTTCTGGACGAAGAGCAGCCGAACACTCTCCGTCCGTTAGCGAAAGCACGCGGTGCGAGCAGATATGCGAGCTGAACCCACAGCTCTGGACCGAGAATGGGTTAGACATGTTTGAAACTCTTCCCATCTCGCCGCGGGAGCAAAACAATGAGGACGGCAGCGACCGGAGACGGGGACTGATCGGTGTCATTCATTCCTGGACTTTCTTCGCTCGTCTTTGTCGTTGAGATGATAGTGGAGCTGGTGTGCAGCGCGGTGGCTCTGCTCCTCTACATGAACACACTGAGCGCGGATTTCTGCTACGATGACAGAGGAAGAACATGAGCTTGCTAGTCAGTCTAGCATGGCTGGTTGGTTGGGGGATGATTCTTCTAGCAGCTCGCTTTTACTGGATGGGAAACAAACCTCCAAACTTTTCCAACTCTGACAACCCTGCAGCCGACTCGCCTCACTTCCTGACTAGAGCGCTCACTTTCCTGTACCTGCCAGCCGTCAATGCCTGGCTCCTCCTCTGCCCTGACAAACTCAGCTTTGATTGGTCAATGGATGCCATTCCTCTGCTCAGATCCATTGCTGATTGGCGGAACCTTCAGTCGGTTTTGTTTTACTCAGGATTCGCTCTCATGTCATGGTTTGGCTTGAGAAACCCATCACTACAGTCCTCTAAAAGCAGCGAAACCAATGGAAAATCACATATGAGCAATGGAAAGTCTGCAACTAATGGATACACTCATAATCATGACGACAATCACTACAGGGACTCTCCCAAAAGAAATGGATATCACAAACCACccaaatcacatccaaaatccCTCCCAGCCACAGAGAGTGTGGTGGTCTTTTCCCTCGGGCTGCTGGTTTTGCCCTTCATCCCAGCCACTAATATGTTCTTCTACGTGGGCTTTGTGGTGGCCGAGCGGGTGCTGTACATCCCCAGTATGGGCTTCTGTCTGCTCGTGACCGTTGGGTTGAGGAGCATGTTTGTTCGCTGCAGGTCGAGATGCTCCAGAGCGTTCCTGCTGAGCTGTGCTGCAGGTCTCGTGCTTCTCTACAGCCTGAAGACCGTGAGGAGGAACCAGGACTGGGAGAGCGAGGAGATGCTGTACAAGTCTGGCATTGCTGTAAACCCTGCTAAAGCTTGGGGTAACCTGGGTAATGTGCTGAAGAACCAGGGAAAGATGGCTGAGGCAGAGAGAGCATATAGAAATGCTCTTTATTACCGTGGAAATATGGCAGATATGCTCTACAACCTTGGTTTGCTGCTACAAGAGAGTGAGCGTTTCTCTGAGGCTCTGCGTTACTACAAACTGGCCATCGGGAGCAGACCGACTCTGGCCTCGGCATACTTGAACGTGGGCATCATCCTGGTCTCCCAGGGCAATATCGAAGAGGCCAAGCGGACATTTCACACTTGCGCTGACATCCCCGATGAGAACCTGAAGGACCCTCATGCCCACAAGAGCTCCGTCACCAGCTGCTTGTACAACCTCGGCAAACTGCTTCATGAGCAGGGCCAGCACGAGGAGGCGCTGTCCATGTATAAAGAAGCTGTCCAAAAAATGCCACGACAGTTTGCACCGCAGAGTTTGTACAATATGATGGGTGAGGCGTATATGAGGATGAATAATCTAGAGGAGGCAGGGCACTGGTACAGAGAGTCACTGAAGGCCAAACCTGACCATATTCCTGCCCACCTGACCTATGGAAAACTGCTGTCTATCATGGGACAGAAGTCTGAAGCAGAGCATTACTTCCTGAAGGCAATAGAGCTGGATCCTGCCAGAGGAAACTGCTACATGCATTACGGTCAGTTTCTGTTGGAAGAGTCTCGTCTGGGAGAGGCAGCAGCGATGGCTCAGAAAGCTGCAGAGCTGGACAGTTCAGAGTTTGACGTGGTGTTCAGCGCTGCTCACATGCTCAGACAGGCCAGTCTGAACGAGGCAGCTGAAAGGTATTATGGGAAGGCAGCTGATTTAAGACCTGGTCATCCTGCAGCTCTGATGAATCTCGGGGCGATTCTTCACCTTAACGGGAAGCTGAAGGAAGCCGAGAGCAACTACCTCCGAGCGCTGCAGCTCAAACCAGACGACCTCATCACTCAGTCCAACCTCCACAAACTCTGGAACGTCATGCAGAAACAGGGTCTGCGAGCCTCTGGGACGTGATCTGCTGCTGGGACTAATTCAGATACTTCTGGTCTGATTTCAGCTGGAGCTCTGTGCTGGTTCAGCGCATTGGTGGAACTGGTTAAAAGTTTAGCTAGTCTGGAGGAGGAGAATGACGATGGAGCCTCTGTGAAGTTGTGCTTTGGACAGTAAAGACCCTTATTAGTGTAAAAGAACAGTAAAGTGCACAAACACAGGAGAGAGGGTGACTGCATCACCCCGGATTGTATTCTTCTGAGAGCACTGACCATTTGGTtttgggtgatttttttttttttatgaaatgactcttaaaaataaaagtgttgagATTGTCATtatgttgatatttaaaatgcCTCCTCTTAATTTATTGTTGATGAATCAACAGTTTGTTAGGGTTATGAGGGTTGTTTATAGTACTCAATGTCTCCCATCACTCAGACCTCGATCTGTTATGAAGCactattattatgttttgtCTAATTTCAGGCttttaccaaaacattttaccaCAGTAAAATGTCTATTTGACCAGAAATAAAGAATTGTATTGCAAGAAATGACCAATTTCTCTTGTAGTAAGCATCGAGATGCTCTCTGCTGCCGTAATACAAGGACAAGACACTTATCGTGTCTGGATAAGTGTTTTTCTGCCTGCTATTGGAAGACTAACGCGTTACAGTTTGAGATGTACCTTACAGCCTTGATGTTTGCTGCCCTCTTGTGGTTGAGTAACGCACAAGTCCACTTATTTATTCTTGCTGTAGTGAATCAAAGCGGTTAACTTTAGTGTGCCATTTTTCTAACAATAATATTGGAACTGAAttgacatttagaaaatataataataataataataataataataatgctactGTAGGGTTGCAAATTTGTCAAATTTGAGAGTTTgcaaactatatattatataatttttttaatattttgtaattattaatgacGATATGTATTCctttgtttgaataaaaatg

Function

symbol description
tmtc2a Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in brain; neurons; otic placode; and pharyngeal arch. Orthologous to human TMTC2 (transmembrane O-mannosyltransferase targeting cadherins 2).

NR:

description
PREDICTED: transmembrane and TPR repeat-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237962.1 True 3794 mRNA 0.49 12 5126804 5156734
XM_043237963.1 False 3206 mRNA 0.47 11 5126801 5156735

Neighbor

gene id symbol gene type direction distance location
LOC122342827 LOC107745014,LOC107571041,LOC107745015,LOC107656208,LOC107743921,LOC107656210,LOC107565660,LOC107571048,LOC107704613 coding downstream 23900 5100364 ~ 5102901 (-)
LOC122343475 LOC107656210,LOC107739149,LOC107704613,LOC107733017,LOC107745022 coding downstream 43126 5077652 ~ 5083675 (-)
ppfibp1a LOC107658795,LOC107592195,LOC107745009 coding downstream 103210 5009871 ~ 5023591 (-)
LOC122343386 si:dkey-153k10.9,kiaa1324l,LOC107658817,LOC107656294,LOC107743973 coding downstream 168992 4946717 ~ 4957809 (-)
hsp90b1 hsp90b1,LOC107658810,LOC107726017,LOC107656288,LOC107743417 coding downstream 273127 4847862 ~ 4853674 (-)
mettl25 mettl25,LOC107656206,LOC107589640,LOC107658709,LOC106600310 coding upstream 4375 5161110 ~ 5170510 (-)
LOC122343476 LOC107573509,LOC107589730,LOC107656205,LOC107560711,LOC107571041,LOC107656209,LOC107571048,LOC564807,LOC107658713 coding upstream 15830 5172565 ~ 5180099 (-)
LOC122343478 LOC107715531,LOC107560711,LOC107656209,LOC107571041,LOC107656205,LOC107656210,LOC107571048,LOC107574393,LOC564807 coding upstream 26732 5183467 ~ 5189265 (-)
LOC122343482 LOC107757207,LOC107690654,LOC107758319,LOC107690655,LOC107574392,LOC107575819,LOC107573508,LOC107698248,LOC107573509 coding upstream 40311 5197046 ~ 5201684 (-)
LOC122342834 LOC107690655,LOC107758320,LOC107745022,LOC107758319 coding upstream 44873 5201608 ~ 5205321 (-)
G26226 NA non-coding downstream 2286 5124068 ~ 5124515 (-)
G26225 LOC107715531,LOC107690654,LOC107715130,LOC107574393,LOC564807,LOC107577060,LOC564948 non-coding downstream 4051 5122472 ~ 5122750 (-)
G26121 NA non-coding downstream 117803 5008626 ~ 5008998 (-)
G26109 NA non-coding downstream 180740 4944128 ~ 4946061 (-)
G26100 NA non-coding downstream 198096 4920573 ~ 4928705 (-)
G26228 NA non-coding upstream 2350 5159085 ~ 5159407 (-)
G26237 NA non-coding upstream 83596 5240331 ~ 5241780 (-)
G26270 LOC107754060,LOC107562295,LOC107694310,LOC107560735,LOC107757236 non-coding upstream 185763 5342498 ~ 5344870 (-)
G26271 NA non-coding upstream 190050 5346785 ~ 5347055 (-)
G26281 NA non-coding upstream 230031 5386766 ~ 5389185 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other downstream 32161 5085090 ~ 5094640 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other downstream 368974 4731224 ~ 4757827 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other downstream 859306 4264926 ~ 4267495 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other downstream 964973 4133977 ~ 4161828 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 1508434 3602356 ~ 3618367 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 562277 5719012 ~ 5720250 (-)
G26408 NA other upstream 573283 5730018 ~ 5736946 (-)
G26414 LOC107560737,LOC107690649,LOC107757234,LOC107589816,LOC107694311 other upstream 693669 5850404 ~ 5853366 (-)
G26462 NA other upstream 750020 5906755 ~ 5913538 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other upstream 781320 5938055 ~ 5940015 (-)

Expression


Co-expression Network