cpsf6 (cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007)


Basic Information

Item Value
gene id cpsf6
gene name cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 75381 ~ 86610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237975.1
GCTTCACGTTTCGCCGTCTCTTCTTCACGCGCAGCGCGAGCACAGTGGAGGAGGAGGGAAACAGAAAATGGCGGACGGTGTCGACCACATCGATATTTACGCCGATGTAGAAGAGGAATTTAATCAGGAATCAGATTATCCTGTTCATGAGCAGATTGACCTGTATGATGATGTCATCTCACCATCTGCCAACAACGGAGACGCACCTGAGGACCGAGATTACCTGGACAACCTGCCTGCCCCGGGAGGATCCGAGGGGAACAAAGGCGCTCCGCCAAACGTCGTCTACACCTACACTGGCAAACGAATCGCTCTGTACATTGGCAACCTCACATGGTGGACCACTGATGAAGATTTGACCGATGCTATTCGCTCAATAGGCATCAATGATGTGCTGGAGATCAAGTTTTTTGAGAATCGAGCAAACGGCCAGTCAAAAGGGTTTGCTCTGGTCTGCGTGGGGTCAGACTCCTCATCCAGGAAGCTGATGGACCTGCTGTCCAAACGTGAGCTGCATGGACAAAACCCGATCGTCACTCCTTGCAACAAACAGTCTCTCAGCCAGTTTGAGATGCAGTCGCGAAAAAGCACACAGTCCGGGCAGATGTCCGGAGAGGGGAAGGCAGGGCCTCCGGGCTCAGGATCTCGTAGCGGCTTCCCACTTGGCAAGAATCGAGGACGCTTTCCCACCCCACCTGGCCCGGGAGGAGACCGCTTTCCTGGACCAGTTGGACCTGGTGGACCTCCGCCACATTTTCCAGGAATGCAAGGGCCACCCCGTCCTCCCTCTGGCCCACCTGGGCCTCCAGGACCCCCTGGGCCCCCTCCACCTGGACAAGGTTTGCTGCCGCCCCTCGGAGGTCCTCCAAACAGAGGAGACCGTCCTCCTCCACCCGTCATGTTTCCTGGTCAGTTTGGTCAGCCTCCTATGGGTCCGATGCCTCCTGGCCCACCCCCACCTGGATACGGGCCTCCCCGGCCCCCTCCACCTCAGCAGGGTCCGCCCCCTCCGGGACCCTTCCCACCCCGTCCACCTGGGCCCTTAGGACCCCCACTTGGCCTTGCTCCTCCACCTCACATGCAGGGACCCCCCCCTGGAGGTCCACCTCCGGCTCCTCACGTCAACCCGGCCTTCTTTCCACCACCTGGAAACAACAACATGCCATCGTCCGACAGCAGGGGCCCCCCGCCGGGTGAAATGTATGGCCGCCCACCTCCATACGACAGAGACTATGGCCCTGGCGGCAGgGACATGGATTCATCTCGTGCTCCTCTGAGTGAAGCAGAGTTTGAGGAGATCATGAATCGCAACAGAGCTATCTCCAGCAGCGCTATCTCGAGGGCAGTATCGGACGCGAGTGCAGCGGATTACGGCAGTGCTATAGAGACTCTGGTGACGGCCATCTCCCTGATCAAGCAGTCGAAGGTTTCTGCTGACGACCGCTGCAAAGTCCTCATCAGCTCCCTGCAGGACTGCTTGCATGGAATCGAGTCCAAATCCTATGGTTCTGCATCGAGCAGACGGGAACGTTCCAGGGAGAGGGACCACAGTCGTTCTCGTGAGAAGCATCGACGCAAGTCTCGCAGCCGAGACCGACACGAGGACTATTACAGAGAGCGCAGCCGTGAGAGAGACCGTCATCGTGAGAGAGACCGCGACCGTGACcgcgagagagacagagaacgTGAGCGGGAGTATCGCCGTTAGTTGGAAAGGAAGGTGTGTatcctgtttgtttctgtcgtttgtttgtttttctccccTCTTCCTTCAGGATTCAGATGTGCTTACATCTTATCCTGCAGAGGTCGGGATCACAGGTACGTGATCAGAAAAGGTGAGCCCCTTAACCTATAATGTAATGACAAgtactgtcatttttttatttttatttttccctacAGCTAatctatttttttccccttttatttaCGAATGTAGCGTGAACTGAGTACGCTGATTCTTAAAACCTTTGTGCCTGGTCTTGAAGCCGTTTAATGTGCAATATCAGCACCAGCAACCATAAACTGTCCCACTGTTGTATTGATAACCTGTCTGTCTTTTGAAAGATTAtgtatttcaacatttttataaaaaaaaaaatcaaaatgcatttgcattttaaaatgcaagctACAGCACTTATTTGTCCATTTAACTGGAATTTGCTGCTACTTTTGAGACTCTGCAAATGTCAAACAACACTTTCCTCCTCATTTTGACTAATTGTTTGACAAAAAACCTAATTCAGGATGAGTGAAATATAAATTCAACGTGTGACCATAAATGTATAGAAGTTTGATTTGAGAGAAAATGAATGTATTGAAATGAGCAAAATTGTTTCTCAGGCTGTGCGTTCTTGCAGGCAGATTTGATGTTGATAATTATTGTTCTAGTGTTTAGTTCCTCTCTGATTTGTTGTGAAAAGCAAATGAATGGAGTGGAGTTGATCTGCTTTGGCATTTATAAACATGAAGCTAGTCGTCTTATCAGGTTGAGTTGTCATGGTGTaggcaaattaaaattttcatgtGTATGGTTTAGTCCTGAACACATCTGTACAGTAACTTAAGAAAACGCTTTCTGAATGTCCAGAACAAGCtaaatgtatttgtactgtAAAGGGTCATCGTCTGCATCCTAGTATGTCGCATTTGTAGGTTTTAATAGCTAGTCAAACTTCTCCATCGTTTTCTTATCTGAATTTGACATTTTCCTGGTTTACATAccgttattcatttattttccatatttaatgTTACGACCTCTTAGATGCTGCACATGTAGCAGTTCttcactatttttttgtttatggcgttaaatgttaaaataaaggtAGATCTACAATGTCAGTTAAACcagttttgcttttcattttatcatttactttAATGCTAAACAAATGGAGAAGAACTGCTATATTGCTTTTCCAGAGACATGTgaacatttttagcttttttaacactgtttttttacactcatgtttgtgatttttaaaatgcagcatatttaataaatattttcacaatcagtatttaaattaatgcagCACATGTCCTCAGTTCAAACCCTGTTGGTCTGATTTTTAGACTCGTTTTACTGTTACCTCATGGCTCTGCTGTGTGATGGTGTTCCTACAGgctaaatttgtatttaaatgtaaatttgtgcATAATTTGTATGTAAATGCTGAGGACACTGTAATATCGTGTGTGATGCATTGTGAGTGACCCCACATATTCTAGATTTAGATGAAAACCGTAACTCCGGTTTAGCAGATAGATTGTAAATGCCCAACTTTGTTAGTTTTGTTGAATGTAATTCTGGTAGCCTCCAAATTGTTGTTCTGGCCTCTTATCAAAAAACTGCCATTTATTcaggtgttttgttttatttttgtttttctgtgttctcAATTGTACAACCTATAATTGCAGTAACACCATTCAGGGAAAGTCAGCAATGCACAATTTGCAATTTTGTTCCGCTGTTATTAACTCAGAAATTGTTGCACTTTTAAAGTATGCATCTGGTTAGAAATTTTGAATAGCTCTTAACCACTGCAAACCATTGCGTTAGAGCCCTGTTTTGTGGGATTTATTGGGATTTTTGGATGTAGTGTCTCTGTCTTGAATGCATCTGCAGAAATGACTGTGTTTCCAGGTTATTTGTGCAGGTTTTTCTGAAGTAATGGTCCTCACGTGGTATTAATCGCAGCCCTTTTCCTCTGTTCAGTATTGTGCTTCTATAAGATGTTGTCACAGGATTGGACAAACTtgtttttgtgagtgtgttACTAGTATTAGTAGTActagtattattttaattccaaACACAAACTACACCGTTAACAAATTCAGCGTAAGAAGCTGTATGTTAATGTCTAACTTgctaattatttctgaaagatcttGTACTAAAATGGGCTGAAACACCTATAAATGACTTAAGACACAATctaatgttttaataacaaaCCACGTCTTCAGTACTTTTTGTGTTGTCTATCTTTCTTGACCGGCAGAAGGGCAAAGTACTATTAGTCGCTGAATTTTGTCCAACCCTGTGTACTGTAACTCTAGTGTCCACTGAATCACTAGAATCAAGCAATTTAaacttttcttccttttcttgaACTCTTAGACGTTTCATTTGCTCAGTAGAACTGATGCATGAAATGGTAAACAATTAAACGGATGCTTTTAGCAATGGGAGTGGACCAAAtctgaaatattgatttgatgcTTGTTCTCAGAGGTAAAGTGGACACTATGGGGGAAATATTAAGagttaagtgttttttgtttgttttttttcctgttgtagaaaaaaagaatgcacATTAGCGTTTctaatttgtttaattgaaGCTGAATAACTAGTTAAATGCACTAAAAgaattttaattcagtaaaagccaacataaaatgtgttttttaaatgtctgtatcTCGCAGTTTATTATGTGGACTTGTCCATGACTGAAGCATTAATTTTTCGACGTGAAACCTTTTAGATGTGGTGTTCCATAAGATAAAGAGATGacgtttacaaaataaacagattaagTAATCGCATCTGCTTATATAATTGAGATTTAACTGTGAtattgaatagaaaaaaaactaaactcaaaATAATTGCTAGTTAACCTTGTTTGATGCCACAAGATATCGTACATGTTTTACATTGAGATAAACCAATCAACCAAAACAATGTCGATCAGTATCATAATATAGGGAGTTTTATGCAGTTAATGTCCATAACCTCTTCTTCTACAGATCCAGCTCATGCATGCACTTTTTCTGTACTTCACTGCAATGAATTGCGGTTTTTCATCttcaatattaaattttttatccTCTCATCTTGTTGCAACCTGTATCAATTTGTTTTGAACTTTGATTAAAATGTACCTTTAATACAGATGCtgatttgtatgaatttgttttGGTTGGTTGATTTCTCAATGGGACTAAAAGCCACCTATTTTCATATGAATCTATTAATGCATACTTTGCCAATTGGTCAACTCGTGAATTACAGTTTTTGATGTGGGTATTGTGAATACTATACATTTATCATTGTCATGGATGAATATTAGACGTCAGACATGATTAATTGCTAATgatgattttaaagaaatggttcaTCCAGAAATGAGCATTTGCTCAATGTTCACTTTTAAGCCATTCATGATGTGGTTGagttttcttcatcagatctggaggaATGTAGCGTCACtcgctctgcagtgaatgggtgccgtccgaatgagtttgtttttatcagctgtttggaccctcgttctgacggcacccattcactgcagaggatccattgctgAGCGAGTGATGGAAAGCTACGTTTCTCCAAACctgatttaaaaactaaactcTACATATTGGACAAACTCTTTCATTCCTGGTTAAACTAGTTCTTTTTGTCCTTCAGAGTGAAAATGACGTATTTGCAGAGTTGTGGTGTTGAGTACAGTGTTTCATAGTTGTGCATGCCAATGTCTTTTTATGATTGTCGTCTCTTTACACTGTATTTATCCACTGAATCCAGGGGCTTGGTTCAAATACAGTGGTCGTTTTAATGACTGCAGTTAATGTTGTACTTTTTTACCAAATTCTGTGCTTTTGTGAAAcgacaacattttaaatattgctttagTCTTTTACAGTAGTCGTTACTCTATGCCCCTTAGTTTGATGCTGTTGAGAAGTTGTTTGCATGCCTGTGTATGTCTGGGACGGTCTGAGCGTGTGTAGATGTAGAGGGGAAaagcagctgtgtgtgtttctgggtTCTGTGCCCCAAAACAAACTGCCACCTTCGTTTTGACACCTTTCAGCTGAACgcaagaggaggaggagagacgtCAGGAGCAACATGGATTCATCCGACAGCGTCCCGCATCGCACCGTCACGGAGAACGCCGGACTCCGGACACACTCTGCAGTGCTGAAGTAGAgttctgtaaaatattatatactcACTCTTAATTCCCAAcagctctttttatttttgagttttatttgGAAGTAGCTGTGTGCTAAAGTCAGTTCAGCGAAAGAATTATTTGCCTGCTTGTTCgaaacacaaaacaactttCCCACTGCTATAATGTTGTAAATGGTCAGTTAGctagatttgtttttataggatttttttttttttcttttctttttttggtttcatgtttcttccctttttttcccctcgtCCATATAATGTTTGTAAGTGTCTTTTTGCCTTGATTATTAAATAGAATCTGTGTTGTAATAAAGTGTGTACTTGTTGCTTGTTCATACTTGATCTGCTAGTTTAGGTTACTGGGTTGAACATTTAGCTAGacattgctttttatttgttcagaattgcatacatttattttcaacttgTCCTGCTTGGATATCAGAATAATTGGTTTGAGATGCCTTTCAGGTTGTTTGACATCTTTCTATAAACATTGTGCCTTGTCCAATTTGGGTTAATTTTAAGAGATTGAGCACAATCTGTTTTAATTCCTGTTCATTCCAAATTAATTGCCACTTCCTGCAGGGTTGATTTGTCATAGTTTATTGGATTTCATGACtgtgattggagctgtgcaaTTCAAATCTGTGAAACCGTGCTCAATTTGTAGTTTGTCAAAATAATGAATCTTTTATGGCTAGGAAATTATAGAGCAAAATATCCTGCGTTTCTAATGTCTAGCAGACGTCCCTGCTTTGTTTTGTGTACATACCAagtctttgtgtgtttgtaggatTTACTGCAATGTCTCTCAAAAGGTCTCTTGTTTGATTCTGATATAGTTAAAatttgaaggaatagttcacccaaaatgagaATATATCCGTCCTCAAGCCTTCCAAGATGTAGAggagtgtttttttcttaatcatATGGAGAAATCTAGCATCATTTTGTCACCTGTGAATCCTCAGCTGTTTAGAGGTTCTTTCTGACTGCACACATTCACCGGTGAGCAAGTGATTGAAcgctacatttctctaaatctgataaagaaacaaacatttaatacattttggatGCTCTGAGGGGGGAGTAAATTAAGCACATTTGTGACCCTATtccttttaagttttaatagGAATTTGTTCTAATTCATTGTGCAGTTTCCAATTTTTATGTAGACTGCTTACGCAGCTGTTTTTCTAGTGATGTAATAAGCAGTGTTTCCACTTGCACGTCTGTAAGATGATCTCTgcttactgtaaatattcatgcactttattttgagacATTTGAGAGATGTACTTCTGGGTATTGGACACATGACCTGTGCATCGGTCACTTTGCATCTGTTTGAATGAAAGATTAAGGTTCACGTGAGCTCAGTTATCTGCCTGAGCCTGTGGGCTTTCTATTGCTGTGTTTGATGGTGTATCACTGTAGTTAGAGCAAGTTCATTGGAGTAATTCTAGTGGTTCTTCAAACCGCATCCTCTGCTAGTGAAGAGGACAGACATCGATATTGTGGGTTCCTGTTCCCTCATAAACATCCGGACTGAGAGGTAAGTCCGTTTTTGCCTTTCAAATCTTACAGAAATCGGTACACTTgtgtattttgtagttttttgtgtttttgtagccCAGAGCATTGCAGCTTGTTTACAGCTCAAGTTTATTCAGGTTTTGCTGCTTGACGTTCTCCTGAAGCGGTTCCTTTATTGTACATTGATGCAGTACACACCTTTAAGTATTCATGATTGATGTGGGCTACCTGATGTAATATATTCagatttactattaaatatttttgccaaATCAATAAATTTTTTTCCACACTA

Function

symbol description
cpsf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 6 isoform X1

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237975.1 True 7826 mRNA 0.41 10 75381 86610

Neighbor

gene id symbol gene type direction distance location
kcnc2 kcnc2,LOC107555885 coding upstream 49393 136003 ~ 171334 (-)
ccdc107 ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866 coding upstream 90663 177273 ~ 184430 (-)
krr1 krr1 coding upstream 113201 199811 ~ 205364 (-)
phlda1 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 coding upstream 163531 250141 ~ 252421 (-)
nap1l1 nap1l1,LOC107656454,LOC107555881,LOC107658961 coding upstream 166656 253266 ~ 267765 (-)
G24713 NA non-coding upstream 104786 191396 ~ 194159 (-)
G24712 NA non-coding upstream 119283 205893 ~ 208820 (-)
G24724 LOC107555883,LOC107708011,LOC107658963 non-coding upstream 125995 212605 ~ 213246 (-)
G24792 NA non-coding upstream 518273 604883 ~ 605114 (-)
G24795 NA non-coding upstream 525781 612391 ~ 612843 (-)
si:dkey-97m3.1 NA other downstream 1700 47610 ~ 73681 (-)
LOC122343420 wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727 other downstream 41454 19991 ~ 33927 (-)
G24689 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107711503 other downstream 64280 10833 ~ 11101 (-)
G24708 NA other upstream 99850 186460 ~ 191242 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other upstream 193388 279998 ~ 341953 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other upstream 320032 406642 ~ 496868 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other upstream 778074 864684 ~ 933108 (-)
G24875 NA other upstream 982550 1069160 ~ 1070096 (-)

Expression


Co-expression Network