LOC122343493 (LOC107726837,LOC107748473,LOC107689714,LOC107584715)


Basic Information

Item Value
gene id LOC122343493
gene name LOC107726837,LOC107748473,LOC107689714,LOC107584715
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13652525 ~ 13665137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237995.1
ACACGGTGTGTAGTCCAGATTGTAGCGCTGCGTGACGCCGCACAGGACACGCCCCCTCCGCTCCTCGCGGTCCGCTCCTCCAGAAGATCCCAGCAGTCTGCACCAGCGCTCATGTGAGGGAGCCGCCGCAAACTTTGgctAACTTTCCTGTTCAAAGAGAGGCACATATCGACTGATAAAGGCCATGGAGGAGAGTAGAGATGGAGGCGTTACTGATTGGGAAGCTATGGTGCCGGAGGGCCAGAAGGAGAGCGCCGAAAAAAGACCCGAGGCCAGGGAGAAATGGGCCAATAAGACCGAGTTCCTGCTGTCCATGGCTGGAGAGATCATCGGCCTGGGGAACGTGTGGCGCTTCCCTTACCTGTGCTACAAAAATGGAGGCGGTGTTTTCTTCATCCCTTATTtcatctttctcttcttttgtgGAATCCCGGTATTTTTCCTTGAGACGGCATTAGGTCAGTACACCAGCGAAGGGGGCATCACTGCTTGGAGAAAAATCTGCCCCGTGTTTGAAGGTGTAGGTGTTGCCTCCCAAGTTATAGTGATTTACCtcaatatatattacattgtaGTCCTGGCCTGGGCTCTGTTTTATCTATTCAACTCTTTTTGGAGCACTCTACCTTGGACTTCCTGTGACAATTATTGGAACACAGCGAACTGCCACAACATAAGTGCTACGTACACAGGTATACACAGATCTGACACTGACTGGTCTTTCCTCTACAATGAAACAGATAAATTCGGTGACAACTACAGCATGAGTTTTCAAAATGAATCCGAATGGCCGCCTTTCAAACTGATCTCCCCAGAACAAGAATACTGGTTCCATCGTATGCTGCGGGTGGCGAACAGTGGTGGTCTTGGGAGTGTAAATGCCGATCTTGCCATGTGTCTTCTTTTGGCTTGGGTCATCTGTTATTTCTGCATCTTTAAAGGAGTCAAGACCACAGGCAAGGTTGTGTACTTCACTGCTACGTTCCCCTACTTAATGCTGTTCATCCTTTTTATCAGAGGCGTTACTTTGCCAGGAGCCGCAACTGGAATTACTTATTATCTGTATCCTGATATCAGTAAACTCTCTAATCCTGATGTATGGCGTGATGCAGGCACTCAGGTGTTTTTCTCCTACGCTGTGTGTCAAGGAGTCCTGACAGCGCTGGGCAGTTATAACAAATACAACAATGACTGCTACAAGGACTGCATAGCACTTTGTATTCTGAACAGCTCCACCAGCATCTTTGCTGGATTTGTTGTCTTTTCTATTCTGGGGTTCATGGCCCATCAGTTAGGCGTACCCATGGAAGACATAGCATCATCAGGTCCTGGACTAGCTTTCATAGCATATCCTAGAGCCCTCGGTCTGTTACCTGGACCCCAGTTCTGGTccgttcttttcttttttatggtACTTCTTCTGGGCCTTGACAGCCAGTTTGTGTGCGTGGAGAGTTTAGCCACCGCTCTCACAGACCTATTTCCTGGAGTTCTAAGGAAGCGGCGGGAACTTTTGGTGTTAGGAATCGCCGTCATCTGCTTCTTATTGGGTTTGCCATTCATCACAAAGGGAGGCTTCTATCTGTTTACTGTGATGGACACCTATGGCCCGAGTGGAACTAATCTGCTCTTTATTGCCTGCTTTGAGACGATTGTTGTTGCGTGGGTTTATGGTGCAAACCGTTTCTATGACAACATTGAGGATATGATAGGATACGCACCATTTCCTGTGCTGAAGTACTGCTGGCTCTTCATTACCCCTCTCATCTGTGCTGCTACTCTGCTGTATAACCTGCTGGGTAGTAAATCTGTGTCTTCTGCTGATCAGTTTGTGCCGGACTGGAGTTACAAATTGGCACCTTTGCTCACAGTCATTCCTATGCTTTGCATCCCAGtcttcttgtttttctctttggGAAGGGGTCGTGACCTCATCACTCCCTCTAGCGACCTGAAACAGCTCCGACCAAACAGCCCACGCCTCACGCTGTTTAATCGCGTAATCATTAAACCACAGAGAACTCAACACATTCAGGAGGACGGAGAAGAGAAAGCAAGCAAAGAGCACACCAGTGGAGTTTGAGAAGGCAGAATGATGGCTATATATTATAGAGCATATAGGACTTTGtatcaaataaaatctttggaTAAAATCAGTTCAtctaaatataaagtatagtATATTAGATTTCTTGACAATGCATTTCATGACAGTGTATGAGACTGCTATTACTCAGGAGGTCAAATGAACAAAAGGTTCAGCTAGAATTTTGACTGTGttaatatgcataattaaagggattgttcacccaaaaaaaatgtaatataagatTTATCTAAGATTTAGGTGACTTCtcagtaaaacagtaaataactaaaactttgGTCCTTGGTGATTCAGAAAATGCAAATCACCCGTTTTTGAGAATAAAAAGCATATCAAGGAACACAAAATTAATATCCCTGGCTACTgccaaaaacagaaatattaacattttttgggagaactgtccctttaagagtaCTGAGTACTgggaactgtccctttaagagtaCTGAGTGTTTTTTATGAGTCTTCTCAGGAGAAATTAAACTGTTTGTATGAGTTCAAACTAAGGGTTAGTGCAGCTGTAATTGTATAATATGAAATTTATATGACTACTCTATGAGAAATAGAGTTCATGTATGGTGTAAATTTGTCTCATTTACTTTTGTCATCTCTCTCACGGTATGAatacagattgttttttttaatttctcaaaaTTTAGTCATTATATTTAGCATTCTTCAGAACCTCGTAATActcataatgtatttttaactaGACTTCTCTGTACCACTTTTATTAATGCCATTGTagtttttgatacattttattaaacatactgttctttctttttt

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237995.1 True 2902 mRNA 0.43 16 13652525 13665137

Neighbor

gene id symbol gene type direction distance location
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding downstream 4476 13635613 ~ 13648049 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding downstream 139121 13502936 ~ 13513404 (-)
st8sia1 st8sia1,LOC107748471,LOC107755164,LOC107567669 coding downstream 158098 13484786 ~ 13494427 (-)
si:ch211-244b2.4 NA coding downstream 182176 13466028 ~ 13470349 (-)
si:ch211-244b2.3 NA coding downstream 186852 13461043 ~ 13465673 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding upstream 9134 13674271 ~ 13679088 (-)
LOC122343316 NA coding upstream 18088 13683225 ~ 13687640 (-)
LOC122343398 LOC107726825,LOC107584742,LOC107689735 coding upstream 37246 13702383 ~ 13708079 (-)
slco1e1 slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035 coding upstream 43655 13708792 ~ 13717223 (-)
slco1d1 LOC107689241,LOC107597003,LOC107584712,LOC107689720,LOC107689242,LOC107726840 coding upstream 53467 13718604 ~ 13729434 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding downstream 39754 13610216 ~ 13612771 (-)
LOC122342564 NA non-coding downstream 308268 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 332777 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 400491 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 407137 13242506 ~ 13245388 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 155559 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 201640 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 204285 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 214894 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 216168 13881305 ~ 13882012 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 219822 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 290587 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 465635 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1163344 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1636758 12014631 ~ 12015767 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 27334 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 150437 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 310220 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 490355 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 1022736 14687873 ~ 14704622 (-)

Expression


Co-expression Network