pyroxd1 (pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716)


Basic Information

Item Value
gene id pyroxd1
gene name pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13674271 ~ 13679088 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237997.1
CAACGCTCTCCGTAGTCCGCCGAAAAAGGTAAACACGGAAGTCCAATGACTAAATATAGCGTGGATGAGATTGCTCTTACTGCGCGTCTTTTTAGTGATTCGCTTGAGTATAAATATCGACTAAGcgtaaaaacagacaaacagctATTTTATTAAGTGTGCTGAAGTTCAATGGCTTCAGTTAAGCGAGTCGCGTTCGTGGTCGTCGGCGGAGGAATCGCCGGGGTAACTTGCGCCGAACAGATCGCGTCGCAGCTCTCATCGGACGAGGTTTACCTTCTGACCGCATCGCCCTTAGTAAAGACGGTTACAAATTTCAAACAGGTGTCGAAGACGTTGGAAGAGTTTGAAGTCGAGGAACAGCCGTCCAGCGTTTTAGAAGAAAAGCACCCCAACTTGAAAGTCCTGCGGTCCGCAGTCAGACTCCTGCGAGCTGAAGAGCACCTTTTGCTAGCGGAGAACGGCCAGACGTTCCGTTACAAAAAGCTGTGCATCTGCAGCGGAGCCAAACCCAAGCTTCTCGCCCGGGGTGACCCTCGTGTGCTGGGCATTCGAGACACGGACAGCGCTCGGGAGTTTCAAAAGCGGTTGTCGAAGGCTAAAAGGATAGTTGTCGTTGGCAATGGAGGAATCGCATTAGAATTGGTGTACGAAGTCGAAGGCTGTGAAGTGATCTGGGCTGTAAAGGACAAAGCCATAGGAAACACGTTCTTCGGCGGAGCTGCTCAGTTTCTCATTCCCTCACTGGAGGCTGACCAAAAAGAAAGATCTTTGCCATGCAAGAGAGCACGCTACACGACGGACAAGACTGGAGCAGGCCACAGCGGGGCTTCAGGAGAGCTTGGTAGTGCCTTGGGTCCAGATTGGCACGAAGGGATTGAACTAAGAGGAACAGTGCAGAATTCCAGTGGAGTTCATATAGAATATGAGTGCGAGGTTGACAGGATCTACACCCAACAAGAGTTTGCGGAGTCTAAGCCCGACACACAGAATTCGGAATTagggttGTGGCCGGCGTATGTTCGGTTAACCAATGGGAAGATCTATGGCTGTGATTTCGTTGTCAGTGCAACAGGCGTCGTCCCAAACACTGAGCCTTTTCTCAGTGGCAACAATTTTGAATTGGCGGGAGATGGTGGTCTGAGAGTGGACGATCACATGCGGACGTCTGAGCAGGATGTGTATGCGGCTGGAGATGTGTGTTCTGCTGGCTGGGAGCCCAGCGCTCTCTGGCAACAGATGCGACTGTGGACTCAAGCGCGTCAGATGGGCTGGTACGCGGCGCGCTGCATGGCCGCGGATGTGCTGGAGAAGCCTATAGAGCTGGACTTCTGCTTCGAGCTCTTTTCACACATCACCAGATTCTTCAACTACAAGGTGGTTTTGCTAGGGAAGTATAACGCTCAGGGATTGGGTCAGGACCATGAGCTTCTTGTGCGCTGTACAAAAGGCCAGGAATACGTGAAGGTGGTCCTGACCGGGGGCCGAATGGTGGGAGCCGTTCTTATCGGAGAGACGGACCTGGAAGAAACGTTCGAGAACCTCATTCTCAACCAAATGGACTTATCCCGATACGGCGCGGAGCTTCTTAATCCTAATATTGACATCGAAGACTACTTCGACTGAATCGTTCTGGTCAGTCAGCGACAAAGAAGacgattcatttattttttaaagccgCACCACGTAatttatgttcaaaaataatcatttcttTCAATCACCAATCGTACGCTGGCATTGCTCGGTAACAAGAAGTCCCACCTTTGAGGCGACGCTGTCATGCTGAGAAGGCAAATAAACCCATTGcgatttttgtttgaaaaataagCACTTCCTGTTACCTGAAAAGGCATTTTGGGATCAACATCCTCCCAGTGTGCCGGAAGGAGAATTCTCATCACATTTGCATCTGTTACGCAAAACGTATGCAAGGttggtttctctttctctgtttgatTAAAAAGGGTTAGACATTAAGGGTTAGACATCTAGGGTTAGACATTAAATCAACTCTCTCAACTCATTAACTCAACCTTGTAGTACCAGTACCATGGTGTGTCTGTGTCCACATATTCAACTTCTGAACCAGACATCAGAGAAGAAGAATTTTAGCTGAAAACTCAA

Function

symbol description
pyroxd1 Predicted to enable oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor. Predicted to be located in nucleus and sarcomere. Is expressed in female organism and trunk musculature. Human ortholog(s) of this gene implicated in myofibrillar myopathy 8. Orthologous to human PYROXD1 (pyridine nucleotide-disulphide oxidoreductase domain 1).

NR:

description
pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K24426 PYROXD1; pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237997.1 True 2127 mRNA 0.49 13 13674271 13679088

Neighbor

gene id symbol gene type direction distance location
LOC122343493 LOC107726837,LOC107748473,LOC107689714,LOC107584715 coding downstream 9134 13652525 ~ 13665137 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding downstream 26222 13635613 ~ 13648049 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding downstream 160867 13502936 ~ 13513404 (-)
st8sia1 st8sia1,LOC107748471,LOC107755164,LOC107567669 coding downstream 179844 13484786 ~ 13494427 (-)
si:ch211-244b2.4 NA coding downstream 203922 13466028 ~ 13470349 (-)
LOC122343316 NA coding upstream 4137 13683225 ~ 13687640 (-)
LOC122343398 LOC107726825,LOC107584742,LOC107689735 coding upstream 23295 13702383 ~ 13708079 (-)
slco1e1 slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035 coding upstream 29704 13708792 ~ 13717223 (-)
slco1d1 LOC107689241,LOC107597003,LOC107584712,LOC107689720,LOC107689242,LOC107726840 coding upstream 39516 13718604 ~ 13729434 (-)
LOC122342857 LOC107689242,LOC107584712 coding upstream 57517 13736605 ~ 13748988 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding downstream 61500 13610216 ~ 13612771 (-)
LOC122342564 NA non-coding downstream 330014 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 354523 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 422237 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 428883 13242506 ~ 13245388 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 141608 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 187689 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 190334 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 200943 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 202217 13881305 ~ 13882012 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 241568 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 312333 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 487381 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1185090 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1658504 12014631 ~ 12015767 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 13383 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 136486 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 296269 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 476404 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 1008785 14687873 ~ 14704622 (-)

Expression


Co-expression Network