LOC122343504 (si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776)


Basic Information

Item Value
gene id LOC122343504
gene name si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12279641 ~ 12371170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238010.1
CGCCAGGCCTGACGCCATCCAGAGCGGATCGGGGGACTACGCTCTGCACATCACCAAGAGACTCCTTCAGTTTTACCAGGATTACTTCAAAGTCAAATATTCCCTCCCTAAATTAGATCTGCTGGCGGTGCCGAAGCATCCGTACGCAGCCATGGAGAACTGGGGCctgagtgtgtttgtggagCAGAAGATCTTGTTGGATCGTGACGTCTCCTCCTTCTCCTATCAGATGGAGCTCACCATGGTGGTGGTGCACGAGATCTGTCATCAGTGGTTTGGGGATCTGGTCACACCGGTTTGGTGGGAAGACGTTTGGCTGAAGGAGGGATTCGCTCATTATTTTGAGTACATCGGGGCCGATTTCCTCTTTCCAAAGTGGAACATGGAGAAGCAGAGGTTCCTGACTGACGTTCTTCATGAAGTCATGTTACTGGACGGTTTGGCCAGTTCTCATCCCATCTCTCAGGAAGTGTTTGAAGCCACAGACATCGACAGAGTGTTTGACTGGATCGCGTATAAGAAGGGAGCCGCTCTGATCCGAATGCTGGCTAACGTCATGGGACAGCCGCTATTCCAGAGAGGCCTCAATGATTACTTGATGACGCACATGTACGGAAACGCGGCGAGAGATGACTTGTGGAACAAATTCTCCGAGGCCATGCAGCGGGAGGGAAAGGACATCAACATCACGCAGGTCATGGACCGCTGGACGCTCCAGATGGGTTACCCCGTCGTCACCATCAGCAAGAACGACAGTCTTGACAACAGTGTCACCATCTCACAAGAGCACTTCGTCTATGACACCGACGCCAAGATCCAGAATCCTGAGCTGTTCAACAAAAGCTTCCAGTGGCAAATACCGCTGACGCTCGCGGTGGGAAACTCCAGTCACATATCAACAGAGACCATCATCTGGGTCTCCAATAAAACAGAGAGGCACAGAGTGGGTCACGTGGACGGCGAGACGTGGTTGCTGGGCAACATCAATCAAACGGGCTACTTCAGAGTGAACTACGACCTTCACAACTGGAGACTTCTCATTCAACAGCTGATGACCAACCCAACGATCATCTCTGTGGGCAACAGGGCCGGTCTGATTGATGACGTCTTTAACCTAGCGAGaGCGGGGTATTTGCCCCAAAACGTCCCCCTGCAGATGATCTCATATTTATCTCAGGAGACTGAGTTTCTGCCGTGGCACGCTGCTAGTCGAGCTCTTTACCAGCTGGATAAACTCCTGGACCGCACAGAAGACCACAGCCTGTTTAGCGACTATGTTCTAAGACAGGTGGAACCGAAGTATCACAAGCTGGGCTGGCCTGCCTCTTCCCCTGACGGCTCCTTCATGCAGGCGGCTTATCAGGCCGAAGAGCTACAGAGAGAGGTAATGATGCTGGCCTGCAGTTTTGGAAACAAACACTGTCACCGACAGGCTGTTTCTCTCATTTCAGACTGGATTTCCAGCAACAAGAACAGGATTCCACCCAACGTGAGGGACATTGTGTACTGCACGGGTGTTTCTCTGATGGATGAGGACGTGTGGGAGTTCATCTGGATGAAGTTTCACTCATCGACAGCCATCTCTGAGAAGAAGGTTCTTTTGGAGGCCTTGACCTGCAGTGACAACATCTTCCTGCTCAACAGGCTCCTGAACCTGTCCCTCACCTCTGACCTGGTGCCCGATCAGGACGTGATCGATGTCATCATTCACGTGGGCCGCAATCCGCTCGGAAGACATTTAGCGTGGAGATATTTCCGCGAGAAGTGGGACATATTGAATTCCAGGTACGGAGAGGCCTTATTTATGAACTCAAAATTAATCAGCGGCGTGACGGAGTTTCTCAACACCGAGGCCGAGTTGAATGAGCTGAAAGAGTTCATCCTGACCAGCGGGGGAGAGTCTGCACCTGCGTTCGCCCGAGCCGTCGAGATCGTTCAAGCTAATGTAAAATGGCACGTCCTGTTCCATCAACAGCTTTACCGATGGCTGCGAAAAGCTCTCGACGGTTAGCCTCTATTAGCATCGAAACCCTATCAGACATCTCCAGGCCAGAGACGCGAGGACActcaattaaaagtaaaacatttacgAACTCAGAGAAACAGCAAAATTTTACTTCTGTTTCTCTGCTGTTTATGGAACAACCAGGCACTGACAGACCAAGACGAATTTCGCAGATCACAGCGCCGCCCTGCTGGCCAGCACAGCCACTGCACAATAGACAATAAAAGGTGGAGGAAAAGGACAAGTTGTagaaaatgaattgaaaaaaaattgcaccaCTTAAAATAGTAACTGATGGAATGAAATTTGCACTTTTGATTTAACATCATTTTGACGTCATTCGATCCTCTTTTTATcctaattttattaataacttgaatattttaaagcGTAATCTTGACAAGTAGCTTTTGGAAAAATTCCATCTTTCCCCAATTCAGTCCATCTTATGAGCTGTACGTTTATGTTTATTAACTCCAATAGAAAGAAAATGACTATGAAAGGACTTTGTCTACACTCACTGCATTCCCTCCCCGAAGACTGCTGCTGTTCTCGTACGGAACAGGGACGCTTTTCAAAGTTTCAAAGCTCCTCTTTGCTTTCCTTGCACAATCACaccattttattgatttatcttTTGTACAATATCAAATGAGGCCATATCTACCTTCATCAATCAGCTGAATAAAGCTAACTGTAGGTCAAGAGAGGATCCAGAACAGGTCGTTTTCATTTGTCTGTTATCATGGACAAACACATGCAAGCTTGTCTGATTATGGGTCGATGCTATATAAGGATTTCTTAAAGGTGCCTATGTCTGTTGTCTTGGGTCAGTAGTGGAATGCAGATGGAGATTCTTTAAAATTGACAAATGATAATTTAACTTGAAGTATGTGCATATACATGTATGCTggtttatgtgtatatatttatactaagTTAAATAACATATGGGTCAATGGTGTggcattttagttttgtttttgcttttttattgctttttttttattaattaaatggatagttcatccaaaaatgtaaattctgtcatcatttactcacccttatgtcgtCCCATGTGCCTTTTATCtttggaattaaaaaatatatatttttaaaaatattttcttatgtttttgtcttctaAAGAGGCTCGATTGCTTTATATAATGAACAGattaatttaagtttatattCCCATTTAACCATTGATCAACACAAATAGAGCTCAATAGTATGGTAGAAACTCAACACAGAAGCTCAACTGTGtgcttgatttttgttttttgatgaactatccaaagttatttaaaaagtactgtATATTGTTGCAGTTTATACAGACTACAACCTAAAAATGTTGAACTTCTGTGATGACGGTGTtcaaattctaaattaaaatgaatttttatatttttttgtgaatgttaaaataatacatgtcAGGGTGGTGTAACCATTGAaaagcttaatttattttaaaatacttgtcatgattatgtataattatttcttacaaattaaaaattgtatttttatttattcatacatttttgaagccatattgatatttgaaaaaaacgTTAAAATCCAAATCACTGTGGTATAACCAGCATATAGCATTTGAGTCCGATTTGACCTTTTTACTATGTGGCAAAGATTGTCAGATCTCAAAATCGTATAACCTGAAAATATTTGGAATTAATGATGTCCATATTCCattcttttacatattttgaaaacatttatttatataataataatttttcattaccTAGTGGTTGCACcacttgacatttttattaaatatatgtttacataCACCCTTATAATCTACCCATATTTTTTTCTACTCGTGCAGAtgcagtggtgtgaaaaagtgctgGCCCCCCTCctgattttttatttctttttttgtatgtcaCACTTTGATGTTTCACATCatcaaacaaatgtaattattaaaatcaaagataaacacaacatgcagttttttaaGTTAAGGTTTTTATTACGAAGGGgaaacaaaatccaaacccacatggccCTGTGTGAAAAGTACTTGCCCCTAAACCTAATAACTGGTCGGGCCCCCCTTAACAGCAACAACTGCGATCATGAGTCTGCTACAGCGCTGTGGAGGAACTTTAGCTCACTCACCTTTGTAGAATTGTTATAATTCAGCCACACTGGAAGGTTTTTGAGCATGAACCGCCTTTTTAAGGTCATGCCACAGCATCTAAATGGGATTCAGGTCAAGACTTTGACTAGGCCACTccaaagtcttcattttgtttttcttcagccattcAGAGGTGGACTTGCTGGTGTGTTTCGGAtcgttgtcctgctgcagaacccaAGTTCGTTTCAGCTTGAGGTCACAAACAGATGGCCGGACATTGTCCTTATTTTTGGTACACAGCAGAATTCCTGATTTCATTTAATCACAGCAAGTCTTCCAGGTCCTGAAGCACTGTTTTACTGTTgaaattctgttcttttctgaaatgctgttaCTTTTACGCCAAATGTAATGGGACACTTTTGTCTCGTCCACAGAGTATTGTCCCAAAAGTCTTGGGGATCAGCAAGATGTTTTCTGGCAAAACTGAGACAAgcctttatgttctttttgtttagCAGTGGTTTTCGTCTTATAGTGCCCAGTCTCTTTCTTATGTTGGAGtcttttgtgacattttgcATGAGCCTTAGCTGTGCTCTTGGGTTCATTTTGGTCAGCCCAGTCCATTCTTGGGAAGGCTCACCACTATTTTCGTCATTTGTGCAAACTCTTTTCACACAGGGCCATGTGGGTTCGGATTTAGTTTTCCCTTTATGataaaaacttcatttaaaaactgcatgttgtgttgACTTCTGTTAtctttgatttatatttaaatttgtctgatgatctgaaacatcaAAGTGCGAcaaacatgcagaaaaaaagaaaaaaaaaagaaactaaatcaGGAAGGGGGCCAAAACTTTTGTCACATCACTGTACATACTTATTACgaagcatttacattttgtagatatgttaatttgtgtctgtttatttgttttgtatacGTCGCaggcataaaatgtaaaaatgaaaatcttaaaaatatatatcagttATCAGTGCCTTTTCTACCTCACTATCCTTTTCCAATTAGAAAGACTGGCAGTGCCTTAAATAAACCTGTCGTAAACATT

Function

symbol description
trhde Predicted to enable metalloaminopeptidase activity; peptide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including peptide catabolic process; proteolysis; and regulation of blood pressure. Located in extracellular exosome.

NR:

description
PREDICTED: thyrotropin-releasing hormone-degrading ectoenzyme-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238010.1 True 5218 mRNA 0.41 17 12279641 12371170

Neighbor

gene id symbol gene type direction distance location
nup107 nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040 coding downstream 439589 11830757 ~ 11840052 (-)
cd36 cd36,LOC107590984,LOC107680017,LOC107694198 coding downstream 486721 11785346 ~ 11792920 (-)
kdm7aa LOC107694190,LOC107590789,LOC107710674,LOC107590966,LOC107680036 coding downstream 569139 11691122 ~ 11710502 (-)
orc5 orc5 coding downstream 662152 11607310 ~ 11617489 (-)
golgb1 golgb1,LOC107694188,LOC107755883,LOC107590726,LOC107710669,LOC107590960 coding downstream 677619 11582762 ~ 11602022 (-)
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding upstream 42616 12413786 ~ 12430886 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding upstream 121184 12492354 ~ 12536326 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding upstream 167887 12539057 ~ 12671471 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding upstream 704046 13075216 ~ 13090835 (-)
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding upstream 731145 13102315 ~ 13144908 (-)
G28130 NA non-coding downstream 10901 12265665 ~ 12268740 (-)
LOC122342788 NA non-coding downstream 41504 12236645 ~ 12238137 (-)
G28117 NA non-coding downstream 124390 12148132 ~ 12155251 (-)
G28086 NA non-coding downstream 260640 12018609 ~ 12019001 (-)
G28090 NA non-coding downstream 282338 11997013 ~ 11997303 (-)
LOC122342546 NA non-coding upstream 617537 12988707 ~ 13071520 (-)
G28349 NA non-coding upstream 856530 13227700 ~ 13227947 (-)
G28350 NA non-coding upstream 857924 13229094 ~ 13229319 (-)
G28353 NA non-coding upstream 871336 13242506 ~ 13245388 (-)
G28359 NA non-coding upstream 879481 13250651 ~ 13252034 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 263874 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 283002 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 595779 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 705875 11414720 ~ 11573766 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 1746098 10524531 ~ 10533543 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 94442 12465612 ~ 12489181 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 805791 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 945762 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 1040454 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 1321301 13692471 ~ 13698715 (-)

Expression


Co-expression Network