snd1 (snd1,LOC107738807,LOC107732977)


Basic Information

Item Value
gene id snd1
gene name snd1,LOC107738807,LOC107732977
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10016446 ~ 10157699 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238015.1
GCGGTGACCGAGGAAGTGCAACGCTTCGACGTGTACATCCTCGCGCTGTGCTTCCGGTTAAGCAAAGCGTGATCAGCCGTGCTCGGTCTCTCTTCCCTTCCTCGGCTCGCGGTATAGGCGTCTCGTAGGATTCTCCCGGTTccttcacctctctctctctctcttccctcccTAACGGAACACTCGTTCAGTCCGGCGGACATGGCATCTGCGGCACCGGCGCAAGTTCAGTCCAACCCAGCTTCAACTCCGCAGCTGCAGAGGGGAATAGTGAAGATGGTCCTGTCTGGTTGTGCTGTCATTGTTAGGGGTCAGCCGCGAGGAGGACCCCCTCCAGAACGACAGATCAACCTGAGTAACGTCCGAGCCGGAGCTCTCGCCCGCCGCGCAGTTCAGGGTCAACCGGACACCAAGGACACACCGGATGAGCCATGGGCTTTCCAGGCACGAGAGTTTTTGCGCAAGAAGGTAATCGGCAAAGAAGTCTGCTTCACCGTGGAGAACAAAACCCCTCAAGGCAGGGAATACGGCATCGTCTACCTGGGGAAAGACACCTCAGGAGAAAATATCGCAGAGTCCCTGGTGGTCGAGGGTCTTGCCACAGTTCGCAGAGAAGGCATCAGAGGAAACAATCCCGAGCAGGCCAGACTATGTGATTTGGAAGACCAAGCCAAGGCTGCTAAAAAGGGTCAGTGGTCTGAGGGTGGAGGCTCACACACCATTCGAGATCTGAAGTATACCATCGAGAACCCTCGCAACTTTGTGGACTCCCACCACCAAAAACCAGTCAACGCTATTATTGAACATGTACGTGATGGCTGCATGGTACGGGCGCTGCTTCTGCCTGACCACTATTTGGTGACAGTCATGCTGTCTGGAGTCAAGTGCCCTACGTTTAAACGGGAGGCAGATGGCAGTGAGACCCCCGAGCCCTTTGCAGCAGAGGCAAAGTTCTTCACAGAGTCGAGGCTTCTTCAGCGAGATGTGCAGATCATTTTGGAGTCCTGTCCCAACCAGGTCATTCTGGGTACCATCTTGCACCCGAACGGAAACATCACAGAGCTGCTGTTGAAGGAAGGCTTTGCCCGTTACGTGGACTGGTCCATGGCTGTGTACACCCAGGGTGCAGAGAAACTCAGAGCAGCAGAACGATCAGCGAAAGAGCGTAAAGTGAGAATCTGGAAGGACTATGTTGCTCCCACAGCCAATCTGGACCAGAAAGACAGACAGTTTGTAGCAAAGGTGATGCAGGTCGTGAATGCAGATGCCATCGTGGTGAAGCTAAACTCCGGGGAGTATAAGACCATCCACCTGTCCAGCATCAGGCCCCCGAGGCTGGAAGGCGAGGAGAAGAACAAGGACAAAGACAAGCGTTTCCGTCCACTCTATGACATTCCTTACATGTTTGAGGCACGGGAATTCTTGAGAAAGAAGCTCATTGGGAAGAAGGTTAATGTCACGGTTGATTACATCAGAGCTGCCACCAGTGCCATGGAAACGGGAGGCGTCCCGGCTTTTCCCGAACGCACCTGTGCTACAGTGACCATTGGAGGGATAAACACTGCTGAGGCTCTGGTCAGTAAAGGTCTCGCAACAGTGATCAGATACCGTCAAGACGACGATCAAAGATCTTCCCATTACGACGAGCTCTTGGCGGCAGAGGCAAGAGCGATCAAGAATGGCAAAGGACTTCACAGCAAGAAAGAAGTGCCCATTCACAGGGTGGCAGACATTTCAGGGGAGACACAGAAGGCGAAACAGTTCTTGCCATTCCTGCAGAGAGCGGGCCGCTCGGAGGCTGTGGTGGAGTACGTGTTCAGTGGCTCCAGACTGAAGCTCTACATGCCCAAAGAAACATGTCTCATCACCTTCCTGCTCGCTGgaATCGAGTGTCCCAGAGGGTCTCGAAACATGCCAGGTGGGATGCAGGTGGCAGAGCCGTACAGCGAGGAAGCCACAATCTTCACCAAAGAGCTGGTTCTTCAGAGAGAGGTGGAAGTGGAGGTGGAGAGCATGGATAAAGCAGGAAACTTTATTGGCTGGCTTCACATCGAGGGTGTGAATTTGTCCGTCGCTCTGGTGGAGAACGCCCTGTCGAAGGTCCACTTTACTGCAGAGAGAAGCTCCTACTACAAGACCCTGCTGTCTGCGGAGGAAACCGCCAGACAGAGGAAAGAGAAGcTCTGGGCCAATTATGAAGAAAAACCAAAAGAAGAGGTGGCTCAGGTCACAGAGGAGAAGGAACGTGTGGCGAAATACAGAGCCGTCTATGTCACCGAGATCACAGATGGACTGCACTTCTACGCGCAGGATGTGGAAACCGGTACAAAGTTGGAGAGCCTGATGGAGAGCATGCGAGGAGAGATTGCAGCCCAGCCTCCGGTGGAAGGATCTTTTTCTCCACGCAGAGGGGATTTCTGCATCGCAAAGTTTGCTGATGGAGAATGGTACAGAGCTCGCGTCGAGAAAGTTGAATCTCCAGCAAAGGTTCACGTGTTCTACATCGACTATGGAAACAGGGAGATATTATCCTCCACGCGTCTTGCAGCCCTTCCTCCAGCCTTCAGCACGCGTACGCTTCCTCCACAGGCTACAGAATACACATTTGCCTTCATTCAGGTCCCGCAGGATGAAGACGCACGGGCCGATGCCGTGGACAGTGTGGTCAGGGACATTCAAAACACACAGTGTCTGCTGAACGTGGAATACAGTGGAGCCGTCTGCCCACACGTCACACTGCAGTTTTCCGACTCGAAAGATGACGTGGGTCTGGGTCTGGTGAAAGAAGGCCTTGTCATGGTGGACGTACGGAAAGAAAAGTACCTGCAGAAAATGGTGACTGAATATCTGAACGGCCAGGAATCTGCCAAGAGTGCCAGGCTCAACATTTGGCGTTACGGAGATTTCCGTGACGATGACGCGGATGAGTTCGGGTATCGCCGCTAAGCTGTTGTTCCAAAGACCTTGAGGAAGACAAGATGCATTTTCtgagaacacaaaaaaacacaaaatcatgacaaaaaaaacacacacaacatcagtatgctcttattttttttctaatgttgaacatttgcatctgtttttttttttaatactctgTGCATATCCTCTCTTCTGCCCAAGGACTTTgtttcttgtcattttttttttttttttttttaagtgagtAGGCTACAGATAACTCTACCTGTAGCTGCTTCAAATAGGACCAATGTACTTACCTTAATCTTAAATTTTGACATGTTAGCCAATCATCTTGTTTATGTAAATTTTTAGCCAATCACCAGCTGTCAAACCCCATCCTAGCAAACCTGATCTGCCCAATCAGATTTCTATATTTTGGGGCAAGACTTTTAAAGAAATGAGGGGGATGCACAGAGCAACCGTGAACTCAACAGCTTGCTGAGAAAACGCCTCCTTAATCATGAGATTctatatttcagtatatatatggatattttGAAGTTAGATCAGAACTAACCAAGTGAACTTACTGAGCGTATTTTTGTCTCTCTGATGTGATCTGAGTGTTCAGTGACATTTCTGGGCATTTGTGTAGGAcgtgtgttttctctttttctgtggCAAAAGAAACGCTGCCAGCACCTTTACAAGCGTCTCTCGGCCTCCTCTGTGAGGTTTACTCAACGATCACCGTTTCTTCTTTTCCCGCTCTTGCCCGCCATACAGAAACAGTGTTTGAATTTCTTTCCTTCTGAGGTAGACCCTGTCATTgtatttaaatctgaaataaaaatgagcaaCGTGT

Function

symbol description
snd1 Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1).

NR:

description
PREDICTED: staphylococcal nuclease domain-containing protein 1

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004518 nuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15979 SND1; staphylococcal nuclease domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238015.1 True 3772 mRNA 0.50 24 10016446 10157699

Neighbor

gene id symbol gene type direction distance location
LOC122343372 dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 coding downstream 260520 9746940 ~ 9755926 (-)
lepb lepb coding downstream 334059 9680186 ~ 9682387 (-)
prrt4b LOC107695904,LOC107725552,LOC107590384,LOC107664879,LOC107732996 coding downstream 342336 9654456 ~ 9674110 (-)
rap1b rap1b,LOC107695907 coding downstream 383828 9587996 ~ 9632618 (-)
mcat mcat,LOC107695903,LOC107591294,LOC107732994,LOC107725637,LOC107553884 coding downstream 429464 9583638 ~ 9586982 (-)
hgfa hgfa,LOC107738831,LOC107732993,LOC107557293,LOC107591310,LOC107695871,LOC107699067 coding upstream 8817 10166516 ~ 10186077 (-)
cacna2d1a LOC107738810,LOC107732991,LOC107699066,LOC107590440 coding upstream 44294 10201993 ~ 10264346 (-)
cdhr5-rs LOC107699064,LOC107590451,LOC107733013,LOC107738811,LOC107557309 coding upstream 117814 10275513 ~ 10290873 (-)
drd4-rs drd4-rs,LOC107591318,LOC107738833,LOC107557292,LOC107732971,LOC107699035,LOC108432516 coding upstream 143643 10301342 ~ 10320173 (-)
atp6v1f atp6v1f,LOC107590479,LOC101079638,LOC107557307,LOC106511462 coding upstream 206406 10364105 ~ 10365584 (-)
G27627 NA non-coding downstream 692 10015182 ~ 10015754 (-)
G27581 NA non-coding downstream 271659 9697696 ~ 9744787 (-)
G27549 NA non-coding downstream 362069 9597457 ~ 9654377 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding downstream 448149 9565447 ~ 9568297 (-)
LOC122342618 NA non-coding downstream 464285 9547639 ~ 9552161 (-)
LOC122343524 NA non-coding upstream 165035 10322734 ~ 10349291 (-)
G27883 NA non-coding upstream 231748 10389447 ~ 10389805 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding upstream 288736 10446435 ~ 10562772 (-)
G27910 NA non-coding upstream 492199 10649898 ~ 10659974 (-)
G27940 NA non-coding upstream 556931 10714630 ~ 10720284 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 716267 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 1007142 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 1075043 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 1141848 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 1498863 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 198012 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 327223 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 366832 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 1257021 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 1495771 11653470 ~ 11683862 (-)

Expression


Co-expression Network