lrrc4.1 (lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105)


Basic Information

Item Value
gene id lrrc4.1
gene name lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10083600 ~ 10088337 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238017.1
CCAATGCACTGCTTGGAGTGTGATGCGTCAGCAGTACATTCACGTTTTCATTGAAGGACAAAAAGAAGAGCAGGCATGTAAGCCTGCGTCCCGTGTGCCTGCTACTGCACCACAgaacacagcaaaaaaacatcGTGAACAGAGGCGGGAAGGTGGACTAACCCGGGGCCAGagaacttaaaaataaaaaaggacagAAAGGAAGGAGCGAGGGAAGATGTTGCCATGGGGAGCCACTTTTCCCTAGCCTCAGCGCTCATCCACCGGCTTGAGCTGGACAGCTGTGCCGCTGACAAAGCTGAGAGCTCCAACTCTGCACTGAGCTCAGGGCACTGCAGCGCTATACGGATACTTCTCTGATCGACACAACGTCACAGAGAGGGGGGAGAAacgctctctcttttttctctcattccagggagagagagagagagcgcgctcGAAAGCAGGAGAGAGGGAAGGAGAACaaggcagagagagagcgatCTCTCTACAGTGAACGAGCCTTCTTACGGAGCTGCCTCTGCACTGGTACCCCCTTTTACACCTTCCCTGGACTCTCGTCGTCAACTTCTTATAGAAAAATTGCTGGATTATTGAGACACACGTAGAAAGAACCCTGCAACCCTTGCCGCGTGCAAGCGCGAGTGCACAGAGATGGAACGCGGAGCTACTTAAGAAAAGAAATGCGCTAATGACCGCAGTGTCACAGTCTTTTCAGCTGGACAAGGTGCTGTCAAATCGAGCGGACAAAACGTACTGAAAGGGAAGGAGACGGACAAAGTAAACATGTGTGAGCGGTCCTCTATGGAGACACGGGCATTTAGTAGCAGCATCAAGCGGAGGTATCCAAGGACAAGCATCTGTGGATAGTGTGAGAGCGAGCGCTTCTATAGGAGCCAAACAGGATTGGTACTTTTGCCTAAAGCTCTGAGGCCCTGCAGAGCTGCTACACGTCTCCTCGGATGCTCCTCTGTGGATTTATTAGGGGCCATTTTGGCATTCATCTCGTTTTctgacaaatgaaaaaaagaggagTTGCTTACCCTGGGAATATAGgaatttgagggaaaaaaaaaaatctattttgtgaTTGCAAAAATTGGACGTGTAAAACCTTTGAGGTAGGTGTTGAGCCTTTCCAAcccttttttatacataaaatatattccctcgtttgatttgattcattattCCTTGGCTTTTCACTTCTCCCTTTTTATTCAAGTACTTGTCACTAAACGTTTAGCCTCCAGTTCagtaaatggaaaaacaatCTAGAGTGTTGTTTAACCCAGGGTAGGGCTTCATTAGTCAGAGGTGAACCCCTCCTCCCACCCCCCACCCCGCTTACTACCCCCTCTCCCCAACCACCATCATCACCCCACAACCCCCCCCCCAGACGATGCTGAATTATGAATGTGCCACATCATGAGTCTCCTGGGGCGGGTAGCTGTGCGTCGAGCCAGGAAAGCCGCCCTGCTCTGTGTCCTGTTCCTCATGGTTCAAGTGTGCGTGGAGGTGGCGGCCGCGGCAGGGCCCCAGGGCTGCCCGACTGATTGCTCCTGCAACAACCAGCTCAGCAAGGTGGTGTGCACCAGGCGTGGGCTCACTCGCGTGCCACCAGGTATACCCAGCAACACCCGGCACCTAAACCTGATGGAGAACACCATTGAGGCTGTGCAGGCCGACTCGTTCCGCAACCTCCATCACCTGGAGGTACTGCAGCTGGGCCGCAATGCCATTAGACAGATTGAAGTAGGTGCCTTCAGTGGACTGACCAATCTCAATACACTGGAGCTGTTTGATAACCGCTTGACAGTGGTGCCAAGTGGGGCATTTGAATATCTGTCCAAGCTGCGAGAGTTGTGGCTGAGAAATAACCCCATTGAAAGCATCCCTTCGTATGCATTTAACCGAGTGCCATCCCTAATGAGATTGGATCTGGGTGAACTGAGGAAACTGGAGTACATCTCAGATGGGGCCTTTGAAGGTCTAGTCAACCTCAAGTACCTCAACCTGGGGATGTGCAACATTCGAGGGGAGATGCCGAACCTGACACCTCTGATTGGGCTGGAGGAGCTGGAAATCTCAGAGAACCTCTTTCCTGAGATTAAACCAGGTTCATTCAGAGGACTATCTTCACTCAAAAAATTATGGATCATGAACTCTCAAATAGGGCTAATTGAGCGAAATGCATTTGATGACCTGGCTTCTTTAGTGGAGCTGAATTTGGCTCACAACAATCTAAGCTCACTGCCCCATGCCCTCTTTACACCACTGAAATTTCTGGTGGAACTTCACCTCCACCACAACCCCTGGAACTGCGGCTGTGACTCACTCTGGCTAGCACGCTGGCTACGCGAGTACATACCCACCAACTCGACATGCTGTGGGCGCTGTCACTCCCCTGCACACATGAGAGGCCGTCAGTTGGTTGAGCTGGACCGGGGTGACACCGGGGCAATGCAATGCTCCGCCCCTTTTATCGCAGATGCCCCAAGAGACCTGAATATTTCTGCTGAACGTGTGGCAGAACTGCGATGTCGTACAGCAGCCATGTCTGCGGTGCGATGGCTCTTACCGAACGGGACGGTTCTAACGCACGCATCAAGCCACCCACGGATAACAGTGCTGAATGATGGGACTTTGAACTTTTCAAACGTGCTAGCAGGTGACACGGGCATGTATACCTGCATGGTGTCCAACGCGGCTGGAAATTCCAACGCTTCTGCCTATCTAAATGTAAGTGCAGCTGAGCTCAACACATCCAACCTCAGTTACTTCACCACAGTCACAGTGGAGGTGCTGAGCCCCAGATCTGAAATGCCCAAGCCCAAAACCACCACGACTACAGCAGGTGCCAGCACCACTACCACGGCCTCGCCATCAGTCTTTCAGCCAGTTTTCATCTCTACGCCGACAGTACTGCTTCAGAGCACTGATACTCCACCAAGTCGCCCATCTGTTGTACCTGGCTCAAAAGCAACGACGGGAAAGCCGCCCAACCCAGCCAGTACTAGTCTGGATGAGGTGATGAAGACAACAAAGATCATTATTGGTTGTTTTGTGGCAGTAACCTTGCTAGCAGCAATCATgctaattgtattttataaactACGGAAGCGGCATCAGCAGAGGAGCACAGTGGCTGCAGCCAGAACTGTGGAGATTATTCCGGTAGAGGAAGAACTGCCACCACCGGCATCTGCTGCCAATATAGCAGGGGAGGGGGCACTGACTCTACCAGAGATAAGGGATCATAACAGTATTTACAAACTGGAATACAACACCCACAAATCTGACTACGGCTACAAACCAAAACTAGAATACAGTACCCATAAATCCAAGGACGATTTTGGCATCCACAAACCTAAATCAGACTACAACACCTACAAACCTAAAACAGACTACATGTACCAACCTACTTTGGAATACAGCTCTCACAAACTGATGGACTACTCACACAAGTCTTTGCCGGATTACCACATACACAAAAAAGCTGAGCAGAGCCCCTACAAACATGGATATAGTACTCACAAACCTGACTACAAATCTCATACTCCTAAACCAGACTTTAGCCCATTCAAACCAGAGTACGGTGTTCCAAAATCCAAAACGGACTATAGTATGCCCAAGCTCAAATCCGATTACAGCCCCTTCAAGACAGACGGCAGCCTTTTCAAACCTGACTACAGTGCTTTTAAGGCAGAGTACAGCCCCCTCAAAGCAGAATATGTCAGTTGTGACTTCAGCCCTCACAAGTCCAAAATGGATTACAGTCCTCACAAGGTGGACTACAGCCCGCATAAGATCAACTACAGCACCATGAAGCCCAAATACAACACTTACAAGCCACCGGGTCATGGTGCCAAATGGACAGAAAGCAACAGCATTGGAAATTCTTTGCCTCGAACCTTGCCCAGTGCTATCACAGCTACTCCTGAGGCCCTTGTTATAAAAACTCACACCAAGGAGAAAGTACAAGAGACGCAGATATAGTCTGGCCCACAACAAATCAGAACCTCAGTCAAAACGACCCTCTCTCCCCCTGTAGGCCCACCCTCACCTGAgcataaaaacatgcaatagAATGcacaaaagaagagaaaaaaagacaggaactactttttttgtacagtgtgcaATTCTTAAAAGACTGATTCTTGTTGTACatgcttataaataaatatatatggaaaaaCAAACTACCATGGGCTGGTAATAGAAAATcagattatataaaaaaaaaataaattgaaactattttttaacttataactCCTATTTAAAAGATGAGTTGTTTTAAGATGCTgtactgaatttaaaatatgagGGTAGTCTTGTTTAAAAGGGCATTCTGTGTGATTTCTAAACAACGCTACAGAGaatgcagtgaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacatttatactgaaatccttcttttaaaaaacagaacagtAAAAGGTCAGTGTTGATCTTTGCAGGTTTATCTTGTAAAAGCACCATGAATTTGTACTGTGCCAAATGttacaaatgcaataaaaggatttttgaaagaaaagaaaaaa

Function

symbol description
lrrc4.1 Predicted to be involved in modulation of chemical synaptic transmission and synapse organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in glutamatergic synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane. Is expressed in basal plate midbrain region; nervous system; and neural plate. Orthologous to human LRRC4 (leucine rich repeat containing 4).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238017.1 True 4586 mRNA 0.47 2 10083600 10088337

Neighbor

gene id symbol gene type direction distance location
LOC122342860 ppfia2,LOC107694182,LOC107755902,LOC107680027,LOC107749078 coding upstream 340048 9723107 ~ 9743552 (+)
LOC122342846 ppfia4,LOC107675841 coding upstream 361134 9715610 ~ 9722466 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding upstream 429220 9641248 ~ 9654380 (+)
bik NA coding upstream 499088 9581569 ~ 9584512 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding upstream 506639 9556829 ~ 9576961 (+)
pax4 LOC107695909,LOC107576795 coding downstream 72810 10161147 ~ 10164486 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding downstream 281002 10369339 ~ 10374317 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding downstream 294282 10382619 ~ 10397829 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding downstream 359942 10448279 ~ 10463617 (+)
cacna1c cacna1c,LOC107590584,LOC107732972 coding downstream 439708 10528045 ~ 10642451 (+)
G27562 NA non-coding upstream 211597 9686499 ~ 9872003 (+)
LOC122342587 NA non-coding upstream 409923 9660487 ~ 9673677 (+)
LOC122342620 NA non-coding upstream 526882 9554960 ~ 9556718 (+)
G27498 NA non-coding upstream 546513 9536610 ~ 9537087 (+)
G27407 NA non-coding upstream 587947 9495434 ~ 9495653 (+)
G27643 NA non-coding downstream 174532 10262869 ~ 10264200 (+)
G27651 NA non-coding downstream 199141 10287478 ~ 10365571 (+)
G27731 NA non-coding downstream 560355 10648692 ~ 10659331 (+)
G27729 NA non-coding downstream 565367 10653704 ~ 10658141 (+)
G27754 NA non-coding downstream 1088087 11176424 ~ 11178043 (+)
G27490 NA other upstream 493282 9587319 ~ 9590318 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other upstream 505026 9577315 ~ 9578574 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 561567 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 687843 9381542 ~ 9395757 (+)
G27360 anks1b other upstream 856388 9163147 ~ 9227212 (+)
G27629 NA other downstream 69822 10158159 ~ 10257553 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other downstream 277375 10365712 ~ 10367925 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 391104 10479441 ~ 10507554 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 573894 10662231 ~ 10675110 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other downstream 597760 10686097 ~ 10702203 (+)

Expression


Co-expression Network