hgfa (hgfa,LOC107738831,LOC107732993,LOC107557293,LOC107591310,LOC107695871,LOC107699067)


Basic Information

Item Value
gene id hgfa
gene name hgfa,LOC107738831,LOC107732993,LOC107557293,LOC107591310,LOC107695871,LOC107699067
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10166516 ~ 10186077 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238023.1
gcgcgagggagaaagagagagagagagagcgctgcGATCAGTTTCTGTTCATCACTCAAAACCAGCAGCAACACCAGCTCGGACCTTATAAACTCTCCATCCCAAACCCTGGAATATCAAACCGAGAATCCTGAAATCGGACACAATGTGGATTTATCAGGCTCTTCTGTGCGTCTTACTGTCTGTGGATGTGGAGTGCAGGAAACAGACATTGCAAAGGTATCAGAAAAGTGAAAACAGCCGGCTGCTTTGCACAGACTGTCCGGAATCTCCTCGAATTAGAAATCTCTCGCTGGATGACTGCGCACGCAAATGCAGCAAGAGCAAGAAGTCCTgcagGGCATTCTGCTTTGACCACATAAACAGGAAATGTCACTTGCTTCCCTTCGACCGTTTCTCCGAAGGTGCAAAAAGAGAGCGCAAACCCAATTACGACCTTTACGAAAAGAAAGACTATGTGAAGGAGTGCATCATTGGGTCAGGTGTCAACTACAAGGGGAGAAGATCATTCACAAAGACTGGAATTACGTGTCAAGCCTGGAATATGTCCATCCCACATGAACACAATTTCAAGCCTGCCAGACACAAAAAGTTTGACCTCCGTCAGAACTTTTGCCGAAACCCAGACAATGATCCAAGTGGACCCTGGTGCTTCACCGAACTCACTGAGACTCGGCACCAGGAATGTGGGCTGCCCCAGTGTTCAGAAGTGGAGTGTATGAAGTGTAATGGGGAAACATACAGAGGGCCCATGGATCACACAGAGAGTGGGAAAGAGTGCCAGAGATGGGACTCACAGAAACCTCATAAACACACCTACCAGCCTCACAGGCATGTAGGTAAAGGCCTAGATGACAACTACTGCCGCAATCCCAATAATGACGTGCGTCCGTGGTGTTACACAATGGACAAAAATACACCATGGGAGTACTGTAACATAAGTGTGTGTGaCTCAGGTAATGATGTGGAAGTGGAGGCGACCACCTCTTGTTTTCAGGGTCAGGGAGAGGGTTACAGGGGTACAGTCAGCGTGACCCCTGCGGGTGTGACCTGTCAACGCTGGGACGCCCTCTTTCCTCACAACCATTCATACACACCTCACAACTATAAATGCAAGGATCTCAGGGAGAACTTCTGCAGAAACCCCGATGGCTCTGAAATTCCCTGGTGTTTCACCACAGACCCAAAAGTACGCAAAGCTTTCTGTAGCAACATCCCCAGATGTGATTCAGAGAGCTCTGACAGCACAGAATGTTATGAAGACAACGGTGAGAGTTACCGCGGTAATTTGTCCAAAACAAGATCTGGTATCCCTTGTGGGCTGTGGTCCGACCACACATTCAGgagagaCTTGCAGTCGGCGAAGGCCAGCTCGGGCTTAGAGTTGAACTTGTGCAGGAATCCAGACCGAGATAAGCACGGGCCGTGGTGCTATACGTCTAACTCCTCCATTCCTTGGGACTACTGCGGACTGGAGCGATGTAAATCAGCGTCAACAGATGACCATCAAAAGAGTGGAGGACCAAAACCATCTTGTTTTATACACAAAACCACGCGGATTGTTGGAGGGATGCAGGTGCAGCGGGCAGAGGATGGAAGCTGGGTGGTCAGCATTCAGAAAGGGAACAAACACTGGTGCGGTGGCTCTCTCATCAGAGAGGAATGGGTTCTGACTGATCAGCAGTGCTTCTCCACCTGCGTTCCTGACCTCTCGGAGTACACCGTGCAGGTTGGGCTTCTTCATCTCAACACGTCCACCGGCACACAGGGTCTCCGGATCGCACATGTGGTCTGCGGGCCCGAGGGATCCAACTTGGCCCTGCTCAAACTCACAACGCCTGCCCCTCTCTCTGAGCATGTGCGAACTGTGCTGCTTCCTGTCGCAGGATGTGCTGTTGCAGAGGGCACCTACTGCCTCATGTACGGCTGGGGAGACACTAAAGGCACAGGTCATGAGGGAAGTCTGAAGATGGTGGGACTTCCAATCGTCAGCAACAAGAGGTGTTCCCAAAGCCACAAGGGTATTCTGCCAATAACCGAGACCAAAATCTGCGCTGGAGGCAAGAGAGACCAAGGTGTTTGTGAGAAAGACTACGGTGGCCCATTGGTGTGCCAGGAAGGAGAGAGCAAGGTCATAGTGGGTGTGAGCATCAACGGCCGAGGATGTGCCGTCGCCAGGCGCCCTGCCGTCTTTGTCAACGTGGCCTTCTACTCGGAATGGATCCGCAAAGTCTTCAAATACTATTCAGACTTGGAAATCAGTTactagattattatattttccacAGATTTGGCAAATAGAACTAATGGTGCGTTGCATTTCTTTAACATCTACAACACGAAGACCAAGGTTGCTGTATGGTTCGAATACAAACAACTTGGAGGCCAGAATTTAGCTTAAATGAAAACCACTGGAATGGAAAGGTTGCAAGGCAAGAATATCTGATGTTTTCgcaaacaaaatgtgaaaatcagacatcagacattatttttaaaccaacAAATGGTGGAAATGACAACTTCTGAACTCTCCAGAAGTTTGTTGTGGCTGGTGATTTAGCCCTTATAAATGAAGGACAGATGGATAAATGACGAAAGAAAAGCAATTAGAAGAAACTGTGGTGTCAATccatataaacatatttgtcTCAGACGAGAGCAGATGTTCTAAATGTCATTCCCTGGAGATACTTGAAGATGGCAAAAACCCAACGTTTTCAGACAGGACGGAGCTTTTCTTTTCACTGGGGTGCATTTTTCAGACATTATCACTTGCTCACAGATGAATTTTCTTCATTGTATGTCATTTTGGTGCATCCCAAACACCATTTTCAACATCAACCGCTTGACGAATCGGCAGTCTTCACTGAACGGGATGTTATCACACACTTCCAGAGGGGTTCAGTGACACTCTCGTGTTTCGCACCTTGCCTTACTCCAGTTTGGAGCGTTCTGTGGCCCCTTTGGGGCTGTTTCGTGTACTGCACTCCAAAGAGTGTGCTAATGTCACTCTGTACGTCCGTGGGTCTTATAGATCTGAAATTACAAACATCTGAAGGTCTTTCCTTTCACATGGTGTAATATATCTGTCGAAATTTTATACGCAGTTCGcgaagtatttatttatatcttttataGATCGACCGAAGTCGTGGCGTTTCATCCTCCAGaagtgtttattgtgtttaatcTGGCGTGTGGATTTGAAACATaacatttgtaaacaaaacaaatggaCGATATGTCTTTAAAGGAAAATATTGGGTCGTAACAGAGTGTTTTGACTCAAAGACGGCTCCCCGAAGGTTTATAAGCCGCACATGTGGAGGGTCCAAGTTTAGCCAAGAGTGCAAAGACACTTAGTCAAACTGTAGTACTAAATAGAGTAATGCAGTCGACAACAGGCAGGGTAACTGTTTTAACTAATGTTTATTGCGTTTTTAATacgaaaatgtattttattgtaaatatcatGTTTGCTGTGTATATAAGGTGCCtggtttttgacattttatcagttttcaCACTTGTTTCGTATTGTTAACACCGGTTTTGTTCGCTGCTGCCGTCAATGGTCTTAATATTGAATATCTAGgctgctgttgttttgatcactatttttatagaatgttttgtactttcagttttttttttttaatgtaag
>XM_043238024.1
agcgcgcgcgagggagaaagagagagagagagagcgctgcGATCAGTTTCTGTTCATCACTCAAAACCAGCAGCAACACCAGCTCGGACCTTATAAACTCTCCATCCCAAACCCTGGAATATCAAACCGAGAATCCTGAAATCGGACACAATGTGGATTTATCAGGCTCTTCTGTGCGTCTTACTGTCTGTGGATGTGGAGTGCAGGAAACAGACATTGCAAAGGTATCAGAAAAGTGAAAACAGCCGGCTGCTTTGCACAGACTGTCCGGAATCTCCTCGAATTAGAAATCTCTCGCTGGATGACTGCGCACGCAAATGCAGCAAGAGCAAGAAGTCCTgcagGGCATTCTGCTTTGACCACATAAACAGGAAATGTCACTTGCTTCCCTTCGACCGTTTCTCCGAAGGTGCAAAAAGAGAGCGCAAACCCAATTACGACCTTTACGAAAAGAAAGACTATGTGAAGGAGTGCATCATTGGGTCAGGTGTCAACTACAAGGGGAGAAGATCATTCACAAAGACTGGAATTACGTGTCAAGCCTGGAATATGTCCATCCCACATGAACACAATTTCAAGCCTGCCAGACACAAAAAGTTTGACCTCCGTCAGAACTTTTGCCGAAACCCAGACAATGATCCAAGTGGACCCTGGTGCTTCACCGAACTCACTGAGACTCGGCACCAGGAATGTGGGCTGCCCCAGTGTTCAGAAGTGGAGTGTATGAAGTGTAATGGGGAAACATACAGAGGGCCCATGGATCACACAGAGAGTGGGAAAGAGTGCCAGAGATGGGACTCACAGAAACCTCATAAACACACCTACCAGCCTCACAGGCATGTAGGTAAAGGCCTAGATGACAACTACTGCCGCAATCCCAATAATGACGTGCGTCCGTGGTGTTACACAATGGACAAAAATACACCATGGGAGTACTGTAACATAAGTGTGTGTGaCTCAGGTAATGATGTGGAAGTGGAGGCGACCACCTCTTGTTTTCAGGGTCAGGGAGAGGGTTACAGGGGTACAGTCAGCGTGACCCCTGCGGGTGTGACCTGTCAACGCTGGGACGCCCTCTTTCCTCACAACCATTCATACACACCTCACAACTATAAATGCAAGGATCTCAGGGAGAACTTCTGCAGAAACCCCGATGGCTCTGAAATTCCCTGGTGTTTCACCACAGACCCAAAAGTACGCAAAGCTTTCTGTAGCAACATCCCCAGATGTGATTCAGAGAGCTCTGACAGCACAGAATGTTATGAAGACAACGGTGAGAGTTACCGCGGTAATTTGTCCAAAACAAGATCTGGTATCCCTTGTGGGCTGTGGTCCGACCACACATTCAGgagagaCTTGCAGTCGGCGAAGGCCAGCTCGGGCTTAGAGTTGAACTTGTGCAGGAATCCAGACCGAGATAAGCACGGGCCGTGGTGCTATACGTCTAACTCCTCCATTCCTTGGGACTACTGCGGACTGGAGCGATGTAAATCAGCGTCAACAGATGACCATCAAAAGAGTGGAGGACCAAAACCATCTTGTTTTATACACAAAACCACGCGGATTGTTGGAGGGATGCAGGTGCAGCGGGCAGAGGATGGAAGCTGGGTGGTCAGCATTCAGAAAGGGAACAAACACTGGTGCGGTGGCTCTCTCATCAGAGAGGAATGGGTTCTGACTGATCAGCAGTGCTTCTCCACCTGCGTTCCTGACCTCTCGGAGTACACCGTGCAGGTTGGGCTTCTTCATCTCAACACGTCCACCGGCACACAGGGTCTCCGGATCGCACATGTGGTCTGCGGGCCCGAGGGATCCAACTTGGCCCTGCTCAAACTCACAACGATGTGCTGTTGCAGAGGGCACCTACTGCCTCATGTACGGCTGGGGAGACACTAAAGGCACAGGTCATGAGGGAAGTCTGAAGATGGTGGGACTTCCAATCGTCAGCAACAAGAGGTGTTCCCAAAGCCACAAGGGTATTCTGCCAATAACCGAGACCAAAATCTGCGCTGGAGGCAAGAGAGACCAAGGTGTT

Function

symbol description
hgfa Predicted to enable serine-type endopeptidase activity. Acts upstream of or within cerebellar granule cell differentiation and neuron migration. Is expressed in several structures, including DEL; adaxial cell; axis; endodermal cell; and forebrain neural rod. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autosomal recessive nonsyndromic deafness 39; eye disease (multiple); neuropathy (multiple); and scleroderma (multiple). Orthologous to human HGF (hepatocyte growth factor).

NR:

description
PREDICTED: hepatocyte growth factor-like

GO:

id name namespace
GO:0001764 neuron migration biological_process
GO:0006508 proteolysis biological_process
GO:0021707 cerebellar granule cell differentiation biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K05460 HGF; hepatocyte growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238023.1 True 3664 mRNA 0.46 18 10166516 10186072
XM_043238024.1 False 2035 mRNA 0.51 17 10168183 10186077

Neighbor

gene id symbol gene type direction distance location
snd1 snd1,LOC107738807,LOC107732977 coding downstream 8817 10016446 ~ 10157699 (-)
LOC122343372 dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 coding downstream 410590 9746940 ~ 9755926 (-)
lepb lepb coding downstream 484129 9680186 ~ 9682387 (-)
prrt4b LOC107695904,LOC107725552,LOC107590384,LOC107664879,LOC107732996 coding downstream 492406 9654456 ~ 9674110 (-)
rap1b rap1b,LOC107695907 coding downstream 533898 9587996 ~ 9632618 (-)
cacna2d1a LOC107738810,LOC107732991,LOC107699066,LOC107590440 coding upstream 15916 10201993 ~ 10264346 (-)
cdhr5-rs LOC107699064,LOC107590451,LOC107733013,LOC107738811,LOC107557309 coding upstream 89436 10275513 ~ 10290873 (-)
drd4-rs drd4-rs,LOC107591318,LOC107738833,LOC107557292,LOC107732971,LOC107699035,LOC108432516 coding upstream 115265 10301342 ~ 10320173 (-)
atp6v1f atp6v1f,LOC107590479,LOC101079638,LOC107557307,LOC106511462 coding upstream 178028 10364105 ~ 10365584 (-)
dennd6b dennd6b,LOC107738816,LOC107590515,LOC107694164,LOC107732989,LOC107557304 coding upstream 187551 10373628 ~ 10381715 (-)
G27628 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC107738809,LOC108432552 non-coding downstream 28460 10083419 ~ 10138056 (-)
G27627 NA non-coding downstream 150762 10015182 ~ 10015754 (-)
G27581 NA non-coding downstream 421729 9697696 ~ 9744787 (-)
G27549 NA non-coding downstream 512139 9597457 ~ 9654377 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding downstream 598219 9565447 ~ 9568297 (-)
LOC122343524 NA non-coding upstream 136657 10322734 ~ 10349291 (-)
G27883 NA non-coding upstream 203370 10389447 ~ 10389805 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding upstream 260358 10446435 ~ 10562772 (-)
G27910 NA non-coding upstream 463821 10649898 ~ 10659974 (-)
G27940 NA non-coding upstream 528553 10714630 ~ 10720284 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 866337 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 1157212 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 1225113 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 1291918 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 1648933 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 169634 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 298845 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 338454 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 1228643 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 1467393 11653470 ~ 11683862 (-)

Expression


Co-expression Network