pax4 (LOC107695909,LOC107576795)


Basic Information

Item Value
gene id pax4
gene name LOC107695909,LOC107576795
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10161147 ~ 10164486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238028.1
CGCAGGGACGCATCTCCTTCAAAAAGAACAAGACCGCATCGGCTCAAGACCACCTGGTGCCGGTTGAGATGCGCCGCGCAAATTCCGATCCGGGAAACGAAGGAGAAGGGAGTCTGAATCAGCTGGGCGGTGTGTTTCTGAACGGCCGTCCCCTGCCCGTCTATAAACGGAGACTGATGATCGAGCTCGCGAACGAGGGGCTGAGACCGTGTCAGATCTCCAGAATACTGAAGGTCTCCAACGGCTGTGTCAGTAAGATTTTGGGCAGGTTTCAGCGCACAGGGTCCGTTGGTCCTAAGGCAACGGGAGGCAGCAGACCCAGGCTCCTGACCCCGGACGTTATCTCCATCATTGCCCAGCACAAGCGGCGGAACCCCGCGCTCTTCGCCTGGGAGATCCGGCAAAAACTGGCCACGGATCGAGTCTGCAGAGGAGATAAAGTCCCCAGTGTGTCTTCCATAAACCGTATTCTCAAGAAGATTGATGTAGATGCGGACGTGATGAACAGTGCGCACCCGAGCGTAAAACACAGTTACTCAGAGGAACGGCTGGACGAGCAGAGGAGTTTACACGCAGCAGCTCAGACAAATCAGCCGCTAATGAACAGAGGAACCTCTCATCGCGGCAGAACGGCGTTCACCTCAGATCAGAGCGAGAGGTTAGAGAAAGAGTTTATCCGTGGGCTTTATCCTGACCTTCTGACCAGAGAAAAGCTGTCCGAGGAGACAAACCTTCCAGAGAACACTATAAAGGTTTGGTTCTCCAATCGCAGAGCGAGAATGAGGAGGGAGCAAAAGGAAGAACCGAGTGACTGTGGATCACTGGGTGTAACTAGGCCAAGGTTTCTGGGAAGCAGGAATGCTATGATTTCGTTGACAGCAACATCTGGCAGCTCATTGGACGGCTGCTTGGCTCACCACTACACGCAATCTACTTTTCCAATGGCCCatcacacagacagaaacacgtTCCCATTGGCCCATTTGGACTCGAGCGCGGCGTCAACGTGTCTGTCGGATCGCACAGAGAGAAATGAGGAATCAGCTTACCGGTTGGTTCCTTTCGTCACAGATGAAAGGATGTTAATGACCAGCCGTTCACAGTGGGCTTCTCATCAGTCTCTGATTGGACAGGATGTTGCAATGTTTTGAATTCCAAAATAGAACGTTCATGGACATTGATGTTGTGGACAGTAGAGGGCAGCAAAGGAAAGGAATAGCGCCCTTCTtgtggaatgtgtgtgtgtgtgtgtgtgaaaaaaataaataatatgaattaaaataattacatatattatatatacctATATTGCATTTCCACAGGGTTTGCACAGGTCTTAtgacaattaataataatttaatgatttattaattaaaatgtaaaaatgtaatggtttttgTAGTGGACACAACATTTAATGCAACGACTTTACAAATTAAAGACTTTAGGCTCAGGTTTAagactttttattgtattgactTGTATTGACTTGAATTTTTAAGACCTgcctatttataatttatataattttgcagTGCACCTTTCAAtcaatgtatgtgtatgtatatatattactgctgtcaaatgatta

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-4-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K08032 PAX4; paired box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238028.1 True 1591 mRNA 0.46 9 10161147 10164486

Neighbor

gene id symbol gene type direction distance location
lrrc4.1 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105 coding upstream 72810 10083600 ~ 10088337 (+)
LOC122342860 ppfia2,LOC107694182,LOC107755902,LOC107680027,LOC107749078 coding upstream 417595 9723107 ~ 9743552 (+)
LOC122342846 ppfia4,LOC107675841 coding upstream 438681 9715610 ~ 9722466 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding upstream 506767 9641248 ~ 9654380 (+)
bik NA coding upstream 576635 9581569 ~ 9584512 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding downstream 204853 10369339 ~ 10374317 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding downstream 218133 10382619 ~ 10397829 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding downstream 283793 10448279 ~ 10463617 (+)
cacna1c cacna1c,LOC107590584,LOC107732972 coding downstream 363559 10528045 ~ 10642451 (+)
LOC122342684 NA coding downstream 550274 10714760 ~ 10716607 (+)
G27562 NA non-coding upstream 289144 9686499 ~ 9872003 (+)
LOC122342587 NA non-coding upstream 487470 9660487 ~ 9673677 (+)
LOC122342620 NA non-coding upstream 604429 9554960 ~ 9556718 (+)
G27498 NA non-coding upstream 624060 9536610 ~ 9537087 (+)
G27407 NA non-coding upstream 665494 9495434 ~ 9495653 (+)
G27643 NA non-coding downstream 98383 10262869 ~ 10264200 (+)
G27651 NA non-coding downstream 122992 10287478 ~ 10365571 (+)
G27731 NA non-coding downstream 484206 10648692 ~ 10659331 (+)
G27729 NA non-coding downstream 489218 10653704 ~ 10658141 (+)
G27754 NA non-coding downstream 1011938 11176424 ~ 11178043 (+)
G27490 NA other upstream 570829 9587319 ~ 9590318 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other upstream 582573 9577315 ~ 9578574 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 639114 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 765390 9381542 ~ 9395757 (+)
G27360 anks1b other upstream 933935 9163147 ~ 9227212 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other downstream 201226 10365712 ~ 10367925 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 314955 10479441 ~ 10507554 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 497745 10662231 ~ 10675110 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other downstream 521611 10686097 ~ 10702203 (+)
LOC122342850 LOC107740709 other downstream 542646 10707132 ~ 10708947 (+)

Expression


Co-expression Network