usp18 (LOC107725967)


Basic Information

Item Value
gene id usp18
gene name LOC107725967
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1990505 ~ 1993588 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238036.1
aagtaaaaacagCTGTTTCTGTTGATTTCTTTTCGAAACTGTTATGTTTCGAGTAAAACGGGAGCTTAAGTGTCTTGAAGAGGATCGATATTTCGTCAGCTTAGTTTGATTTTCTATAACCAATACGCAGATTAATGGTAGGTTTCCATAGATGCAACACTGAGAAACGTTTGCCGTCGTGTATGTCTCTGGATGGGGAGGTATTGCAGTAAAATGGCTTATCGATTTTACAGCGGCTCTGGATCACTGGGTTATGAAGTAAGGGGCCTTTTAAACTACAATCTGTCCTGCTGTACCAATGCTTTGCTTCAGTCGTTTTCTGCGACCACTGAACTCCTGGACATACTGAACAAATGGCATCCATCAGATGAGACTGATGAGAGGAACGTCCTGCTGCAGTTGAAGAACGCCCTGGAAGCCATGAGGGACAAATCACATCCTGCTCCACACAAAGACTTCCTCAAATGCCTCTACTATCAAGCCGTCCGACCAAGCACTCAACAAGATGCAGATGAAATATTCCACATCATCCTCAATCTCAGTCAGAAGCAGATGCCTGATGCTGCTGTGGCTCAGGAAATTCGCAGTCTCTTTGAGATTCAGGTAGAAAACCAGGTGGTGTGTTCAGAGTGCACATACATTCACAGAGCACCCAGCTCTCTTTTCAGCCTTCCTTTGGCAATCTTCGAAAGAGACACTCTGGAAAGCTGCATCAAATCTTTTTTCATGCTGCAAGAGCTGCCCGACAGCGAGAAGGCTTACTGTGACCGGTGTGCTGAAAAGCGGCCGTCAACTCAtgAAGTGAGACTTGTCTCTTTGCCTCCGATTCTGTGTGTACAGTTGAAAAGATTCAGAAACGATAAAGGTTTCATCAGGAAACTCTCCAGCAAAGTCACCTTTCCTGAAATGTTCAGTACTGAGATTTTTGCTGCAGGACAAtcagaaaatGCTGATTACGTCAAGACTAATGAGTATTACAGTCTCTATGCCGTAATAGTGCATGAAGGACACATGTTTGGACACTACACTGCTTTCATCAGATCGAATCAGGAGGAGATGTGGTATTATGCTGACGACTGCCGCGTGCGGCCATCCACATGGGCAGATGTGCAGGACACATATGGAGGGTCCCATCAGTATGGAAGCACAGCCTACTTGCTTCTGTACAGGAAGAAGAGCAGGAATTTGTCTGCGTAATTCTTGGGAACGCGGCAGCACTTGATCGACACTATATGACATAATACAGAGAATATTCCAAGAACAGGACtaaaatgtagttatattttTGGGATAAGTATAtgaagaaatcatatttttaagaaGGTTAATCAGTAAATTTTGGGGTTTATGTAGGACAGTATTTTGGATaggattttgttattttgtcagAATGTTTTCTGTAATCTAtggatattattaaataaaaaatactagttttgaaataatcagaatcaactttattgccaggtatgtttacacatacgaggaatttgttttagtaacagaagctctacagtgcaacaggaTAACAAGA
>XM_043238037.1
aagtaaaaacagCTGTTTCTGTTGATTTCTTTTCGAAACTGTTATGTTTCGAGTAAAACGGGAGCTTAAGTGTCTTGAAGAGGATCGATATTTCGTCAGCTTAGTTTGATTTTCTATAACCAATACGCAGATTAATGGTAGGTTTCCATAGATGCAACACTGAGAAACGTTTGCCGTCGTGTATGTCTCTGGATGGGGAGGTATTGCAGTAAAATGGCTTATCGATTTTACAGCGGCTCTGGATCACTGGGTTATGTAAGGGGCCTTTTAAACTACAATCTGTCCTGCTGTACCAATGCTTTGCTTCAGTCGTTTTCTGCGACCACTGAACTCCTGGACATACTGAACAAATGGCATCCATCAGATGAGACTGATGAGAGGAACGTCCTGCTGCAGTTGAAGAACGCCCTGGAAGCCATGAGGGACAAATCACATCCTGCTCCACACAAAGACTTCCTCAAATGCCTCTACTATCAAGCCGTCCGACCAAGCACTCAACAAGATGCAGATGAAATATTCCACATCATCCTCAATCTCAGTCAGAAGCAGATGCCTGATGCTGCTGTGGCTCAGGAAATTCGCAGTCTCTTTGAGATTCAGGTAGAAAACCAGGTGGTGTGTTCAGAGTGCACATACATTCACAGAGCACCCAGCTCTCTTTTCAGCCTTCCTTTGGCAATCTTCGAAAGAGACACTCTGGAAAGCTGCATCAAATCTTTTTTCATGCTGCAAGAGCTGCCCGACAGCGAGAAGGCTTACTGTGACCGGTGTGCTGAAAAGCGGCCGTCAACTCAtgAAGTGAGACTTGTCTCTTTGCCTCCGATTCTGTGTGTACAGTTGAAAAGATTCAGAAACGATAAAGGTTTCATCAGGAAACTCTCCAGCAAAGTCACCTTTCCTGAAATGTTCAGTACTGAGATTTTTGCTGCAGGACAAtcagaaaatGCTGATTACGTCAAGACTAATGAGTATTACAGTCTCTATGCCGTAATAGTGCATGAAGGACACATGTTTGGACACTACACTGCTTTCATCAGATCGAATCAGGAGGAGATGTGGTATTATGCTGACGACTGCCGCGTGCGGCCATCCACATGGGCAGATGTGCAGGACACATATGGAGGGTCCCATCAGTATGGAAGCACAGCCTACTTGCTTCTGTACAGGAAGAAGAGCAGGAATTTGTCTGCGTAATTCTTGGGAACGCGGCAGCACTTGATCGACACTATATGACATAATACAGAGAATATTCCAAGAACAGGACtaaaatgtagttatattttTGGGATAAGTATAtgaagaaatcatatttttaagaaGGTTAATCAGTAAATTTTGGGGTTTATGTAGGACAGTATTTTGGATaggattttgttattttgtcagAATGTTTTCTGTAATCTAtggatattattaaataaaaaatactagttttgaaataatcagaatcaactttattgccaggtatgtttacacatacgaggaatttgttttagtaacagaagctctacagtgcaacaggaTAACAAGA
>XM_043238038.1
tgaaagtaaaaacagCTGTTTCTGTTGATTTCTTTTCGAAACTGTTATGTTTCGAGTAAAACGGGAGCTTAAGTGTCTTGAAGAGGATCGATATTTCGTCAGCTTAGTTTGATTTTCTATAACCAATACGCAGATTAATGGTAGGTTTCCATAGATGCAACACTGAGAAACGTTTGCCGTCGTGTATGTCTCTGGATGGGGAGGTATTGCAGTAAAATGGCTTATCGATTTTACAGCGGCTCTGGATCACTGGGTTATGAAGTAAGGGGCCTTTTAAACTACAATCTGTCCTGCTGTACCAATGCTTTGCTTCAGTCGTTTTCTGCGACCACTGAACTCCTGGACATACTGAACAAATGGCATCCATCAGATGAGACTGATGAGAGGAACGTCCTGCTGCAGTTGAAGAACGCCCTGGAAGCCATGAGGGACAAATCACATCCTGCTCCACACAAAGACTTCCTCAAATGCCTCTACTATCAAGCCGTCCGACCAAGCACTCAACAAGATGCAGATGAAATATTCCACATCATCCTCAATCTCAGTCAGAAGCAGATGCCTGATGCTGCTGTGGCTCAGGAAATTCGCAGTCTCTTTGAGATTCAGGTAGAAAACCAGGTGGTGTGTTCAGAGTGCACATACATTCACAGAGCACCCAGCTCTCTTTTCAGCCTTCCTTTGGCAATCTTCGAAAGAGACACTCTGGAAAGCTGCATCAAATCTTTTTTCATGCTGCAAGAGCTGCCCGACAGCGAGAAGGCTTACTGTGACCGGTGTGCTGAAAAGCGGCCGTCAACTCAtgAAGCTGATTACGTCAAGACTAATGAGTATTACAGTCTCTATGCCGTAATAGTGCATGAAGGACACATGTTTGGACACTACACTGCTTTCATCAGATCGAATCAGGAGGAGATGTGGTATTATGCTGACGACTGCCGCGTGCGGCCATCCACATGGGCAGATGTGCAGGACACATATGGAGGGTCCCATCAGTATGGAAGCACAGCCTACTTGCTTCTGTACAGGAAGAAGAGCAGGAATTTGTCTGCGTAATTCTTGGGAACGCGGCAGCACTTGATCGACACTATATGACATAATACAGAGAATATTCCAAGAACAGGACtaaaatgtagttatattttTGGGATAAGTATAtgaagaaatcatatttttaagaaGGTTAATCAGTAAATTTTGGGGTTTATGTAGGACAGTATTTTGGATaggattttgttattttgtcagAATGTTTTCTGTAATCTAtggatattattaaataaaaaatactagttttgaaataatcagaatcaactttattgccaggtatgtttacacatacgaggaatttgttttagtaacagaagctctacagtgcaacaggaTAACAAGA

Function

NR:

description
PREDICTED: ubl carboxyl-terminal hydrolase 18-like

GO: NA

KEGG:

id description
K11846 USP18_41; ubiquitin carboxyl-terminal hydrolase 18/41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238036.1 True 1534 mRNA 0.42 10 1990508 1993588
XM_043238037.1 False 1531 mRNA 0.42 10 1990508 1993588
XM_043238038.1 False 1390 mRNA 0.42 10 1990505 1993588

Neighbor

gene id symbol gene type direction distance location
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 568 1987476 ~ 1989937 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding upstream 3331 1985568 ~ 1987174 (+)
si:ch73-352p4.8 si:ch73-352p4.8,LOC107726064,LOC107710127,LOC107656372,LOC107583968,LOC107658734 coding upstream 11215 1973274 ~ 1979290 (+)
ngs LOC107583969,LOC107725974,LOC107658888,LOC107579501,LOC107656267,LOC107710103 coding upstream 24970 1960862 ~ 1965535 (+)
pou3f2a pou3f2a,LOC107726028,LOC107583975,LOC107656268,LOC107579586,LOC107710088,LOC107658894 coding upstream 44908 1940742 ~ 1945597 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding downstream 7501 2001089 ~ 2022310 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding downstream 184944 2178532 ~ 2189748 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding downstream 395391 2388979 ~ 2394441 (+)
foxp2 foxp2 coding downstream 512358 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 628951 2622539 ~ 2641837 (+)
G25193 NA non-coding upstream 81578 1907200 ~ 1908927 (+)
G25192 NA non-coding upstream 84399 1905830 ~ 1906106 (+)
LOC122342405 NA non-coding upstream 88619 1899896 ~ 1901886 (+)
G25086 NA non-coding upstream 159537 1830678 ~ 1830968 (+)
G25030 NA non-coding upstream 201229 1788631 ~ 1789276 (+)
LOC122342875 NA non-coding downstream 35208 2028796 ~ 2033049 (+)
G25249 NA non-coding downstream 55636 2049224 ~ 2050952 (+)
G25288 NA non-coding downstream 113175 2106763 ~ 2107094 (+)
G25300 NA non-coding downstream 174145 2167733 ~ 2167997 (+)
G25309 NA non-coding downstream 289702 2283290 ~ 2283777 (+)
LOC122342451 NA other upstream 202409 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 317546 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 658662 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 699281 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 741336 1245578 ~ 1249169 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 652 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1106149 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1125927 3119515 ~ 3306758 (+)
G25514 NA other downstream 1488041 3481629 ~ 3502094 (+)
G25551 NA other downstream 1743914 3737502 ~ 3738594 (+)

Expression


Co-expression Network