golt1ba (golt1ba,golt1b,LOC107725527,LOC107591215,LOC107586262,LOC107659829,LOC108437943)


Basic Information

Item Value
gene id golt1ba
gene name golt1ba,golt1b,LOC107725527,LOC107591215,LOC107586262,LOC107659829,LOC108437943
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8483973 ~ 8487631 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238046.1
gcattcaaattaaatgttactatttttatgctaaaaaaaaaaaacttcgtGAAATTATCATTCATACATGAAAGTATACATCGGGAAAAAATGTCGTACAGACTCGTTAAAATGTTGAAACAATGTAGAAACTTCCACCTAATAGACCGGCGTGTGTGATGTTAAAAGAGCTCAGTTGTAAACACTGACCGGAAGATGGCGCGGTGGACACGGAAGTAAACAACTTTATCAGCGCTCCGAATATAACGTTAACGGTTGCGTCTATAATTATCACGTTCATTGTGATAAAAATGTTGCTTGTAAACTCctacatattaaaaacattttttactaaatatacaGTTCAATATTTACCTCTTTTATCACTTCATCAATAGGCACACAAACGCATTAAATATCTTAAACCTGCTTTAGATCccctttagatttttttttacatgctagCTCTTCAAAATAGCAATCCTTTAAAGAAGTAAATTACTGGGAGACGCGTTAGGTTCGTAAAGTTTTTCCGGAAGTTGAAAGTGAGTGTTTCCGGTACGCGTGGCCGCTCCTGTGACAGCTGCTGAGCGAGACGAGCCGAGATGATTTCCCTCACCGACTCCCAGAAAATTGGAATGGGGTTAACAGGATTTggtgtattttttctgttttttgggATGATCCTGTTTTTCGATAAAGCTCTCCTTGCCATAGGAAATATCCTTTTTGTAGTCGGCCTGGCGTTCGTGATCGGTCTGGAGAGGACGTTCAGGTTCTTCTTCCAGAAGCACAAAATGAAAGCCACCAGCTTCTTCCTAGGAGGCGTCTTCGTAGTGCTGATCGGATGGCCCATCGTCGGAGTCATTCTAGAGTTTTATGGCTTCTTTCTATTATTCAGGGGGTTCTTTCCAGTGGTCGTAGGCTTCATCAGGAGAATTCCTGTGCTAGGATACTTACTGAATCTTCCCTTTATCAGCGGGGCTGAGCGGACAGTCAGCCATCTTGGTCAGTCACTGCTAATTCTGTCTTGCATGCGAGCATGAATCATGCTGTCCCCGTGTGCAGTGTTTTAAGCGATCTGTTACATCCGTAAGTAATATGAATAGTGTCCTAATCCTTCCGTACCTCCTCTTTTTGTTT
>XM_043238047.1
gcattcaaattaaatgttactatttttatgctaaaaaaaaaaaacttcgtGAAATTATCATTCATACATGAAAGTATACATCGGGAAAAAATGTCGTACAGACTCGTTAAAATGTTGAAACAATGTAGAAACTTCCACCTAATAGACCGGCGTGTGTGATGTTAAAAGAGCTCAGTTGTAAACACTGACCGGAAGATGGCGCGGTGGACACGGAAGTAAACAACTTTATCAGCGCTCCGAATATAACGTTAACGGTTGCGTCTATAATTATCACGTTCATTGTGATAAAAATGTTGCTTGTAAACTCctacatattaaaaacattttttactaaatatacaGTTCAATATTTACCTCTTTTATCACTTCATCAATAGGCACACAAACGCATTAAATATCTTAAACCTGCTTTAGATCccctttagatttttttttacatgctagCTCTTCAAAATAGCAATCCTTTAAAGAAGTAAATTACTGGGAGACGCGTTAGGTTCGTAAAGTTTTTCCGGAAGTTGAAAGTGAGTGTTTCCGGTACGCGTGGCCGCTCCTGTGACAGCTGCTGAGCGAGACGAGCCGAGATGATTTCCCTCACCGACTCCCAGAAAATTGGAATGGGGTTAACAGGATTTggtgtattttttctgttttttgggATGATCCTGTTTTTCGATAAAGCTCTCCTTGCCATAGGAAATATCCTTTTTGTAGTCGGCCTGGCGTTCGTGATCGGTCTGGAGAGGACGTTCAGGTTCTTCTTCCAGAAGCACAAAATGAAAGCCACCAGCTTCTTCCTAGGAGGCGTCTTCGTAGTGCTGATCGGATGGCCCATCGTCGGAGTCATTCTAGAGTTTTATGGCTTCTTTCTATTATTCAGGGGGTTCTTTCCAGTGGTCGTAGGCTTCATCAGGAGAATTCCTGTGCTAGGATACTTACTGAATCTTCCCTTTATCAGCGGGGCTGAGCGGACAGTCAGCCATCTTGTATGTGGACAAAATGAGTGAAAGCAACAACATGGTTTAAcagactctctttttttttttttttttttttttaccgcttATTTATGACGGATTTTCTAAAGCTTTACCCTAAAACAGCCACGAGGAGTGTAGAAGTCGTATTACCGAAGCTTTATGTTCAGGCGCGTTTCCACTGATCTTTACGTCGGTGAGAAGCAGACCGTGCGCGTGGAAAACAAGCCACTCCTCCGTCGGCCGGCCAAAGCTAAACCCAGCATCGCTGCGTCCCTCGACAACTGTGCCCTACTTTAGAAACACACGACTGGAGGCTACACCCTGGGAGGAGCGTCTGTTTGAATGTGTACAAGCGACTTCTGGAAGTCTGTATTCTGTTACAATAATGGCCTTGTTAcaatgtaattgtattttgaaAAGGGAGGCGAGCTGGATGACTCTAATTTCTATTCCCCCCCTTCTATCACACCTGCTGAGACCGTGTggtatttacactttattttagaattaaacgGTTACTAATCAGACTGGcatattatgtttattgttagatgttattattattattgttgttatcgttattattattaactttgatttttttcctctgtcttCAAAAATGGTGGGATTTCAGAATGGGTCAGCTGCCACAAACTTTTGTAAATAGAAATTGAAAAACTGTA
>XM_043238048.1
gcattcaaattaaatgttactatttttatgctaaaaaaaaaaaacttcgtGAAATTATCATTCATACATGAAAGTATACATCGGGAAAAAATGTCGTACAGACTCGTTAAAATGTTGAAACAATGTAGAAACTTCCACCTAATAGACCGGCGTGTGTGATGTTAAAAGAGCTCAGTTGTAAACACTGACCGGAAGATGGCGCGGTGGACACGGAAGTAAACAACTTTATCAGCGCTCCGAATATAACGTTAACGGTTGCGTCTATAATTATCACGTTCATTGTGATAAAAATGTTGCTTGTAAACTCctacatattaaaaacattttttactaaatatacaGTTCAATATTTACCTCTTTTATCACTTCATCAATAGGCACACAAACGCATTAAATATCTTAAACCTGCTTTAGATCccctttagatttttttttacatgctagCTCTTCAAAATAGCAATCCTTTAAAGAAGTAAATTACTGGGAGACGCGTTAGGTTCGTAAAGTTTTTCCGGAAGTTGAAAGTGAGTGTTTCCGGTACGCGTGGCCGCTCCTGTGACAGCTGCTGAGCGAGACGAGCCGAGATGATTTCCCTCACCGACTCCCAGAAAATTGGAATGGGGTTAACAGGATTTggtgtattttttctgttttttgggATGATCCTGTTTTTCGATAAAGCTCTCCTTGCCATAGGAAATATCCTTTTTGTAGTCGGCCTGGCGTTCGTGATCGGTCTGGAGAGGACGTTCAGGTTCTTCTTCCAGAAGCACAAAATGAAAGCCACCAGCTTCTTCCTAGGAGGCGTCTTCGTAGTGCTGATCGGATGGCCCATCGTCGGAGTCATTCTAGAGTTTTATGGCTTCTTTCTATTATTCAGGGGGTTCTTTCCAGTGGTCGTAGGCTTCATCAGGAGAATTCCTGTGCTAGGATACTTACTGAATCTTCCCTTTATCAGCGGGTATGTGGACAAAATGAGTGAAAGCAACAACATGGTTTAAcagactctctttttttttttttttttttttttaccgcttATTTATGACGGATTTTCTAAAGCTTTACCCTAAAACAGCCACGAGGAGTGTAGAAGTCGTATTACCGAAGCTTTATGTTCAGGCGCGTTTCCACTGATCTTTACGTCGGTGAGAAGCAGACCGTGCGCGTGGAAAACAAGCCACTCCTCCGTCGGCCGGCCAAAGCTAAACCCAGCATCGCTGCGTCCCTCGACAACTGTGCCCTACTTTAGAAACACACGACTGGAGGCTACACCCTGGGAGGAGCGTCTGTTTGAATGTGTACAAGCGACTTCTGGAAGTCTGTATTCTGTTACAATAATGGCCTTGTTAcaatgtaattgtattttgaaAAGGGAGGCGAGCTGGATGACTCTAATTTCTATTCCCCCCCTTCTATCACACCTGCTGAGACCGTGTggtatttacactttattttagaattaaacgGTTACTAATCAGACTGGcatattatgtttattgttagatgttattattattattgttgttatcgttattattattaactttgatttttttcctctgtcttCAAAAATGGTGGGATTTCAGAATGGGTCAGCTGCCACAAACTTTTGTAAATAGAAATTGAAAAACTGTA

Function

symbol description
golt1ba Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1B (golgi transport 1B).
golt1b Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Located in endoplasmic reticulum. Part of protein-containing complex.

NR:

description
PREDICTED: vesicle transport protein GOT1B

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238046.1 False 1122 mRNA 0.41 5 8483973 8486949
XM_043238047.1 True 1663 mRNA 0.40 6 8483973 8487631
XM_043238048.1 False 1638 mRNA 0.40 5 8483973 8487631

Neighbor

gene id symbol gene type direction distance location
tcp11l2 tcp11l2,LOC107586172,LOC107589958,LOC107694691,LOC107659845,LOC107744901,LOC107725683 coding upstream 1320 8475706 ~ 8482653 (+)
pkp2 LOC107725677,LOC107659846,LOC107586091,LOC107694692,LOC107589947 coding upstream 9268 8460448 ~ 8474705 (+)
si:dkeyp-38g8.5 si:dkeyp-38g8.5,LOC107595941,LOC107659854,LOC107744947,LOC107690729,LOC107725679 coding upstream 229128 8252084 ~ 8254845 (+)
copg2 copg2,LOC107725548,LOC107676915,LOC107744880 coding upstream 371064 8103345 ~ 8112909 (+)
ucn3l ucn3l,LOC107725544,LOC107676913,LOC107595855,LOC107555541,LOC107744883,LOC107690866 coding upstream 381169 8101251 ~ 8102804 (+)
kiss2 NA coding downstream 15235 8502866 ~ 8504047 (+)
dnai7 casc1,LOC107725557,LOC107659833,LOC107744936 coding downstream 286657 8774288 ~ 8780078 (+)
bcat1 bcat1,LOC107590116,LOC107725514,LOC107664876,LOC107744911,LOC107587341 coding downstream 316561 8804192 ~ 8815015 (+)
igf1 igf1,LOC107659835,LOC107725558,LOC107664880 coding downstream 334099 8821730 ~ 8832632 (+)
pmch pmch,LOC107659836,LOC107591230 coding downstream 354113 8841744 ~ 8843250 (+)
LOC122343529 NA non-coding upstream 106664 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 152671 8278559 ~ 8331302 (+)
G27073 NA non-coding upstream 184974 8225458 ~ 8298999 (+)
G27066 NA non-coding upstream 308174 8175465 ~ 8175799 (+)
LOC122342736 NA non-coding upstream 351645 8129161 ~ 8132328 (+)
G27162 NA non-coding downstream 264807 8752438 ~ 8752849 (+)
G27301 NA non-coding downstream 465291 8952922 ~ 8953122 (+)
G27345 NA non-coding downstream 566390 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 570237 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 581300 9068931 ~ 9076136 (+)
stmp1 NA other upstream 142 8482890 ~ 8483831 (+)
G27079 NA other upstream 234750 8247912 ~ 8249223 (+)
G26993 NA other upstream 345534 8137738 ~ 8138439 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other upstream 383224 8041432 ~ 8100749 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other upstream 925484 7532912 ~ 7558489 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other downstream 280 8487911 ~ 8491938 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other downstream 46185 8533816 ~ 8548002 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other downstream 387086 8874717 ~ 8890176 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other downstream 528210 9015841 ~ 9018333 (+)
apaf1 apaf1,LOC107744928 other downstream 551007 9038638 ~ 9221046 (+)

Expression


Co-expression Network