flot1a (flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738)


Basic Information

Item Value
gene id flot1a
gene name flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27409088 ~ 27415650 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238050.1
GGAAGAAGTGCTCCCGTGTAAACCGGGCGGGGCGCCATCACCGTCAGACCCCGCTACTGGTCGCAGCCTGCCGAGCCTTTATCTCGCACCGACTGGAAAAGAAGCCAGACACCACTATCGAGTCGATACATATCTTCCCTCCGCTCGCATAAAACGtgtgaaaatgttttacactTGCGGTCCAAATGAAGCAATGGTGGTGTCGGGTTTCTGCCGCTCACCGCCAGTCATGATCTCCGGTGGGAGAGTGTTTGTTTTCCCCTGCGTCCAGCAGATACAAAGGATCTCTTTGAACACACTGACGCTGAACGTGAAGAGCGATAAAGTCTACACACGTCACGGGGTGCCCATCTCTGTCACCGGGATTGCGCAGATGAAGATTCAAGGGCAAAATAAGCAGATGTTGGCTGCGGCGTGTCAGATGTTTCTGGGAAAGTCAGAGGGTGAGATCGCCCACATTGCCTTGGAAACGCTGGAGGGTCACCAGAGAGCCATCATTGCTCACCTGACTGTGGAGGAGATctacaaagacagaaagaagttTTCCGAGCAGGTGTTTAAGGTGGCTTCGTCCGACCTTGTCAACATGGGCATCAGCGTGGTCAGCTACACGCTCAAAGACGTCCACGATGACCAGGATTACCTGCACTCTTTGGGGAAGGCCCGTACGGCACAAGTGCAGAAGGATGCTCGAATTGGGGAAGCCATGAACAAAAGAGACGCGGTGATCAGGGAGGCCAATGCTATACAGGAGAAGGTATCTGCTCAGTACATGAATGAGATCGAGATGGCTAAGGCTCAGAGGGACTACGAGCTGAAGAAGGCCGTTCACGACATTGAGGTCTTCACCAAAAAAGCAGAGTCTGAAATGGCCTATCAGCTGCAGGTGGCGAAAACAAAGCAGCGGATCGAGGAGGAGAAGATGCAGGTGTTGGTGGTGGAGCGCTCGCAGCAAATCACGCTTCAAGAACAGGAGATCTCTCGCAAGGAGAAGGAGCTGGAGGCCAAAGTCAAGAAACCAGCCGAGGCCGAGCGATACCGGCTGGAGAAACTGGCAGAAGCAGAACGTCTTCAGCTGATCATGGAGGCAGAAGCTGAGGCCGAATCTATCAAAATGAGAGGAGAGGCCGAAGCATTCGCCGTGGAGGCTAAAGGTCGCGCCGAGGCTGAGCAGATGGCTAAGAAGGCCGAGGCTTTCCAGCACTACAAGGAAGGAGCTATGGTGGACATGTTGCTGGAGAAACTGCCACTGATGGCAGAGGAGATAAGTAAGCCCCTTTCAGCTGCCAATAAGGTCACCATGGTTTCCAGTGGAGGTTCAGAGGTTGGAGCAGCCAAGCTGACCGGAGAAGTGCTCGACATCATGACCAGACTGCCTGAAACCATCGAGAAACTGACTGGAGTCAACATTTCCCAGgTGGCCCAGACTGGTTGAAGAAATCATCTATCGTTTCTGTATGCATGCATCATTCATCTAGTTTTCTCGTactctcacttttttttatcaggTTCTTTATCATTTAAACGACCCTCTTCTCTATCTTTGACGATTTATTTCTTCTCCTTTTATCTTTCTTGTCTTCCACCCTGCATCTCTTTGGTTTCCCCTTTCCCATGTTTCTCTCTCGAACTTACACTTCCTGTCCGTCTTGCCATGCTGCCAAAACCCAAAGtgcattttaatctaaaactccAGGGAAGAATGctgttctttatatttttaatgcaatcatAAGAAGACAGTGAAGTCCAAGGATCTGTTGAATGCCATCAGACACTACAACTtctgacattttgaaatgttacttttactttttcttatAGACCACTTTTCAATGCTGGTAGTGCACTAAGAgcattttgttatgtttgaGCTTTCCATGAGGTAAGCTTTTGGAAGCCAAAGTAGCGTGAAGGGAAAAATTTGTAAAGaactattgcttttttttaaatttatttgtgtgGGTTGAATAGGATATATTTTCACTTTACCTCAGCAGTACATTATAGCTATATTAGTTGGACATAATTGTGTAGGAGTTCAAAAGGTACTATGTTCTGTAGATCATTTCAAATATGATCCTCGTATGTGCGTTTAAGTGTGTATTCAAATGAACAATCAAGATGTTTTCACGTGTTATGCAGAAGTCTGCAATTATTTAAActtctgttttgttctgttccTGAAATAAGGCATGTTAAGATTTCTGAATTgtgcttaatttaaaaaaaaaaaggattttaggGAGTTCTCATATAAGTTTTGTTCATAATCATCAGTATTTACTACTGGTTACActacatttttctttgattacacaataattataatgaatgttctttttttcaaatgtgtttaattgtcAGCATTAGATATATAAGCATGTATTCATAAGCGCCAATGacataatttaaattgaattgttATTAACATGATGTATAAACACTGTTATGGTACTTCATAGATATTGTGTGTAATGCAAACTGAACTAACCACACATTTGTcacttttgtatttgtttttacgATCTTCATGTTTAATGGTTTGATGAATGattactaaaacttttaaaatgggATGCATCCCTTTGAGGATAAATAGAAAGGCCTGTTCACTTCTTATTGGTGGGCAGGTATTAGTTAGACCTAAAGAGTGATGTTTGGATAGATTTAGTATGTCAGGTCAGTAGGTAGCCCTGCTGTTACGCTGTGTAGGCTATGGCTGCTATGTTATTTGTCAGATGCTTTTTCTACTCTATACAAAGTATCTATACTAATACAGTAAACAAATCACctattttaactgtttaaacaATTTAATCTTTTTCAGCATGCATGCAAAGACTAACAAACCAAACCACTGTATTGTCTACTTGTGCTTATGATGCCTTAAAGCAACCTCCCCTACTAAAATAAACGTTTAACTAAA

Function

symbol description
flot1a Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human FLOT1 (flotillin 1).

NR:

description
PREDICTED: flotillin-1

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0005901 caveola cellular_component

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238050.1 True 2929 mRNA 0.43 13 27409088 27415650

Neighbor

gene id symbol gene type direction distance location
LOC122342367 NA coding downstream 539940 26865773 ~ 26869148 (-)
trnas-uga_106 NA coding downstream 681694 26727313 ~ 26727394 (-)
trnak-uuu_100 NA coding downstream 683191 26725825 ~ 26725897 (-)
trnak-uuu_99 NA coding downstream 685242 26723774 ~ 26723846 (-)
trnas-aga_108 NA coding downstream 686045 26722965 ~ 26723043 (-)
pdk2b pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345 coding upstream 531346 27946996 ~ 27951997 (-)
LOC122343310 LOC107752528,LOC107549854 coding upstream 550659 27966309 ~ 27969769 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding upstream 554260 27969910 ~ 27977175 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding upstream 565420 27981070 ~ 28037700 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 697852 28113502 ~ 28118332 (-)
G31462 NA non-coding downstream 3007 27360904 ~ 27406081 (-)
G31472 LOC107752514,LOC105892077,LOC107665159 non-coding downstream 8212 27398769 ~ 27400876 (-)
G31466 NA non-coding downstream 17088 27373269 ~ 27392000 (-)
trnak-cuu_3 NA non-coding downstream 411953 26997065 ~ 26997135 (-)
trnae-cuc_35 NA non-coding downstream 415277 26993740 ~ 26993811 (-)
G31481 NA non-coding upstream 13480 27429130 ~ 27438241 (-)
G31484 tcf19l,LOC107753767 non-coding upstream 25016 27440666 ~ 27442686 (-)
G31507 NA non-coding upstream 141955 27557605 ~ 27649545 (-)
G31496 NA non-coding upstream 179343 27594993 ~ 27599290 (-)
LOC122343301 NA non-coding upstream 196077 27611727 ~ 27615408 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 19690 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 26261 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 41439 27366412 ~ 27367649 (-)
G31400 LOC102197881 other downstream 1083852 26324479 ~ 26325236 (-)
G31394 NA other downstream 1233839 26173699 ~ 26175249 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other upstream 123705 27539355 ~ 27615941 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other upstream 227042 27642692 ~ 27644732 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other upstream 649647 28065297 ~ 28067762 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 704597 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 765916 28181566 ~ 28187257 (-)

Expression


Co-expression Network