LOC122342395


Basic Information

Item Value
gene id LOC122342395
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2686424 ~ 2719361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250552.1
TAGTGACCCTAGATGCCCAGGGAGATCCTgccgccacacacacacagtcacagcGGCTCTCGCCAGCGTGACTGAAGCGCCCTGCTGAGAGCTCAGATGTCAAGGCTGGGACCTCTGTAGCGGACCCCGCGGACGCACGTGACCTTCCCACGAAGTGCATTTGCCACCCGAGGAGAAGTCATGCCACGCGAGCGCCAGTTCGATTCTTGGAAAACACGCCTGAATGACGCACATCAAAATTCAATCACACACGAGCACCATCCAGGCACCCACCTCCACCCCCTTGTTGACTTGATTAAGCAGCCCAAGTTTGCATTGGTTTGCACCAAGTGCCTCAACCAAAGGTGGGGGCGGGACTATTTGTTTGTCCCGACAATGGAAACCGTAGAAATGTTGACCGAAACATTGAAGGAGGGACCCGTACTCAACTCTATGGTGTGATGTGGATTCAGTGCAGCGGTCTCCTGTTGTGTGTGAGGTGTGATAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGATTGAGTTCTGTTCTGCTGAACAGCTGTCATTCCCTGCTCACTGTCAAACAACATACAGGGATGCCTGGGGTTCTGACAGCTCTACCGCCATCCACAACGTTTATTTATCTGAGGAGGGAAAGAGAGGCTGGAGTGGATGATGGTTCTCACACCTCCGGCTCAGCGTTGATATCTGTTCAGAGAGCGGCAGAGGGAATGAAAGAATGGAAGGAGGAGGTgcaaagaagaggaggagGTGCGCGGGCACGCTCATTAAGACGGAGGGCAGACTGGCACTGCCTCAACAAACGGGAAAACAAGTGCCGCCAGTCCAGCTCTGCGGAACCACGTCCCCACCGACGGGAACCTCTCCACGGGCCTCTCCGCTAGCCCGGGACACTCA
>XR_006250553.1
TAGTGACCCTAGATGCCCAGGGAGATCCTgccgccacacacacacagtcacagcGGCTCTCGCCAGCGTGACTGAAGCGCCCTGCTGAGAGCTCAGATGTCAAGGCTGGGACCTCTGTAGCGGACCCCGCGGACGCACGTGACCTTCCCACGAAGTGCATTTGCCACCCGAGGAGAAGTCATGCCACGCGAGCGCCAGTTCGATTCTTGGAAAACACGCCTGAATGACGCACATCAAAATTCAATCACACACGAGCACCATCCAGGCACCCACCTCCACCCCCTTGTTGACTTGATTAAGCCCAAGTTTGCATTGGTTTGCACCAAGTGCCTCAACCAAAGGTGGGGGCGGGACTATTTGTTTGTCCCGACAATGGAAACCGTAGAAATGTTGACCGAAACATTGAAGGAGGGACCCGTACTCAACTCTATGGTGTGATGTGGATTCAGTGCAGCGGTCTCCTGTTGTGTGTGAGGTGTGATAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGATTGAGTTCTGTTCTGCTGAACAGCTGTCATTCCCTGCTCACTGTCAAACAACATACAGGGATGCCTGGGGTTCTGACAGCTCTACCGCCATCCACAACGTTTATTTATCTGAGGAGGGAAAGAGAGGCTGGAGTGGATGATGGTTCTCACACCTCCGGCTCAGCGTTGATATCTGTTCAGAGAGCGGCAGAGGGAATGAAAGAATGGAAGGAGGAGGTgcaaagaagaggaggagGTGCGCGGGCACGCTCATTAAGACGGAGGGCAGACTGGCACTGCCTCAACAAACGGGAAAACAAGTGCCGCCAGTCCAGCTCTGCGGAACCACGTCCCCACCGACGGGAACCTCTCCACGGGCCTCTCCGCTAGCCCGGGACACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250552.1 True 902 lncRNA 0.55 6 2686424 2719361
XR_006250553.1 False 899 lncRNA 0.55 6 2686424 2719361

Neighbor

gene id symbol gene type direction distance location
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding upstream 44587 2622539 ~ 2641837 (+)
foxp2 foxp2 coding upstream 83923 2505946 ~ 2602501 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding upstream 291983 2388979 ~ 2394441 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 496676 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 664114 2001089 ~ 2022310 (+)
elk3 elk3,LOC107743764 coding downstream 127913 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 188098 2907459 ~ 2908695 (+)
LOC122342536 NA coding downstream 192817 2912178 ~ 2913479 (+)
phyh phyh,LOC107743808 coding downstream 196800 2916161 ~ 2920243 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding downstream 203860 2923221 ~ 2927098 (+)
LOC122342427 NA non-coding upstream 6681 2666342 ~ 2679743 (+)
LOC122342588 NA non-coding upstream 23379 2662114 ~ 2663045 (+)
G25346 gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006 non-coding upstream 170033 2439459 ~ 2516391 (+)
LOC122343307 NA non-coding upstream 232135 2439495 ~ 2454289 (+)
G25334 NA non-coding upstream 273840 2412063 ~ 2412584 (+)
LOC122343412 NA non-coding downstream 7441 2726802 ~ 2787657 (+)
LOC122343411 NA non-coding downstream 70717 2790078 ~ 2825789 (+)
G25453 NA non-coding downstream 211747 2931108 ~ 2931859 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding downstream 215801 2935162 ~ 3030892 (+)
G25456 NA non-coding downstream 298206 3017567 ~ 3024764 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 690888 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 898328 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1013465 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1354581 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1395200 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 380376 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 400154 3119515 ~ 3306758 (+)
G25514 NA other downstream 762268 3481629 ~ 3502094 (+)
G25551 NA other downstream 1018141 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1510268 4229629 ~ 4231092 (+)

Expression


Co-expression Network