LOC122342426


Basic Information

Item Value
gene id LOC122342426
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17667150 ~ 17669761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250563.1
CATGCTGCTCCAGAGGGAACCTGCGAGTGCTTATCATATCAGTGTGGATGTTTGCTCAGTTAAGTAGCCTAACATAGGGTTTTTAAACCCagtttatatttgaaattattgaaAATAGTTGAGGATGATCAAAAACTGACGTtatctgtttgtgtttcatgATAAAAGCGTATCCTTCGTAGCTGCAGGAACTCTCATTTCCTTTGGAATGGGGGAAATGTCCTGCAACGATCTGCAATGCCAGGAAATATCTTTAAACGCTGGCACACTGGCACACATGGgtctgtgtttgtatattaaCCAGCATGCACTTGGAGCAACAAATCAGTGCATCCGAGTTCTGAAAAAGGAGGAAAGCGAAAAGATCTGCCGCCACCTAGTGGTGAATTTGccTTATCAACTTTTCATCAACAATGTCTTCTTTCTCGGAAATTGTGTTTTGTCCATATTTTTCTCCACACAAAGTTTTGCTCTGGAACAATGCAGATATGACCGTATAAATCCCCTTTTCCCCTAAATGGTTCAGATGTGTTAGATGATGCCGGTAATATTTTAACTTATGGGCATTTCTTGATCATCACGGCTTTCCTGCTCcgctaaaagaaaacaatacattaataaaagctATACCAGCAGGTTTATACCAATTAGTTAGAAGTCAGGTAATGTTGAGTGAAGGTAATGCGGCGTCTCCTGTTTTGTTTGGGGGTGGTAGTAACTTTTTAGACAAGAAGTGTAACAACAAACATATTCACAGGCTtcttcaagttaaaaaaaaagattactccaagtctttatatttttagcacTTTAAATAAGGTGTACAATTTTGCcctcaaaaaatattatttgttattatgaaacaccaaaacatttttcctttgaatatattgttaattttttttatgttgtatttaaaactatttccaTAAGCAAAAATGGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250563.1 True 945 lncRNA 0.37 3 17667150 17669761

Neighbor

gene id symbol gene type direction distance location
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding upstream 1253 17644435 ~ 17665897 (+)
clocka clock,clocka,LOC107701480 coding upstream 36328 17582070 ~ 17630822 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding upstream 88346 17565453 ~ 17578804 (+)
LOC122342653 l3hypdh,LOC107684001 coding upstream 176855 17483433 ~ 17490295 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding upstream 256298 17397135 ~ 17410852 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding downstream 136079 17805840 ~ 17811463 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding downstream 231680 17901441 ~ 17902917 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding downstream 242678 17912439 ~ 17915594 (+)
exosc2 exosc2,exos2 coding downstream 263544 17933305 ~ 17937916 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 269923 17939684 ~ 17963519 (+)
G29272 NA non-coding upstream 112960 17553833 ~ 17554190 (+)
G29200 NA non-coding upstream 281470 17385289 ~ 17385680 (+)
G29192 NA non-coding upstream 372510 17294375 ~ 17294640 (+)
G29181 NA non-coding upstream 446534 17220257 ~ 17220616 (+)
G29178 NA non-coding upstream 447636 17219142 ~ 17219514 (+)
LOC122343158 NA non-coding downstream 40294 17710055 ~ 17711711 (+)
G29305 NA non-coding downstream 68306 17738067 ~ 17739667 (+)
G29306 NA non-coding downstream 75767 17745528 ~ 17746317 (+)
G29317 NA non-coding downstream 147785 17817546 ~ 17817933 (+)
G29331 NA non-coding downstream 148385 17818146 ~ 17818416 (+)
atp5mj NA other upstream 626320 17038419 ~ 17040830 (+)
G28982 NA other upstream 1192769 16473898 ~ 16474381 (+)
G28899 NA other upstream 1681424 15985219 ~ 15985726 (+)
G28891 NA other upstream 1825295 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2011872 15565499 ~ 15655278 (+)
G29526 NA other downstream 630654 18300415 ~ 18301189 (+)
G29545 NA other downstream 766699 18436460 ~ 18461317 (+)
G29642 NA other downstream 1213418 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1620459 19290220 ~ 19342911 (+)
G29835 NA other downstream 2061501 19731262 ~ 19786128 (+)

Expression


Co-expression Network