LOC122342459


Basic Information

Item Value
gene id LOC122342459
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3116404 ~ 3117297 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250573.1
CTTTCAGCTGAGAGGCGTTCGCCATCAGCAGCGCCACGTCCAGCATGCTCTCCGCCACGCTCTTCTTAGTGGCGTAATGATTCATGTTGAGAGGCTCTGCGGGCTGAAAGAGACAAAGCATTTCAAATGAAatTCATGCATGCTTATTCCACCGACGGTGTGCTATCTTCAGTGGAGGAAAACAAGAGGCCATCTGCTCTCGTTTTTTAGAAGCAATATCAGCGGTTTCCAGCAACATCTGTACTCTGTGAGATAAGATCCTTCAAAACCAGAGAGAGGTTCTCGGTGCAAGTggaaaaaagctaaatgaaCCCGTTTGAATGTCAAAAGTACTGAatatattcatttctttataattaatacttctttttcttctgctcaGGACAAACACTCCAACCAAATacttcattaaaacacacacacacacacgtttgttttgaTATATATGTGAAGACTTTGATAggcttctattgtttttatactgacctaacaatatttttaatcgCCCTGCACCTTTTATGCATGCTTTAATAATTTTCAGTCACAAATGTCAGTGtttactatccttgtggggacatttggttgGACTAAGTTGTCCATATCTATCAATAGATGGCAGCATTTCACTATTCATTTTTTCAATCTGTAACTTACTTTTACAGTAACCATCTGGGGGCGCTAGATATCCTTTCATAATCATCTTTGTAatgatttatatacatatataatgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatactgtatataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250573.1 True 807 lncRNA 0.35 2 3116404 3117297

Neighbor

gene id symbol gene type direction distance location
wnk1b wnk1,LOC107725976,LOC107658853 coding downstream 21999 3027071 ~ 3094405 (-)
LOC122343240 NA coding downstream 91579 3024248 ~ 3024825 (-)
LOC122343283 NA coding downstream 98193 3017632 ~ 3018211 (-)
si:ch211-240l19.8 LOC107658767,LOC107725963 coding downstream 103045 3012766 ~ 3013359 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding downstream 178387 2935107 ~ 2938017 (-)
LOC122342759 fbxl14b,fbxl14,LOC107580311,LOC107656333,LOC108279751 coding upstream 237072 3354369 ~ 3356141 (-)
LOC122342755 LOC107676321,LOC107716109,LOC107709941,LOC107655767 coding upstream 283083 3400380 ~ 3402341 (-)
LOC122342398 LOC107584038,LOC107725905,LOC107658738 coding upstream 401392 3518689 ~ 3520928 (-)
LOC122342400 NA coding upstream 404397 3521694 ~ 3526313 (-)
LOC122342399 LOC107584032,LOC107579834,LOC107656234,LOC107711464,LOC107725908 coding upstream 410738 3528035 ~ 3531141 (-)
G25625 NA non-coding downstream 119946 2980159 ~ 2996458 (-)
LOC122343423 NA non-coding downstream 578398 2534205 ~ 2538006 (-)
LOC122343417 NA non-coding downstream 827285 2203585 ~ 2289119 (-)
G25362 NA non-coding downstream 832626 2283285 ~ 2283778 (-)
LOC122343454 NA non-coding downstream 933735 2167305 ~ 2182669 (-)
LOC122342458 NA non-coding upstream 182 3117479 ~ 3119550 (-)
G25673 wnt5b,LOC107656325,LOC103026771,LOC107580320,LOC107744029,LOC107726030 non-coding upstream 263361 3380658 ~ 3676399 (-)
LOC122342758 NA non-coding upstream 285527 3402824 ~ 3403502 (-)
LOC122342757 NA non-coding upstream 299290 3416587 ~ 3417917 (-)
LOC122342503 NA non-coding upstream 325125 3442422 ~ 3444891 (-)
LOC122342805 NA other downstream 94892 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 104190 2999882 ~ 3012214 (-)
LOC122342907 NA other downstream 643336 2472284 ~ 2473068 (-)
dock4b dock4b,LOC107656358,LOC108425388 other downstream 740688 2299635 ~ 2375716 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other downstream 1018603 2091351 ~ 2097801 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other upstream 417365 3534662 ~ 3577123 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other upstream 483703 3601000 ~ 3601991 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other upstream 485059 3602356 ~ 3618367 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 1016680 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 1147629 4264926 ~ 4267495 (-)

Expression


Co-expression Network