LOC122342545


Basic Information

Item Value
gene id LOC122342545
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4994949 ~ 4997226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250592.1
GCTGGTAGTAAAGTGAACTGCGTTTTTCATCCGCTCCACAAGGCGGCAGAAGCGCCTTTCAGAGACTTCGAACCCCCGACTGATCAGAAGAAGTAGAAACCTGGGAAGAAAACACGACAGTTCGCGTCAATAGTAAGAGAGGTGTTGAACGGAAGCAGAGCTCTGGAGCGTGAGGACAGACAGTGGCTGTAATGATGGACGTGTGCTGAAGGACGGgactcattttcaatgatgccACCCTTCCTTTTTCGTGTTCAGACTGAAGTACGTTAAGgtggatctgttttgtcttttgcgaaAGGAAGAAGACGAGCATCAAGTGATTTCCAGTGGATGCCATGACCTCCTCCGggacagctgaaagcagcacatcatgCGCAAGCTGTGGAATCGTTTGAATCCTCTCTGTCGCGTCTTAAGCATCCAAgtgcaatgtttcaaataactgccctgctcaaagcacaaattaaatggaaaaagacatACAAACGCTGAA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250592.1 True 496 lncRNA 0.48 3 4994949 4997226

Neighbor

gene id symbol gene type direction distance location
dmtf1 dmtf1,LOC107658823,LOC107726036,LOC107743449,LOC107656295,LOC107580832 coding upstream 29752 4958676 ~ 4965197 (+)
LOC122343293 LOC107658814,LOC107726023,LOC107592209,LOC107656292 coding upstream 66247 4894882 ~ 4928702 (+)
LOC122343294 svopl,LOC107725968,LOC107658766,LOC107744112,LOC107656247 coding upstream 100214 4889423 ~ 4894735 (+)
si:dkeyp-27e10.3 si:dkeyp-27e10.3,LOC107726043,LOC107743425,LOC107656289,LOC107580867,LOC107592246 coding upstream 106336 4868022 ~ 4888613 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding upstream 127767 4861328 ~ 4867182 (+)
syt10 syt10,LOC107744086,LOC107658793,LOC107656242,LOC107745011,LOC107565666,LOC107592193 coding downstream 56564 5053790 ~ 5068865 (+)
ccdc59 LOC107548114,LOC107739147,LOC107656276,LOC107745010 coding downstream 173524 5170750 ~ 5172410 (+)
cracr2ab cracr2ab,LOC107690648,LOC107742178,LOC107560738 coding downstream 219233 5216459 ~ 5224944 (+)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254 coding downstream 242177 5239403 ~ 5254016 (+)
sema3aa sema3aa,LOC107562295,LOC107694310,LOC107757236,LOC107655621,LOC107560735 coding downstream 259178 5256404 ~ 5344872 (+)
G26043 NA non-coding upstream 689 4981209 ~ 4994260 (+)
LOC122343284 NA non-coding upstream 695 4992074 ~ 4994254 (+)
LOC122342534 NA non-coding upstream 3637 4989167 ~ 4991312 (+)
LOC122342533 NA non-coding upstream 6761 4986179 ~ 4988188 (+)
LOC122343429 NA non-coding upstream 9738 4983221 ~ 4985211 (+)
LOC122342552 NA non-coding downstream 3611 5000837 ~ 5003088 (+)
LOC122343281 NA non-coding downstream 6627 5003853 ~ 5006063 (+)
LOC122343282 NA non-coding downstream 9572 5006798 ~ 5008999 (+)
G26133 NA non-coding downstream 84831 5082057 ~ 5082286 (+)
G26145 LOC107690655,LOC107573509,LOC107758319,LOC107574392,LOC107589730,LOC107575819,LOC107658713 non-coding downstream 106805 5104031 ~ 5104341 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 50069 4929471 ~ 4944880 (+)
G25958 NA other upstream 366050 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 759705 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 763857 4229629 ~ 4231092 (+)
G25551 NA other upstream 1256355 3737502 ~ 3738594 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 357106 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 784718 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 865381 5862607 ~ 5898827 (+)
vhll NA other downstream 1391317 6388543 ~ 6390927 (+)
G26692 NA other downstream 2190714 7187940 ~ 7227437 (+)

Expression


Co-expression Network