LOC122342552


Basic Information

Item Value
gene id LOC122342552
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5000837 ~ 5003088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250595.1
GCTGGTAGTAAAGTGAACTGCGTTTTTCATCCGCTCCACAAGGCGGCAGAAGCGCCTTTCAGAGACTTCGAACCCCCGACTGATCAGAAGAAGTAGAAACCTGGGAAGAAAACACGACAGTTCGCGTCAATAGTAAGAGAGGTGTTGAACGGAAGCAGAGCTCTGGAGCGTGAGGACAGACAGTGGCTGTAATGATGGACGTGTGCTGAAGGACGGgactcattttcaatgatgccACCCTTCCTTTTTCGTGTTCAGACTGAAGTACGTTAAGgtggatctgttttgtcttttgcgaaAGGAAGAAGACGAGCATCAAGTGATTTCCAGTGGATGCCATGACCTCCTCCGggacagctgaaagcagcacatcatgCGCAAGCTGTGGAATCGTTTGAATCCTCTCTGTCGCGTCTTAAGCATCCAAgtgcaatgtttcaaataactgccctgctcaaagcacaaattaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250595.1 True 472 lncRNA 0.48 3 5000837 5003088

Neighbor

gene id symbol gene type direction distance location
dmtf1 dmtf1,LOC107658823,LOC107726036,LOC107743449,LOC107656295,LOC107580832 coding upstream 35640 4958676 ~ 4965197 (+)
LOC122343293 LOC107658814,LOC107726023,LOC107592209,LOC107656292 coding upstream 72135 4894882 ~ 4928702 (+)
LOC122343294 svopl,LOC107725968,LOC107658766,LOC107744112,LOC107656247 coding upstream 106102 4889423 ~ 4894735 (+)
si:dkeyp-27e10.3 si:dkeyp-27e10.3,LOC107726043,LOC107743425,LOC107656289,LOC107580867,LOC107592246 coding upstream 112224 4868022 ~ 4888613 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding upstream 133655 4861328 ~ 4867182 (+)
syt10 syt10,LOC107744086,LOC107658793,LOC107656242,LOC107745011,LOC107565666,LOC107592193 coding downstream 50702 5053790 ~ 5068865 (+)
ccdc59 LOC107548114,LOC107739147,LOC107656276,LOC107745010 coding downstream 167662 5170750 ~ 5172410 (+)
cracr2ab cracr2ab,LOC107690648,LOC107742178,LOC107560738 coding downstream 213371 5216459 ~ 5224944 (+)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254 coding downstream 236315 5239403 ~ 5254016 (+)
sema3aa sema3aa,LOC107562295,LOC107694310,LOC107757236,LOC107655621,LOC107560735 coding downstream 253316 5256404 ~ 5344872 (+)
LOC122342545 NA non-coding upstream 3611 4994949 ~ 4997226 (+)
G26043 NA non-coding upstream 6577 4981209 ~ 4994260 (+)
LOC122343284 NA non-coding upstream 6583 4992074 ~ 4994254 (+)
LOC122342534 NA non-coding upstream 9525 4989167 ~ 4991312 (+)
LOC122342533 NA non-coding upstream 12649 4986179 ~ 4988188 (+)
LOC122343281 NA non-coding downstream 765 5003853 ~ 5006063 (+)
LOC122343282 NA non-coding downstream 3710 5006798 ~ 5008999 (+)
G26133 NA non-coding downstream 78969 5082057 ~ 5082286 (+)
G26145 LOC107690655,LOC107573509,LOC107758319,LOC107574392,LOC107589730,LOC107575819,LOC107658713 non-coding downstream 100943 5104031 ~ 5104341 (+)
G26148 NA non-coding downstream 108276 5111364 ~ 5111629 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 55957 4929471 ~ 4944880 (+)
G25958 NA other upstream 371938 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 765593 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 769745 4229629 ~ 4231092 (+)
G25551 NA other upstream 1262243 3737502 ~ 3738594 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 351244 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 778856 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 859519 5862607 ~ 5898827 (+)
vhll NA other downstream 1385455 6388543 ~ 6390927 (+)
G26692 NA other downstream 2184852 7187940 ~ 7227437 (+)

Expression


Co-expression Network