LOC122342564


Basic Information

Item Value
gene id LOC122342564
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13343726 ~ 13344257 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250599.1
TGAGCTCCTGCAGAACGTCTCTGGCCTTGTCCTCCAGTCCATCCAGATCCTGAGCTTTCTCCGCCAGAATGTTCTGATTTTCCACGAACGATCGCTCCAGCTCTGGGAGAGTTAAAGGGGAAGAAAAGTGAGGAATCGCAGCTGCTCGGCCTTCTGACGCGCATCAACTACACCTGCTGCCTTCTGATCTATCAGACCACTGGCCAGTTGGTACTTCGGCTGCACAAGTGAGTCAAACTCCTAAaatacgcacacacaaaaaatccACCTGTGAGGCTCGAAAGCGTGCAAGAGAGTATAATATGTATTCAAGAACATCATGTATTTAATGCCTGtgtcatttctcatttttcaacattttcctAACACTTTATGTTCCCCAAAACAATGTTTTCCAATACCTAAATTAAAACCATGTTCAGCATAGCA

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250599.1 True 429 lncRNA 0.45 2 13343726 13344257

Neighbor

gene id symbol gene type direction distance location
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding downstream 42397 13281183 ~ 13301329 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding downstream 68252 13268075 ~ 13275474 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding downstream 179603 13152421 ~ 13164123 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding downstream 193020 13146654 ~ 13150706 (-)
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding downstream 198818 13102315 ~ 13144908 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 29374 13373631 ~ 13375343 (-)
nr2c1 nr2c1,LOC107689225,LOC107755159 coding upstream 31917 13376174 ~ 13384446 (-)
fgd6 fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032 coding upstream 40331 13384588 ~ 13403216 (-)
usp44 usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228 coding upstream 89052 13433309 ~ 13440103 (-)
si:ch211-244b2.3 NA coding upstream 116786 13461043 ~ 13465673 (-)
G28377 NA non-coding downstream 23978 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 91692 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 98338 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 114407 13229094 ~ 13229319 (-)
G28349 NA non-coding downstream 115779 13227700 ~ 13227947 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 265959 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 476439 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 522520 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 525165 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 535774 13880031 ~ 13880847 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 156836 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 854545 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1327959 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1347087 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 1659864 11653470 ~ 11683862 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 67367 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 348214 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 471317 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 631100 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 811235 14155492 ~ 14176742 (-)

Expression


Co-expression Network